Click here to switch to the map view.

The map label for this gene is csgD [C]

Identifier: 146301956

GI number: 146301956

Start: 5073826

End: 5074581

Strand: Direct

Name: csgD [C]

Synonym: Fjoh_4220

Alternate gene names: 146301956

Gene position: 5073826-5074581 (Clockwise)

Preceding gene: 146301954

Following gene: 146301961

Centisome position: 83.22

GC content: 31.75

Gene sequence:

>756_bases
ATGAAAAACATAAAAAATGATCTGAATAAAAAGTTACTGCATCAGAATAATTCTGCCGATTTAAAAACTATCACGCAATT
AAAAATCTGCCAGAAAACTGCACAAAATTTTGCCGAATTAGAAAACGGAATTGCTGTTCTGAGCGATCTGTATCATAATA
AAAGTTATGTGTATTCTGGAAAAATTGCAGATGAACTAAACATTTTCAAAAAAAATCAAATGCAGGAATTAGAAAGCATT
TGGGAAGAAGAACTTTTTGATAAATTGAATAATGAAGATGTTCTGCAAAAATATCTTTTAGAGCTTCAGTTTTTTCAGTT
CATTAAAACAGTTCCAATTCATGAAAGAAGGGATTTTTGCGTGATAAGCAGATTAAGATTCAAAGACAATACGACCAATA
AATCTTTACTGCACAAGATGTTTTATTTCTCGAATGAACATGAAGATATCGAACTGGCTTTATGTCTTTACAATTTCGAT
TTTTCGCAGGCTTTTCATTACGAAGGGAAAATTATAAATACAGCAAACGGAAACGTTATGCAGCAAAATGAAGCCGGAAA
TTTTTCTTTTCTTTCTTCAAGAGAAAAGGAGATTCTAAAAATGCTTCAAAAAGGCAAACAGAGTAAAGAAATTGCTTCTC
TTCTATTCATAAGTAAAAATACCGTCAGCCGGCACAGGCAGAATATTCTCGAAAAAATGAAAGTAAACAATACGGCAGAA
GCTTGTACACTTGCTGTAAAGCTGAAATGGATATAG

Upstream 100 bases:

>100_bases
AATTTAAATCCCATTTTAATTATTATATTTCAATCCAAAAAATCATACAAATATATTTTCCATACAACCTTAAGACAATA
CTTATAAATAACCATTTTTG

Downstream 100 bases:

>100_bases
TTTTTTTAAGGTGCTGAGATGCTAAGCTGCTAAGGTTTTAAGTACTGACCTTTTATAATAAAAAAACCCGAACATTGATT
TGTTCGGGCTTTTTTTATTT

Product: response regulator receiver protein

Products: NA

Alternate protein names: Transcriptional Regulator; Response Regulator Receiver Protein; LuxR Family Transcriptional Regulator GerE; Transcriptional Regulator GerE

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MKNIKNDLNKKLLHQNNSADLKTITQLKICQKTAQNFAELENGIAVLSDLYHNKSYVYSGKIADELNIFKKNQMQELESI
WEEELFDKLNNEDVLQKYLLELQFFQFIKTVPIHERRDFCVISRLRFKDNTTNKSLLHKMFYFSNEHEDIELALCLYNFD
FSQAFHYEGKIINTANGNVMQQNEAGNFSFLSSREKEILKMLQKGKQSKEIASLLFISKNTVSRHRQNILEKMKVNNTAE
ACTLAVKLKWI

Sequences:

>Translated_251_residues
MKNIKNDLNKKLLHQNNSADLKTITQLKICQKTAQNFAELENGIAVLSDLYHNKSYVYSGKIADELNIFKKNQMQELESI
WEEELFDKLNNEDVLQKYLLELQFFQFIKTVPIHERRDFCVISRLRFKDNTTNKSLLHKMFYFSNEHEDIELALCLYNFD
FSQAFHYEGKIINTANGNVMQQNEAGNFSFLSSREKEILKMLQKGKQSKEIASLLFISKNTVSRHRQNILEKMKVNNTAE
ACTLAVKLKWI
>Mature_251_residues
MKNIKNDLNKKLLHQNNSADLKTITQLKICQKTAQNFAELENGIAVLSDLYHNKSYVYSGKIADELNIFKKNQMQELESI
WEEELFDKLNNEDVLQKYLLELQFFQFIKTVPIHERRDFCVISRLRFKDNTTNKSLLHKMFYFSNEHEDIELALCLYNFD
FSQAFHYEGKIINTANGNVMQQNEAGNFSFLSSREKEILKMLQKGKQSKEIASLLFISKNTVSRHRQNILEKMKVNNTAE
ACTLAVKLKWI

Specific function: Necessary For Transcription Of The Csgab Operon. May Have The Capability To Respond To Starvation And/Or High Cell Density By Activating Csgba Transcription. [C]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29458; Mature: 29458

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNIKNDLNKKLLHQNNSADLKTITQLKICQKTAQNFAELENGIAVLSDLYHNKSYVYSG
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
KIADELNIFKKNQMQELESIWEEELFDKLNNEDVLQKYLLELQFFQFIKTVPIHERRDFC
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
VISRLRFKDNTTNKSLLHKMFYFSNEHEDIELALCLYNFDFSQAFHYEGKIINTANGNVM
HHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECCHHHHHCCCCEEEECCCCCEE
QQNEAGNFSFLSSREKEILKMLQKGKQSKEIASLLFISKNTVSRHRQNILEKMKVNNTAE
ECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
ACTLAVKLKWI
HEEEEEEEECC
>Mature Secondary Structure
MKNIKNDLNKKLLHQNNSADLKTITQLKICQKTAQNFAELENGIAVLSDLYHNKSYVYSG
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
KIADELNIFKKNQMQELESIWEEELFDKLNNEDVLQKYLLELQFFQFIKTVPIHERRDFC
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
VISRLRFKDNTTNKSLLHKMFYFSNEHEDIELALCLYNFDFSQAFHYEGKIINTANGNVM
HHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECCHHHHHCCCCEEEECCCCCEE
QQNEAGNFSFLSSREKEILKMLQKGKQSKEIASLLFISKNTVSRHRQNILEKMKVNNTAE
ECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
ACTLAVKLKWI
HEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA