| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146302063
Identifier: 146302063
GI number: 146302063
Start: 5227300
End: 5228544
Strand: Reverse
Name: 146302063
Synonym: Fjoh_4327
Alternate gene names: NA
Gene position: 5228544-5227300 (Counterclockwise)
Preceding gene: 146302064
Following gene: 146302062
Centisome position: 85.76
GC content: 37.03
Gene sequence:
>1245_bases ATGAAAAGATATATCACATTATTGTTTTTCGGGATAATGAACATTTTAGTCGTTTCTGGCTGCAGCAGTGATGATAAAGG TTCAGATGAGCCTGTAAAACCTGAAACGCTTAAACCGGTTGCGATTGAAAAAACAAACAGCACCAAAATTTATGTTCATT ACATGCCATGGTTTGAAACCAATGAAAGCAGCGCCGATAAAAAATGGGGCTACCATTGGACAATGGCAAACAAAAACCCG AATACGGTAGGAGCAAATAACCGCAGAGAAATTGCGTCGTACTATTATCCTCTTATCGGACCGTATCATTCCGGCGATAA AAATGTGATTGAAAATCATTTATTATTGATGAAATATTCAGGAATCGATGGAATTTTAATCGATTGGTACGGAACTTACG ACGTAAACGATTACCGAATGGTAAAAGAAAACACAGAACAGCTTATTGCAGTTCTGGACAAAGTTGGTTTAGAATATGCC ATAGTTTATGAAGACAGAACTACAACAAATGTGGTAAATGCCGGAAAAGCAATTTCTGTGACCAGCGCTGCAAAAACAGA TTTGGCTTACATGGAAAAAAACTATTTTAATAATGCCAATTACATTAAAGTAGACGGAAAACCATTACTGCTTAATTTTG GACCAATTGTATTGCAGACACCTGCTGAATGGACGAATGTTTTTAATACATTAACTACAAAACCTACATTTTTAACCCTT TGGGATCAGTCTGTAGAAGCTGGTGCAAATGCAGCTGGAGAATATGCCTGGGTTTATAAAGACAATAGTTTCTTAACGAA TTATTACACCAACACAAAACCAAAACTTTCTGTTGCTATGGGAAGTGCTTATCCTGGTTTTAAAGATTTTTATGCCGAAG GCGGCGGCGGAGCAGCAATTGGATGGACAATTGAACACAACAATGGCGCAACGCTGGATGCAACACTCGAATTAGCTAAA AATGCCAATTTAAATTATCTGCAGCTGATTACATGGAATGACTTTGGAGAAGGAACAATGTTCGAACCTACAGTTGAATT TGGATACACGTATATCGAAAAAGTAAAGGCATTTGCCGGAGTTAAAAATACCGAATCTGTTTTTCCGGAAATAAGCAAAA TGTACAATCTGCGTGTAGAAAAGAAAGGGAATGCCGATGTTCAGAACAAGCTGGATCAGGCTTTTAATTATTTTGTTTCA ATGCAGCCTGCAAAAGCAAAACAGTTAATAAACGAAATAAAATAA
Upstream 100 bases:
>100_bases TCACTGATTAAAGAATTAAGTTTTTAATAAAAAATCCTTTTTAATTTTTTATCCCGATAACTATCGGGAGTGGCAAAAAA TAATAAAAACAAAAATCAAT
Downstream 100 bases:
>100_bases GAGCCGTAATTAATACCAATACATAATGAGAAACATAAGATATAGATACTGTATAATCGCCTTAGCTTCAATGCTTCTTT TTGCCTGCAGTACTAAAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 414; Mature: 414
Protein sequence:
>414_residues MKRYITLLFFGIMNILVVSGCSSDDKGSDEPVKPETLKPVAIEKTNSTKIYVHYMPWFETNESSADKKWGYHWTMANKNP NTVGANNRREIASYYYPLIGPYHSGDKNVIENHLLLMKYSGIDGILIDWYGTYDVNDYRMVKENTEQLIAVLDKVGLEYA IVYEDRTTTNVVNAGKAISVTSAAKTDLAYMEKNYFNNANYIKVDGKPLLLNFGPIVLQTPAEWTNVFNTLTTKPTFLTL WDQSVEAGANAAGEYAWVYKDNSFLTNYYTNTKPKLSVAMGSAYPGFKDFYAEGGGGAAIGWTIEHNNGATLDATLELAK NANLNYLQLITWNDFGEGTMFEPTVEFGYTYIEKVKAFAGVKNTESVFPEISKMYNLRVEKKGNADVQNKLDQAFNYFVS MQPAKAKQLINEIK
Sequences:
>Translated_414_residues MKRYITLLFFGIMNILVVSGCSSDDKGSDEPVKPETLKPVAIEKTNSTKIYVHYMPWFETNESSADKKWGYHWTMANKNP NTVGANNRREIASYYYPLIGPYHSGDKNVIENHLLLMKYSGIDGILIDWYGTYDVNDYRMVKENTEQLIAVLDKVGLEYA IVYEDRTTTNVVNAGKAISVTSAAKTDLAYMEKNYFNNANYIKVDGKPLLLNFGPIVLQTPAEWTNVFNTLTTKPTFLTL WDQSVEAGANAAGEYAWVYKDNSFLTNYYTNTKPKLSVAMGSAYPGFKDFYAEGGGGAAIGWTIEHNNGATLDATLELAK NANLNYLQLITWNDFGEGTMFEPTVEFGYTYIEKVKAFAGVKNTESVFPEISKMYNLRVEKKGNADVQNKLDQAFNYFVS MQPAKAKQLINEIK >Mature_414_residues MKRYITLLFFGIMNILVVSGCSSDDKGSDEPVKPETLKPVAIEKTNSTKIYVHYMPWFETNESSADKKWGYHWTMANKNP NTVGANNRREIASYYYPLIGPYHSGDKNVIENHLLLMKYSGIDGILIDWYGTYDVNDYRMVKENTEQLIAVLDKVGLEYA IVYEDRTTTNVVNAGKAISVTSAAKTDLAYMEKNYFNNANYIKVDGKPLLLNFGPIVLQTPAEWTNVFNTLTTKPTFLTL WDQSVEAGANAAGEYAWVYKDNSFLTNYYTNTKPKLSVAMGSAYPGFKDFYAEGGGGAAIGWTIEHNNGATLDATLELAK NANLNYLQLITWNDFGEGTMFEPTVEFGYTYIEKVKAFAGVKNTESVFPEISKMYNLRVEKKGNADVQNKLDQAFNYFVS MQPAKAKQLINEIK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46599; Mature: 46599
Theoretical pI: Translated: 5.51; Mature: 5.51
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRYITLLFFGIMNILVVSGCSSDDKGSDEPVKPETLKPVAIEKTNSTKIYVHYMPWFET CCHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCEEC NESSADKKWGYHWTMANKNPNTVGANNRREIASYYYPLIGPYHSGDKNVIENHLLLMKYS CCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHCEEEEEEEC GIDGILIDWYGTYDVNDYRMVKENTEQLIAVLDKVGLEYAIVYEDRTTTNVVNAGKAISV CCCEEEEEEEEEECCCCEEEEHHHHHHHHHHHHHCCCEEEEEECCCCCCHHCCCCCEEEE TSAAKTDLAYMEKNYFNNANYIKVDGKPLLLNFGPIVLQTPAEWTNVFNTLTTKPTFLTL ECHHHHHHHHHHHHHCCCCCEEEECCEEEEEECCCEEEECCHHHHHHHHHHCCCCEEEEE WDQSVEAGANAAGEYAWVYKDNSFLTNYYTNTKPKLSVAMGSAYPGFKDFYAEGGGGAAI ECCHHHCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCHHHHHCCCCCCEEE GWTIEHNNGATLDATLELAKNANLNYLQLITWNDFGEGTMFEPTVEFGYTYIEKVKAFAG EEEEECCCCCEEEEEEEECCCCCCCEEEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHC VKNTESVFPEISKMYNLRVEKKGNADVQNKLDQAFNYFVSMQPAKAKQLINEIK CCCCHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHEECCCHHHHHHHHHCC >Mature Secondary Structure MKRYITLLFFGIMNILVVSGCSSDDKGSDEPVKPETLKPVAIEKTNSTKIYVHYMPWFET CCHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCEEC NESSADKKWGYHWTMANKNPNTVGANNRREIASYYYPLIGPYHSGDKNVIENHLLLMKYS CCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHCEEEEEEEC GIDGILIDWYGTYDVNDYRMVKENTEQLIAVLDKVGLEYAIVYEDRTTTNVVNAGKAISV CCCEEEEEEEEEECCCCEEEEHHHHHHHHHHHHHCCCEEEEEECCCCCCHHCCCCCEEEE TSAAKTDLAYMEKNYFNNANYIKVDGKPLLLNFGPIVLQTPAEWTNVFNTLTTKPTFLTL ECHHHHHHHHHHHHHCCCCCEEEECCEEEEEECCCEEEECCHHHHHHHHHHCCCCEEEEE WDQSVEAGANAAGEYAWVYKDNSFLTNYYTNTKPKLSVAMGSAYPGFKDFYAEGGGGAAI ECCHHHCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCHHHHHCCCCCCEEE GWTIEHNNGATLDATLELAKNANLNYLQLITWNDFGEGTMFEPTVEFGYTYIEKVKAFAG EEEEECCCCCEEEEEEEECCCCCCCEEEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHC VKNTESVFPEISKMYNLRVEKKGNADVQNKLDQAFNYFVSMQPAKAKQLINEIK CCCCHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHEECCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA