| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146302053
Identifier: 146302053
GI number: 146302053
Start: 5214074
End: 5216893
Strand: Direct
Name: 146302053
Synonym: Fjoh_4317
Alternate gene names: NA
Gene position: 5214074-5216893 (Clockwise)
Preceding gene: 146302052
Following gene: 146302054
Centisome position: 85.52
GC content: 34.36
Gene sequence:
>2820_bases ATGAAAACTTCATATAAAAATATAAGCCTTAAAATACTCAAATGGACAGGAATAGTAATAGCGGGAATACTGCTGTTACT TTTTTTGATTCCGCTGTTATTTCCCGGAAAAGTAGCCTCAGAAGTTAAAAAAATTGCAAACGAACGTTTAGATACCAAAT TAGAATTTTCGAAGTCTAAACTTTCATTTTTTACCCATTTCCCTTCATTGACTGTCTCACTTGACGATATCTCTATGACG GGTTCAAAACCATTTGGAAATGATACTTTATTAAAAGCAGATCAGGTGGCTTTTGGAATAAACCTGAAAAGACTCATTTT TGACAGCGAAGTTAAAATCAATAAATTATACGTTTCAAACGCATTAATTAATGTAATGGTCAACGAAAAAGGACAAGCTA ATTATAATATTTATGTAGCACCCGAAGACCGAAAAAACGAAAAAGAAGATCCAAATGCTCCCGAAGAAGGAACAGCAATA AAATTAGAACGAATTGATTTAGAAAACTGCCATGTAAAATACAACGACCGATCTGCTAAAGTTTTAGTCGATGCCAAAGG TTTCAATTACATTGGAAAAGGAAACCTGAGCGATGATATTTTCGATTTAAATACCGATGCCAAAATCGATACGCTGGATT TCTACTATAACCGAACTGCATATCTAAGAAAAAAAGCCGTTCGTGCTGATTTAATTACCAGAATCAATACGCACGCACTT TCATTCATTCTTCAAAAAAATGAACTACAGATTAACAAACTGCCTTTAAAGTTTACCGGTCTATTTACCATTTTAAGAGA CGGGTATAAAATCAATATCAAAGCAGCATCAGAAAACACAACCGTAAAAGATTTACTTTCTGTTATGCCTCCGGAATATT TAACCTGGCTGGAAAAAACCGAAATTTCAGGAAAAAGTGATTTGGTGCTTTCTTTTAAAGGAGATTATAATGTTTCGAAA AAACAAAAACCCAATTTAGCTTTCAACCTAAAGATAAAAGACGGAGCCGTTAGTTATCAAAATGCGCCCGTTCCGCTTAC CGATTTCCAAATGGATTTAAATGCCATGCTGCCTTCTCTTGATACCGAACAATTATTGGTAAACCTTAGAACTTTACGAT TTAAAGTAGGCGAAAAAGATTATTTCAACGCTTATCTGCATAGTAAAGGTTTAAGCGAAATGAATGTAGATGCCAGTATA AAAGGTGCTTTGGATCTGGCTGTTGTAGACGCTGCAATTGGTTTGGAAAAAATTGATTTAAAAGGAATTTTAAAAACCAA TATTCAGGCAAAAGGGCTTTTCAGCACCTCAAAAAAACTTTTTCCTAAAACAATCGGCGGTATTTCGCTTCGAAACGGAT GGCTGAAAACAGACTACTACCCTAACCCAATTAAAGATATAACTTTTGTAGCCAACGTGCTTAATAAAGCCGGAACTTAT GAGGATCTAATTGTGGCTGTTTCTCCCGCTTCTTTTGTTTTTGAAGGAAATCCGATGTATGTAAATATGGCATTATCAGA TTTCAGCGATCTGGCTTATAATGCTAAAATTAAAGGAGAACTCAATGTGGGTAGAATATACCAGGTATTTTCACAAAAAG GTCTTGATGTAACCGGTTATGCAAAAGCCGATTTATCTCTTAAAGGAAAACAAAGCTACGCCACGACGGGACAATATAGC AAACTGGATAATCGAGGCACAATTCTGCTTAAAAATATCAAAGCTACTTCAGAATTATTCCCAAAAGCTTTTTTTATAAA ACAAGGAAACTTCCGTTTTCAGAACGAGAAAATGTGGTTTGAAAAATTCTATGCTTCTTACGGAAAATCTGATTTTGATA TTAACGGATATCTTTTAAATACTATAAATTATTTTCTGGAATCGCACGGAACTCTAAGCGGTGACTTTAATATGAAATCT AAACTCATCAATGTAGATGAATTTATGGCGCTTGAAAAAGGTGAAAATAAAGACCGAAAACTCGAAGTTGATTATGCCAA AGAAGACCATCCAAAAATGAGCGGTGTAGTAATGATTCCTAAAAACTTAAATGTTTCGCTTACTGCAAATGCCGATAAAG TAGAATATAACGGATTGAACCTAAACAAACTTTCAGGAAAAGTGGGCATTACAAAAGGTAGTTTCTATTTAGAAAATACT TCTTTAAATATTATTGACTGTATTCTTGGAGTTAATGCGGCATATAAAGACGAATCACCGACTTCTGCACATTTTGACGC ACATTTCACTGCAAAAGATTTCAGTGTTCAGCGTGCTTACAAAGAAATTCCGATGTTTCATGATATGGTAACTGTTGCCG AAAAAGCACAGGGAATTATTTCTGTTGATTACAAAATAAAAGGTGATTTAAACGGAAATATGGGGCCAATTTACGAATCG CTTGAAGGAGGCGGAACAATCAATCTTCGTGATGTAAAAATTAAAGGTTTAAAATTATTTGAAGGCGTGAGTTCGCAAAC CGGACAAAAAGGTTTGGATGATCCAAAAATGGAAGGAATCGAAATAAAATCGAATATTAATAATAATCTTATTTCTATAG AGCCTTTTACGTTTAGTGTAGCAAGTTTTAGACCCACAATTAAAGGAACCACAAGTTTTGACGGTCTTTTAGATTTAAGA ATGCGTTTAGGATTGCCGCCGGGCGGTATTATTGGTTTTCCAATCGTAATTACCGGAACGCACGAAAATCCTAAAATTAA AATTTTCAGTAAAACAGGCCAAAAAATTATTGGAGCGGTTTACGACGAAAAGAATAACAAAGTGGTAAAAAAAGAAAAAG TAAGCAAAAAGAAATCCTAA
Upstream 100 bases:
>100_bases AGAAAAAGAAAAACAGGAAAAAGCCAAAGAAGAGAAAGAAAAGCAAAAAGCCGAAGAAGCTAAGAAAGAGGCTGAAAAGA AATAATTAAAACTCTGCGCC
Downstream 100 bases:
>100_bases TTAAAATGCAATGAAAAAGAAGAAACAAAATGGCGGAAGTGCATTTGAAAAATTTGCTTCAAAAGTTTCAAAAGCGGCCG GAAGCACTACTGCTTTTATA
Product: AsmA family protein
Products: NA
Alternate protein names: Outer Membrane Assembly Protein; Outer Membrane Protein; Asma Family Protein
Number of amino acids: Translated: 939; Mature: 939
Protein sequence:
>939_residues MKTSYKNISLKILKWTGIVIAGILLLLFLIPLLFPGKVASEVKKIANERLDTKLEFSKSKLSFFTHFPSLTVSLDDISMT GSKPFGNDTLLKADQVAFGINLKRLIFDSEVKINKLYVSNALINVMVNEKGQANYNIYVAPEDRKNEKEDPNAPEEGTAI KLERIDLENCHVKYNDRSAKVLVDAKGFNYIGKGNLSDDIFDLNTDAKIDTLDFYYNRTAYLRKKAVRADLITRINTHAL SFILQKNELQINKLPLKFTGLFTILRDGYKINIKAASENTTVKDLLSVMPPEYLTWLEKTEISGKSDLVLSFKGDYNVSK KQKPNLAFNLKIKDGAVSYQNAPVPLTDFQMDLNAMLPSLDTEQLLVNLRTLRFKVGEKDYFNAYLHSKGLSEMNVDASI KGALDLAVVDAAIGLEKIDLKGILKTNIQAKGLFSTSKKLFPKTIGGISLRNGWLKTDYYPNPIKDITFVANVLNKAGTY EDLIVAVSPASFVFEGNPMYVNMALSDFSDLAYNAKIKGELNVGRIYQVFSQKGLDVTGYAKADLSLKGKQSYATTGQYS KLDNRGTILLKNIKATSELFPKAFFIKQGNFRFQNEKMWFEKFYASYGKSDFDINGYLLNTINYFLESHGTLSGDFNMKS KLINVDEFMALEKGENKDRKLEVDYAKEDHPKMSGVVMIPKNLNVSLTANADKVEYNGLNLNKLSGKVGITKGSFYLENT SLNIIDCILGVNAAYKDESPTSAHFDAHFTAKDFSVQRAYKEIPMFHDMVTVAEKAQGIISVDYKIKGDLNGNMGPIYES LEGGGTINLRDVKIKGLKLFEGVSSQTGQKGLDDPKMEGIEIKSNINNNLISIEPFTFSVASFRPTIKGTTSFDGLLDLR MRLGLPPGGIIGFPIVITGTHENPKIKIFSKTGQKIIGAVYDEKNNKVVKKEKVSKKKS
Sequences:
>Translated_939_residues MKTSYKNISLKILKWTGIVIAGILLLLFLIPLLFPGKVASEVKKIANERLDTKLEFSKSKLSFFTHFPSLTVSLDDISMT GSKPFGNDTLLKADQVAFGINLKRLIFDSEVKINKLYVSNALINVMVNEKGQANYNIYVAPEDRKNEKEDPNAPEEGTAI KLERIDLENCHVKYNDRSAKVLVDAKGFNYIGKGNLSDDIFDLNTDAKIDTLDFYYNRTAYLRKKAVRADLITRINTHAL SFILQKNELQINKLPLKFTGLFTILRDGYKINIKAASENTTVKDLLSVMPPEYLTWLEKTEISGKSDLVLSFKGDYNVSK KQKPNLAFNLKIKDGAVSYQNAPVPLTDFQMDLNAMLPSLDTEQLLVNLRTLRFKVGEKDYFNAYLHSKGLSEMNVDASI KGALDLAVVDAAIGLEKIDLKGILKTNIQAKGLFSTSKKLFPKTIGGISLRNGWLKTDYYPNPIKDITFVANVLNKAGTY EDLIVAVSPASFVFEGNPMYVNMALSDFSDLAYNAKIKGELNVGRIYQVFSQKGLDVTGYAKADLSLKGKQSYATTGQYS KLDNRGTILLKNIKATSELFPKAFFIKQGNFRFQNEKMWFEKFYASYGKSDFDINGYLLNTINYFLESHGTLSGDFNMKS KLINVDEFMALEKGENKDRKLEVDYAKEDHPKMSGVVMIPKNLNVSLTANADKVEYNGLNLNKLSGKVGITKGSFYLENT SLNIIDCILGVNAAYKDESPTSAHFDAHFTAKDFSVQRAYKEIPMFHDMVTVAEKAQGIISVDYKIKGDLNGNMGPIYES LEGGGTINLRDVKIKGLKLFEGVSSQTGQKGLDDPKMEGIEIKSNINNNLISIEPFTFSVASFRPTIKGTTSFDGLLDLR MRLGLPPGGIIGFPIVITGTHENPKIKIFSKTGQKIIGAVYDEKNNKVVKKEKVSKKKS >Mature_939_residues MKTSYKNISLKILKWTGIVIAGILLLLFLIPLLFPGKVASEVKKIANERLDTKLEFSKSKLSFFTHFPSLTVSLDDISMT GSKPFGNDTLLKADQVAFGINLKRLIFDSEVKINKLYVSNALINVMVNEKGQANYNIYVAPEDRKNEKEDPNAPEEGTAI KLERIDLENCHVKYNDRSAKVLVDAKGFNYIGKGNLSDDIFDLNTDAKIDTLDFYYNRTAYLRKKAVRADLITRINTHAL SFILQKNELQINKLPLKFTGLFTILRDGYKINIKAASENTTVKDLLSVMPPEYLTWLEKTEISGKSDLVLSFKGDYNVSK KQKPNLAFNLKIKDGAVSYQNAPVPLTDFQMDLNAMLPSLDTEQLLVNLRTLRFKVGEKDYFNAYLHSKGLSEMNVDASI KGALDLAVVDAAIGLEKIDLKGILKTNIQAKGLFSTSKKLFPKTIGGISLRNGWLKTDYYPNPIKDITFVANVLNKAGTY EDLIVAVSPASFVFEGNPMYVNMALSDFSDLAYNAKIKGELNVGRIYQVFSQKGLDVTGYAKADLSLKGKQSYATTGQYS KLDNRGTILLKNIKATSELFPKAFFIKQGNFRFQNEKMWFEKFYASYGKSDFDINGYLLNTINYFLESHGTLSGDFNMKS KLINVDEFMALEKGENKDRKLEVDYAKEDHPKMSGVVMIPKNLNVSLTANADKVEYNGLNLNKLSGKVGITKGSFYLENT SLNIIDCILGVNAAYKDESPTSAHFDAHFTAKDFSVQRAYKEIPMFHDMVTVAEKAQGIISVDYKIKGDLNGNMGPIYES LEGGGTINLRDVKIKGLKLFEGVSSQTGQKGLDDPKMEGIEIKSNINNNLISIEPFTFSVASFRPTIKGTTSFDGLLDLR MRLGLPPGGIIGFPIVITGTHENPKIKIFSKTGQKIIGAVYDEKNNKVVKKEKVSKKKS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 104711; Mature: 104711
Theoretical pI: Translated: 9.68; Mature: 9.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTSYKNISLKILKWTGIVIAGILLLLFLIPLLFPGKVASEVKKIANERLDTKLEFSKSK CCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECHHH LSFFTHFPSLTVSLDDISMTGSKPFGNDTLLKADQVAFGINLKRLIFDSEVKINKLYVSN EEEEEECCCEEEEEECEEECCCCCCCCCCEEEECCEEECCCEEEEEECCCCEEEEEEEEC ALINVMVNEKGQANYNIYVAPEDRKNEKEDPNAPEEGTAIKLERIDLENCHVKYNDRSAK EEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEECCCCEE VLVDAKGFNYIGKGNLSDDIFDLNTDAKIDTLDFYYNRTAYLRKKAVRADLITRINTHAL EEEEECCCCEEECCCCCCCEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHE SFILQKNELQINKLPLKFTGLFTILRDGYKINIKAASENTTVKDLLSVMPPEYLTWLEKT EEEEECCCEEEEECCEEHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCHHHHHHHHHH EISGKSDLVLSFKGDYNVSKKQKPNLAFNLKIKDGAVSYQNAPVPLTDFQMDLNAMLPSL CCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEECCEEECCCCCCCHHHHHEEHHHHCCCC DTEQLLVNLRTLRFKVGEKDYFNAYLHSKGLSEMNVDASIKGALDLAVVDAAIGLEKIDL CHHHHHHHEEEEEEECCCCHHHHHHHHHCCCCCCCCCCEECCCEEEEEEHHHCCCEEECC KGILKTNIQAKGLFSTSKKLFPKTIGGISLRNGWLKTDYYPNPIKDITFVANVLNKAGTY CCCEECCCEECEEECCCHHHCHHHCCCCEECCCEEECCCCCCCHHHHHHHHHHHHHCCCC EDLIVAVSPASFVFEGNPMYVNMALSDFSDLAYNAKIKGELNVGRIYQVFSQKGLDVTGY CEEEEEECCCEEEEECCCEEEEEEECCCCCCEECEEEECCCCHHHHHHHHHHCCCCEEEE AKADLSLKGKQSYATTGQYSKLDNRGTILLKNIKATSELFPKAFFIKQGNFRFQNEKMWF EEECEEECCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHCCEEEEEECCCEEEECCHHHH EKFYASYGKSDFDINGYLLNTINYFLESHGTLSGDFNMKSKLINVDEFMALEKGENKDRK HHHHHHHCCCCCCCCCEEHHHHHHHHHCCCCCCCCCCCHHEEECHHHHHHCCCCCCCCCE LEVDYAKEDHPKMSGVVMIPKNLNVSLTANADKVEYNGLNLNKLSGKVGITKGSFYLENT EEEECCCCCCCCCCCEEEECCCCCEEEEECCCEEEECCCCEEECCCEEEEEECCEEEECC SLNIIDCILGVNAAYKDESPTSAHFDAHFTAKDFSVQRAYKEIPMFHDMVTVAEKAQGII CCEEEEHHHCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHCCHHHHHHHHHHHCCCEE SVDYKIKGDLNGNMGPIYESLEGGGTINLRDVKIKGLKLFEGVSSQTGQKGLDDPKMEGI EEEEEEEECCCCCCCHHHHHHCCCCEEEEEEEEEECEEEECCCCCCCCCCCCCCCCCCCE EIKSNINNNLISIEPFTFSVASFRPTIKGTTSFDGLLDLRMRLGLPPGGIIGFPIVITGT EEECCCCCCEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEEEEC HENPKIKIFSKTGQKIIGAVYDEKNNKVVKKEKVSKKKS CCCCCEEEEECCCCEEEEEEEECCCCCEEHHHHHHCCCC >Mature Secondary Structure MKTSYKNISLKILKWTGIVIAGILLLLFLIPLLFPGKVASEVKKIANERLDTKLEFSKSK CCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECHHH LSFFTHFPSLTVSLDDISMTGSKPFGNDTLLKADQVAFGINLKRLIFDSEVKINKLYVSN EEEEEECCCEEEEEECEEECCCCCCCCCCEEEECCEEECCCEEEEEECCCCEEEEEEEEC ALINVMVNEKGQANYNIYVAPEDRKNEKEDPNAPEEGTAIKLERIDLENCHVKYNDRSAK EEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEECCCCEE VLVDAKGFNYIGKGNLSDDIFDLNTDAKIDTLDFYYNRTAYLRKKAVRADLITRINTHAL EEEEECCCCEEECCCCCCCEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHE SFILQKNELQINKLPLKFTGLFTILRDGYKINIKAASENTTVKDLLSVMPPEYLTWLEKT EEEEECCCEEEEECCEEHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCHHHHHHHHHH EISGKSDLVLSFKGDYNVSKKQKPNLAFNLKIKDGAVSYQNAPVPLTDFQMDLNAMLPSL CCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEECCEEECCCCCCCHHHHHEEHHHHCCCC DTEQLLVNLRTLRFKVGEKDYFNAYLHSKGLSEMNVDASIKGALDLAVVDAAIGLEKIDL CHHHHHHHEEEEEEECCCCHHHHHHHHHCCCCCCCCCCEECCCEEEEEEHHHCCCEEECC KGILKTNIQAKGLFSTSKKLFPKTIGGISLRNGWLKTDYYPNPIKDITFVANVLNKAGTY CCCEECCCEECEEECCCHHHCHHHCCCCEECCCEEECCCCCCCHHHHHHHHHHHHHCCCC EDLIVAVSPASFVFEGNPMYVNMALSDFSDLAYNAKIKGELNVGRIYQVFSQKGLDVTGY CEEEEEECCCEEEEECCCEEEEEEECCCCCCEECEEEECCCCHHHHHHHHHHCCCCEEEE AKADLSLKGKQSYATTGQYSKLDNRGTILLKNIKATSELFPKAFFIKQGNFRFQNEKMWF EEECEEECCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHCCEEEEEECCCEEEECCHHHH EKFYASYGKSDFDINGYLLNTINYFLESHGTLSGDFNMKSKLINVDEFMALEKGENKDRK HHHHHHHCCCCCCCCCEEHHHHHHHHHCCCCCCCCCCCHHEEECHHHHHHCCCCCCCCCE LEVDYAKEDHPKMSGVVMIPKNLNVSLTANADKVEYNGLNLNKLSGKVGITKGSFYLENT EEEECCCCCCCCCCCEEEECCCCCEEEEECCCEEEECCCCEEECCCEEEEEECCEEEECC SLNIIDCILGVNAAYKDESPTSAHFDAHFTAKDFSVQRAYKEIPMFHDMVTVAEKAQGII CCEEEEHHHCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHCCHHHHHHHHHHHCCCEE SVDYKIKGDLNGNMGPIYESLEGGGTINLRDVKIKGLKLFEGVSSQTGQKGLDDPKMEGI EEEEEEEECCCCCCCHHHHHHCCCCEEEEEEEEEECEEEECCCCCCCCCCCCCCCCCCCE EIKSNINNNLISIEPFTFSVASFRPTIKGTTSFDGLLDLRMRLGLPPGGIIGFPIVITGT EEECCCCCCEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEEEEC HENPKIKIFSKTGQKIIGAVYDEKNNKVVKKEKVSKKKS CCCCCEEEEECCCCEEEEEEEECCCCCEEHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA