Definition Flavobacterium johnsoniae UW101 chromosome, complete genome.
Accession NC_009441
Length 6,096,872

Click here to switch to the map view.

The map label for this gene is 146302068

Identifier: 146302068

GI number: 146302068

Start: 5235436

End: 5237034

Strand: Direct

Name: 146302068

Synonym: Fjoh_4332

Alternate gene names: NA

Gene position: 5235436-5237034 (Clockwise)

Preceding gene: 146302061

Following gene: 146302077

Centisome position: 85.87

GC content: 31.58

Gene sequence:

>1599_bases
ATGCAAAAAATATTCATTTTATATTTTTTCATAATGGGTTTTTCTCTAACTGCGAAAGAGACAAATCCAATTCTTGAAGA
ATTAGATAAAGTGCTTCTTAAAAAAGAAGTTTACCTGAAACAGAAATACCGCAAAATAGAAACTTTAAAAAAGAATGTAT
CAAAGTATACCGTAAGCCAGAACAACGAAGAGCTTTACAATACTTATATGTCATTGTTTGATGAATACAAATCATTCAAA
TACGATTCGGCATATTATTATTTAGAACAGTCAAAAATCAAGGCCAAAATCTTAAAAGATCCGAAGTATTTGGCTAAAAG
CCGAATCAAAGAAGGTTTTGTACTTCTTTCCTCTGGATTATTTAAAGAAGCAATCGATACGCTGAATGTTATTGATGACA
AAAAACTGGATCAAAAAAATAAATTTGAATATTATAACATTAAAGCCCGCGCATATTATGATTTAGCCGATTATAACCGT
GATCAGCGTTTTAATATTCATTATGTACAGCAGGGAAATCATTTCCTTAAAAAAGCCTTAGAATTAATTGGAACCAATAC
AAATGAATATTGGGCTGCCGAGAGTTTAAAACGCCTAAAACAACAGGACTGGCGCGGTGCAGAATTTGCTTTCAGCTACT
GGATTAATAACTATCATCTTCCGCCTGATTATTACGGAATTGCGACTTCTAGTCTTGGTTATATTTATTCTGAAAGAGGT
TATACAAAAAAAGCCATTCATTACTTAGCACTTGCTGCTATTGCCGATGTTAAAAATGCAACCAAAGAAACCGTTGCACT
TAGAAACCTCGCAAACGAGCTGTTTAAAATGGGATATTTAGACAAAGCAAACGAATATATCAATATTGCAATGGATGATG
CTACTTTTTACAATGCCAGACATCGCAAAATTGAAATTTCATCAATACTGCCTATTATCGAAAAGGCACAGCTGAATAAT
GTAAAAGACAAAAATGATAAACTGGAGAAGATTATCATATTATTGACAATCCTTACGCTGATAATCATTTTGTTCTCTAT
TATTATTTTCAAACAATTAAAAGAGAAAAATAAAGCCCGAAAAATAATGGCTTCGTCGTATGCACAATTACAGGAAATGA
ATGTAAGTTTAAGTGAAGCAAACGCAATTAAAGAAGAATATATTACGTATTTCATTAAGGCAACATCGGCGTTTATTAAT
AAGATAGATCATATTCAAAAAAGCACGCTTCATAAAATCATTACAAAGAAAACAGATGAAGTTATTGCGAGTTTAAAGCG
TTATAATGTAAAGGAAGAAAGAGAAAATCTATTCCATCAGTTTGATGAAATTTTCTTGAAACTGTTCCCAACTTTTGTAA
CCGATTTTAATAATTTGTTTCCAAACGATCATAAATGCATTGTAAAAAAAGGCGAACTTTTAAATACTGAACTCCGCATT
TTTGCTCTGTACCGATTAGGTATTCAGGACAGCAGTCAAATGGCAGAATTTCTGGAACTTTCTGTGGCTACAATCTATAC
GTACAAAACCAGAATTAAAAGCAAATCTGATTTTAAAGATACTTTTGAGGAGAAAATTATGGCGATTAAGACTATTTAA

Upstream 100 bases:

>100_bases
TGACTCTAAAAACTGAAAATCATCAGTTTTAATTAATTTTGTATTTAAAACGAATTAACTCAACCTATAATTTATCTTAC
CCTAAAACCACAACCAAACC

Downstream 100 bases:

>100_bases
GGGGCTAAGGTTCGAGATGCTAAGGTTCTAAGTTTTTTTCTCATTAAAAGCTTCGGAGAAGCGATATATCTATAGAAAAA
CATTCATCTCATAAAAAGAA

Product: hypothetical protein

Products: NA

Alternate protein names: Transcriptional Regulator; Regulatory Protein

Number of amino acids: Translated: 532; Mature: 532

Protein sequence:

>532_residues
MQKIFILYFFIMGFSLTAKETNPILEELDKVLLKKEVYLKQKYRKIETLKKNVSKYTVSQNNEELYNTYMSLFDEYKSFK
YDSAYYYLEQSKIKAKILKDPKYLAKSRIKEGFVLLSSGLFKEAIDTLNVIDDKKLDQKNKFEYYNIKARAYYDLADYNR
DQRFNIHYVQQGNHFLKKALELIGTNTNEYWAAESLKRLKQQDWRGAEFAFSYWINNYHLPPDYYGIATSSLGYIYSERG
YTKKAIHYLALAAIADVKNATKETVALRNLANELFKMGYLDKANEYINIAMDDATFYNARHRKIEISSILPIIEKAQLNN
VKDKNDKLEKIIILLTILTLIIILFSIIIFKQLKEKNKARKIMASSYAQLQEMNVSLSEANAIKEEYITYFIKATSAFIN
KIDHIQKSTLHKIITKKTDEVIASLKRYNVKEERENLFHQFDEIFLKLFPTFVTDFNNLFPNDHKCIVKKGELLNTELRI
FALYRLGIQDSSQMAEFLELSVATIYTYKTRIKSKSDFKDTFEEKIMAIKTI

Sequences:

>Translated_532_residues
MQKIFILYFFIMGFSLTAKETNPILEELDKVLLKKEVYLKQKYRKIETLKKNVSKYTVSQNNEELYNTYMSLFDEYKSFK
YDSAYYYLEQSKIKAKILKDPKYLAKSRIKEGFVLLSSGLFKEAIDTLNVIDDKKLDQKNKFEYYNIKARAYYDLADYNR
DQRFNIHYVQQGNHFLKKALELIGTNTNEYWAAESLKRLKQQDWRGAEFAFSYWINNYHLPPDYYGIATSSLGYIYSERG
YTKKAIHYLALAAIADVKNATKETVALRNLANELFKMGYLDKANEYINIAMDDATFYNARHRKIEISSILPIIEKAQLNN
VKDKNDKLEKIIILLTILTLIIILFSIIIFKQLKEKNKARKIMASSYAQLQEMNVSLSEANAIKEEYITYFIKATSAFIN
KIDHIQKSTLHKIITKKTDEVIASLKRYNVKEERENLFHQFDEIFLKLFPTFVTDFNNLFPNDHKCIVKKGELLNTELRI
FALYRLGIQDSSQMAEFLELSVATIYTYKTRIKSKSDFKDTFEEKIMAIKTI
>Mature_532_residues
MQKIFILYFFIMGFSLTAKETNPILEELDKVLLKKEVYLKQKYRKIETLKKNVSKYTVSQNNEELYNTYMSLFDEYKSFK
YDSAYYYLEQSKIKAKILKDPKYLAKSRIKEGFVLLSSGLFKEAIDTLNVIDDKKLDQKNKFEYYNIKARAYYDLADYNR
DQRFNIHYVQQGNHFLKKALELIGTNTNEYWAAESLKRLKQQDWRGAEFAFSYWINNYHLPPDYYGIATSSLGYIYSERG
YTKKAIHYLALAAIADVKNATKETVALRNLANELFKMGYLDKANEYINIAMDDATFYNARHRKIEISSILPIIEKAQLNN
VKDKNDKLEKIIILLTILTLIIILFSIIIFKQLKEKNKARKIMASSYAQLQEMNVSLSEANAIKEEYITYFIKATSAFIN
KIDHIQKSTLHKIITKKTDEVIASLKRYNVKEERENLFHQFDEIFLKLFPTFVTDFNNLFPNDHKCIVKKGELLNTELRI
FALYRLGIQDSSQMAEFLELSVATIYTYKTRIKSKSDFKDTFEEKIMAIKTI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 62605; Mature: 62605

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKIFILYFFIMGFSLTAKETNPILEELDKVLLKKEVYLKQKYRKIETLKKNVSKYTVSQ
CCHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NNEELYNTYMSLFDEYKSFKYDSAYYYLEQSKIKAKILKDPKYLAKSRIKEGFVLLSSGL
CCHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCHHHHHHHHHHCCHHHHHCCH
FKEAIDTLNVIDDKKLDQKNKFEYYNIKARAYYDLADYNRDQRFNIHYVQQGNHFLKKAL
HHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEEHHHCCCCCCEEEEEEECCCHHHHHHH
ELIGTNTNEYWAAESLKRLKQQDWRGAEFAFSYWINNYHLPPDYYGIATSSLGYIYSERG
HHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHEEHHCCCCCCCCCCCCHHHCCHHHCCCCC
YTKKAIHYLALAAIADVKNATKETVALRNLANELFKMGYLDKANEYINIAMDDATFYNAR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHCCCC
HRKIEISSILPIIEKAQLNNVKDKNDKLEKIIILLTILTLIIILFSIIIFKQLKEKNKAR
CCEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KIMASSYAQLQEMNVSLSEANAIKEEYITYFIKATSAFINKIDHIQKSTLHKIITKKTDE
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
VIASLKRYNVKEERENLFHQFDEIFLKLFPTFVTDFNNLFPNDHKCIVKKGELLNTELRI
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH
FALYRLGIQDSSQMAEFLELSVATIYTYKTRIKSKSDFKDTFEEKIMAIKTI
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQKIFILYFFIMGFSLTAKETNPILEELDKVLLKKEVYLKQKYRKIETLKKNVSKYTVSQ
CCHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NNEELYNTYMSLFDEYKSFKYDSAYYYLEQSKIKAKILKDPKYLAKSRIKEGFVLLSSGL
CCHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCHHHHHHHHHHCCHHHHHCCH
FKEAIDTLNVIDDKKLDQKNKFEYYNIKARAYYDLADYNRDQRFNIHYVQQGNHFLKKAL
HHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEEHHHCCCCCCEEEEEEECCCHHHHHHH
ELIGTNTNEYWAAESLKRLKQQDWRGAEFAFSYWINNYHLPPDYYGIATSSLGYIYSERG
HHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHEEHHCCCCCCCCCCCCHHHCCHHHCCCCC
YTKKAIHYLALAAIADVKNATKETVALRNLANELFKMGYLDKANEYINIAMDDATFYNAR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHCCCC
HRKIEISSILPIIEKAQLNNVKDKNDKLEKIIILLTILTLIIILFSIIIFKQLKEKNKAR
CCEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KIMASSYAQLQEMNVSLSEANAIKEEYITYFIKATSAFINKIDHIQKSTLHKIITKKTDE
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
VIASLKRYNVKEERENLFHQFDEIFLKLFPTFVTDFNNLFPNDHKCIVKKGELLNTELRI
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH
FALYRLGIQDSSQMAEFLELSVATIYTYKTRIKSKSDFKDTFEEKIMAIKTI
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA