| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is foxA [H]
Identifier: 146301957
GI number: 146301957
Start: 5074699
End: 5077086
Strand: Reverse
Name: foxA [H]
Synonym: Fjoh_4221
Alternate gene names: 146301957
Gene position: 5077086-5074699 (Counterclockwise)
Preceding gene: 146301958
Following gene: 146301955
Centisome position: 83.27
GC content: 34.55
Gene sequence:
>2388_bases ATGAAAGTAAAAATATTACTTCCGTTGTTAAGCTTTTGCTTAATGCTGCTTACAAGTGTAACTTCGTTCGCACAAACGGC TACCATTAAAGGTATGATTTCATTATCGACTAATGAAGCTGCAGATAATGTTTCAGTAACTCTAAAAGGAACACGTGTTG GAACTACAACTGATGCGCAGGGAAATTACGAAATAAAAAATGTTAAGCCTGGAACTTATACTATAAGAGTTTCGGCAGTA GGATTTTCATCAAAAGAAAAAAGCATTACCGTTAGTTCAGCTAATGAAATTGTAGAAAATTTTACATTAATTACTACATC AGAAAACCTTACTGAAGTATTTGTAAAAGGAAATGCAAACAAATACACAAAATCAGAAAGTGAGTACGTATCAAGAATGC AGGTTAAAAACCTTGAAAACTCACAAGTTTACAACGTAGTTACTAAAGAGTTAATGAAAGACCAATTGGTAACGAACCAA GACGAAGCGTTGAAAAACGTTCCGGGTTTATACCAATTATGGGGAGCTACTAACCGTGCAGGTGATGGAGGTTCTTGGTA TTCATTACGTGGATTTACAACTCAAAGTTTAGTAAGAAATGGTATTGCAGGAAAAGTAAACAGTAATTCTGATGCTGCAA ACCTTGAAAGAATTGAGGTTATCAAAGGACCTTCTGCTACATTATTTGGAAACGTACTTTCTTCTTACGGAGGTTTAATT AACCGTGTAACTAAAAAACCGTATGAAACTTTTGGAGGAGAGATTGCTTATCAGGCAGGAAGCTACGGATTTAACCGTGT TTCTGCTGACATCAATACACCATTAAACGATGACAATACAGCATTATTTAGATTAAACACTTCTTATAACAATACGAATA CTTTTCAGGATTATGGATCTTCAAGAAGTTTCTTTGTGGCGCCATCATTCTCTTATAAAGTAAACGATAAATTGACTTTA TCTCTTGATGCAGAAATTGGTGACCAAAATAACTCTGGAATGCCATTAATTTATCTTCCTTTTGATGTATCTGTTGCTGC CTTAGGGTTTAACAATGCAAAGGATCTTAATATGAACTTTAAAAGATCATTTTGGGGAGACGAATTCATAACCAATACAA AAACATTCAACGTTTTTGCTCAGGCAAATTATAAAATTTCTGATGAATGGACTTCTCAGTCTGTATTCAGCAGTACTTCT AACAGAGCTTCTGGGCTGCAGACTTGGTTCTATCTTTACCCAAATGAAGAAATATCTAGAAATGCATGGAATGCTAACGG AAAAGACAATGCAATTGAATTCCAGCAAAACTTTAATGGTGATTTCTTACTTTTCGGAAAAATGAGAAACCGTTTCTTAA TTGGTGGTGATTTATTCCACTCTACAAACAGATTAGGATACAGACTTTTACCAAATGGTGAATTTGATAAGATAGGATAT ACAGGAACTACGGCAGCTTATAATAACTTTAATCCAACAACTGTAAATGCTGAATTGGTAAATGGATTTGATTATAAAAC AAACAGCGCGCTTTCAACCTATAGTGCTTATGTTGCAGATGCTATTAACATTACAGAAAGTTTAATTGTTTCTGCAGCGG TACGTTTTGATCATTATGATAACCAAGGAACTACAGATGATACTACAGGTCAAAAAGCAGGTGATTTTTCACAAAATGCA TTTTCTCCAAAATTTGGTGTAGTGTATCAAGTAATAAAAGATCAGGTTTCTGTTTTTGGTAACTACCAAAATAGTTTTAC AAATATTGGATACATCAATGCAAATGTTGGAGGTGCTCTTCAAATGCAAAAATTTGATCCGGAAAGAGCAAACCAGTTTG AAGGAGGTATTAAAGTAAATGCTTTCCAAAACAAAGTAAGCGCTACGCTTAGCTACTACGATATTAAAGTAAAAGATATT GTAACTGCAGATCCAAGTTTACCAAACGCAAGTGTACAAAACGGAACTCAATACAGTAAAGGTTTTGAATTAGAAGTTAC AGCAAACCCAATTCCAGGATTAAACCTTCTTGTAGGTTACTCAAACAACGATTCTAAATTAAACGGATTAAGACCTGTAA CTGCAGGACCAGAAAACTTAATCAACTACTGGATCAGCTATAATTTACAAAATGCTACATTCAAAGGTTTAGGTTTAGGA TTTGGAGGTAACTACGGAGACGCTACGTATATCTACAACAACGGAACTGAAACTTTCGAACTTCCATCTTACGCTGTAAT CAATGCTGCTTTGTACTACGATCAGCCTAAATACAGAGTTTCATTAAAAGTAAACAACCTTACAGACGAATTGTACTTTA ATGGTTATACAACAATCAACGTTCAGGCACCTCGTACTTTTATGGGAAGCGTAACGTATAAATTCTAA
Upstream 100 bases:
>100_bases AACTTAATGAAATGCATTATTATCTGGAATAAATAAAAATAATTTGGTATAGTTTAACACAACCTATAAATTTGCCTTAT TCAAAATAAATCTAAATAAA
Downstream 100 bases:
>100_bases TAGGATTTAAGATTAAGAAATAAAAAAAGCCCGAACAAATCAATGTTCGGGTTTTTTTATTATAAAAGGTCAGTACTTAA AACCTTAGCAGCTTAGCATC
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 795; Mature: 795
Protein sequence:
>795_residues MKVKILLPLLSFCLMLLTSVTSFAQTATIKGMISLSTNEAADNVSVTLKGTRVGTTTDAQGNYEIKNVKPGTYTIRVSAV GFSSKEKSITVSSANEIVENFTLITTSENLTEVFVKGNANKYTKSESEYVSRMQVKNLENSQVYNVVTKELMKDQLVTNQ DEALKNVPGLYQLWGATNRAGDGGSWYSLRGFTTQSLVRNGIAGKVNSNSDAANLERIEVIKGPSATLFGNVLSSYGGLI NRVTKKPYETFGGEIAYQAGSYGFNRVSADINTPLNDDNTALFRLNTSYNNTNTFQDYGSSRSFFVAPSFSYKVNDKLTL SLDAEIGDQNNSGMPLIYLPFDVSVAALGFNNAKDLNMNFKRSFWGDEFITNTKTFNVFAQANYKISDEWTSQSVFSSTS NRASGLQTWFYLYPNEEISRNAWNANGKDNAIEFQQNFNGDFLLFGKMRNRFLIGGDLFHSTNRLGYRLLPNGEFDKIGY TGTTAAYNNFNPTTVNAELVNGFDYKTNSALSTYSAYVADAINITESLIVSAAVRFDHYDNQGTTDDTTGQKAGDFSQNA FSPKFGVVYQVIKDQVSVFGNYQNSFTNIGYINANVGGALQMQKFDPERANQFEGGIKVNAFQNKVSATLSYYDIKVKDI VTADPSLPNASVQNGTQYSKGFELEVTANPIPGLNLLVGYSNNDSKLNGLRPVTAGPENLINYWISYNLQNATFKGLGLG FGGNYGDATYIYNNGTETFELPSYAVINAALYYDQPKYRVSLKVNNLTDELYFNGYTTINVQAPRTFMGSVTYKF
Sequences:
>Translated_795_residues MKVKILLPLLSFCLMLLTSVTSFAQTATIKGMISLSTNEAADNVSVTLKGTRVGTTTDAQGNYEIKNVKPGTYTIRVSAV GFSSKEKSITVSSANEIVENFTLITTSENLTEVFVKGNANKYTKSESEYVSRMQVKNLENSQVYNVVTKELMKDQLVTNQ DEALKNVPGLYQLWGATNRAGDGGSWYSLRGFTTQSLVRNGIAGKVNSNSDAANLERIEVIKGPSATLFGNVLSSYGGLI NRVTKKPYETFGGEIAYQAGSYGFNRVSADINTPLNDDNTALFRLNTSYNNTNTFQDYGSSRSFFVAPSFSYKVNDKLTL SLDAEIGDQNNSGMPLIYLPFDVSVAALGFNNAKDLNMNFKRSFWGDEFITNTKTFNVFAQANYKISDEWTSQSVFSSTS NRASGLQTWFYLYPNEEISRNAWNANGKDNAIEFQQNFNGDFLLFGKMRNRFLIGGDLFHSTNRLGYRLLPNGEFDKIGY TGTTAAYNNFNPTTVNAELVNGFDYKTNSALSTYSAYVADAINITESLIVSAAVRFDHYDNQGTTDDTTGQKAGDFSQNA FSPKFGVVYQVIKDQVSVFGNYQNSFTNIGYINANVGGALQMQKFDPERANQFEGGIKVNAFQNKVSATLSYYDIKVKDI VTADPSLPNASVQNGTQYSKGFELEVTANPIPGLNLLVGYSNNDSKLNGLRPVTAGPENLINYWISYNLQNATFKGLGLG FGGNYGDATYIYNNGTETFELPSYAVINAALYYDQPKYRVSLKVNNLTDELYFNGYTTINVQAPRTFMGSVTYKF >Mature_795_residues MKVKILLPLLSFCLMLLTSVTSFAQTATIKGMISLSTNEAADNVSVTLKGTRVGTTTDAQGNYEIKNVKPGTYTIRVSAV GFSSKEKSITVSSANEIVENFTLITTSENLTEVFVKGNANKYTKSESEYVSRMQVKNLENSQVYNVVTKELMKDQLVTNQ DEALKNVPGLYQLWGATNRAGDGGSWYSLRGFTTQSLVRNGIAGKVNSNSDAANLERIEVIKGPSATLFGNVLSSYGGLI NRVTKKPYETFGGEIAYQAGSYGFNRVSADINTPLNDDNTALFRLNTSYNNTNTFQDYGSSRSFFVAPSFSYKVNDKLTL SLDAEIGDQNNSGMPLIYLPFDVSVAALGFNNAKDLNMNFKRSFWGDEFITNTKTFNVFAQANYKISDEWTSQSVFSSTS NRASGLQTWFYLYPNEEISRNAWNANGKDNAIEFQQNFNGDFLLFGKMRNRFLIGGDLFHSTNRLGYRLLPNGEFDKIGY TGTTAAYNNFNPTTVNAELVNGFDYKTNSALSTYSAYVADAINITESLIVSAAVRFDHYDNQGTTDDTTGQKAGDFSQNA FSPKFGVVYQVIKDQVSVFGNYQNSFTNIGYINANVGGALQMQKFDPERANQFEGGIKVNAFQNKVSATLSYYDIKVKDI VTADPSLPNASVQNGTQYSKGFELEVTANPIPGLNLLVGYSNNDSKLNGLRPVTAGPENLINYWISYNLQNATFKGLGLG FGGNYGDATYIYNNGTETFELPSYAVINAALYYDQPKYRVSLKVNNLTDELYFNGYTTINVQAPRTFMGSVTYKF
Specific function: Ferrioxamine binding and uptake, in association with the tonB protein. May play a role in intestinal colonization [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=711, Percent_Identity=24.4725738396624, Blast_Score=111, Evalue=2e-25, Organism=Escherichia coli, GI1787024, Length=741, Percent_Identity=22.6720647773279, Blast_Score=94, Evalue=4e-20, Organism=Escherichia coli, GI1787344, Length=741, Percent_Identity=23.6167341430499, Blast_Score=92, Evalue=1e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 87717; Mature: 87717
Theoretical pI: Translated: 5.50; Mature: 5.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVKILLPLLSFCLMLLTSVTSFAQTATIKGMISLSTNEAADNVSVTLKGTRVGTTTDAQ CEEEEEHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCC GNYEIKNVKPGTYTIRVSAVGFSSKEKSITVSSANEIVENFTLITTSENLTEVFVKGNAN CCEEEEEECCCEEEEEEEEECCCCCCCEEEEECHHHHHHCEEEEEECCCEEEEEEECCCC KYTKSESEYVSRMQVKNLENSQVYNVVTKELMKDQLVTNQDEALKNVPGLYQLWGATNRA CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHCCCCCC GDGGSWYSLRGFTTQSLVRNGIAGKVNSNSDAANLERIEVIKGPSATLFGNVLSSYGGLI CCCCCEEEEECCCHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH NRVTKKPYETFGGEIAYQAGSYGFNRVSADINTPLNDDNTALFRLNTSYNNTNTFQDYGS HHHHCCHHHHCCCEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCHHHCCC SRSFFVAPSFSYKVNDKLTLSLDAEIGDQNNSGMPLIYLPFDVSVAALGFNNAKDLNMNF CCEEEEECCCEEEECCEEEEEEEEECCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCC KRSFWGDEFITNTKTFNVFAQANYKISDEWTSQSVFSSTSNRASGLQTWFYLYPNEEISR CCCCCCCHHHCCCEEEEEEEEECEEECCCCCCHHHHHCCCCCCCCCEEEEEEECCCHHCC NAWNANGKDNAIEFQQNFNGDFLLFGKMRNRFLIGGDLFHSTNRLGYRLLPNGEFDKIGY CCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECHHCCCCCCCCEEECCCCCCCCCCC TGTTAAYNNFNPTTVNAELVNGFDYKTNSALSTYSAYVADAINITESLIVSAAVRFDHYD CCCCCEECCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCC NQGTTDDTTGQKAGDFSQNAFSPKFGVVYQVIKDQVSVFGNYQNSFTNIGYINANVGGAL CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEE QMQKFDPERANQFEGGIKVNAFQNKVSATLSYYDIKVKDIVTADPSLPNASVQNGTQYSK EEECCCCHHHHHCCCCEEEEEECCCCEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCC GFELEVTANPIPGLNLLVGYSNNDSKLNGLRPVTAGPENLINYWISYNLQNATFKGLGLG CEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHEEEEEEEECCCCEEEEEEEC FGGNYGDATYIYNNGTETFELPSYAVINAALYYDQPKYRVSLKVNNLTDELYFNGYTTIN CCCCCCCEEEEECCCCCEEECCCEEEEEEEEEECCCCEEEEEEEECCCCEEEECCEEEEE VQAPRTFMGSVTYKF EECCCEEECCEEECC >Mature Secondary Structure MKVKILLPLLSFCLMLLTSVTSFAQTATIKGMISLSTNEAADNVSVTLKGTRVGTTTDAQ CEEEEEHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCC GNYEIKNVKPGTYTIRVSAVGFSSKEKSITVSSANEIVENFTLITTSENLTEVFVKGNAN CCEEEEEECCCEEEEEEEEECCCCCCCEEEEECHHHHHHCEEEEEECCCEEEEEEECCCC KYTKSESEYVSRMQVKNLENSQVYNVVTKELMKDQLVTNQDEALKNVPGLYQLWGATNRA CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHCCCCCC GDGGSWYSLRGFTTQSLVRNGIAGKVNSNSDAANLERIEVIKGPSATLFGNVLSSYGGLI CCCCCEEEEECCCHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH NRVTKKPYETFGGEIAYQAGSYGFNRVSADINTPLNDDNTALFRLNTSYNNTNTFQDYGS HHHHCCHHHHCCCEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCHHHCCC SRSFFVAPSFSYKVNDKLTLSLDAEIGDQNNSGMPLIYLPFDVSVAALGFNNAKDLNMNF CCEEEEECCCEEEECCEEEEEEEEECCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCC KRSFWGDEFITNTKTFNVFAQANYKISDEWTSQSVFSSTSNRASGLQTWFYLYPNEEISR CCCCCCCHHHCCCEEEEEEEEECEEECCCCCCHHHHHCCCCCCCCCEEEEEEECCCHHCC NAWNANGKDNAIEFQQNFNGDFLLFGKMRNRFLIGGDLFHSTNRLGYRLLPNGEFDKIGY CCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECHHCCCCCCCCEEECCCCCCCCCCC TGTTAAYNNFNPTTVNAELVNGFDYKTNSALSTYSAYVADAINITESLIVSAAVRFDHYD CCCCCEECCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCC NQGTTDDTTGQKAGDFSQNAFSPKFGVVYQVIKDQVSVFGNYQNSFTNIGYINANVGGAL CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEE QMQKFDPERANQFEGGIKVNAFQNKVSATLSYYDIKVKDIVTADPSLPNASVQNGTQYSK EEECCCCHHHHHCCCCEEEEEECCCCEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCC GFELEVTANPIPGLNLLVGYSNNDSKLNGLRPVTAGPENLINYWISYNLQNATFKGLGLG CEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHEEEEEEEECCCCEEEEEEEC FGGNYGDATYIYNNGTETFELPSYAVINAALYYDQPKYRVSLKVNNLTDELYFNGYTTIN CCCCCCCEEEEECCCCCEEECCCEEEEEEEEEECCCCEEEEEEEECCCCEEEECCEEEEE VQAPRTFMGSVTYKF EECCCEEECCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11677609; 10103258; 7642488 [H]