| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
Click here to switch to the map view.
The map label for this gene is glcI [H]
Identifier: 146301912
GI number: 146301912
Start: 5011062
End: 5013716
Strand: Reverse
Name: glcI [H]
Synonym: Fjoh_4176
Alternate gene names: 146301912
Gene position: 5013716-5011062 (Counterclockwise)
Preceding gene: 146301913
Following gene: 146301911
Centisome position: 82.23
GC content: 38.91
Gene sequence:
>2655_bases ATGAAGAAAAATAAACTTCAAGGATTATCCATTTTGACAGCACTGTTTCTGGTGTTTTCAAGTTTAATGTATGGTCAGGG ACCAGTTCCCTTTACTATTGCCAATAATTCAACTTTTGCCGACAGCGATTTATATGTAGCCATTGTCGGGATCGATTATA CAACCGGAAATCATGTTTGGGTAAATGCCAAAACAAGTCAGGTTTTGCCAATGAATGCTTCTTATAATACGGTAACCGGA CCAACTTACGGCGGTAATACAGGACCGGGACAAAATTCAAAATACGCAGCTTGTTTTACCAAGTTGAGTGAAATTCCAAA TAAAACCTTCACTTTACCTTTAATCGCAGGATGCCGTGTTTTTATTTCTAAAGGTTCACAATTGTATTTCTACTTTTTTG GCGCAAGCGGAGCACCTTCCGGCTATGCATCGCCAAATCCACAGAATGCTACAGATCCAAATCAGGGAATTTTATATGAA ATGATTGAATTAACAAACAATCAGCATGGATTCTTCGGAAACCCAACACGAGTTGATTCGTATAAATATCCAATGGGATT GGAATTATTTGGAGCAAATGGTTACCAAAAGAAAGTGGGAGATTTAAAAAAGCATGCTGAAATTGTTGCGGCTTTTAAAG CTAATGTTTCTGCAGAATTTCAAGGCTGCGTTAACGATGCAACAGGAGAAATTACAGCACCGTCTAAAACTCCTGCTTAT GCTGAAGGATCAGGACAATATGCAAATTATTTAAAATCGTATATCGACGCAATCTGGAATAAATACAAAAATGAAGATTT AATTTTTTATGCCGGAGATGCCGGAGTTTTTAAAGGAAGAGTTATTGGCGAACAGCTGGAAATGGTTGGGCAGTCAGGTG CTTTTGTTGGAAGAACCGGACGTGTGCAAAACAGGCCGACTACTCAGGAAGCTCTTGAAGGAAAAGGTGTTCTGGACAGA AGACTGGTTGACGGAGATTTAGATCTTGTAATTCAATCACAGTTAACAGCTGCAATTAACCGTCACGTTGTAAACACTAC AACAGCAAATCCGGGACAGCAAAACTGGTACGATGCATCGAAATATTATCAGGTAAACCCAACAAACCATTATTCTAAAT TCTGGCATTTACCGGGAATCAATATTGACAATCTTGCTTATGGATTTGCTTATGATGATGTTGCAGATCAGTCACCATCG CTTCATTCGCCACAGCCAACAAAGGTTATTGCTACTTTTGGAGGTTATGCAGGATTAACACCTTCAGTTCCGGCTTCTAC AGACGTTATTACGGTTTATAAAGACTGTAACTACACTGGATTCTCAGGCGGATTAACAATAGGAGATTACAATCTGGCTC GTTTAAATTCTTTAGGAGTTTTAAACGATGATATTTCTTCGCTTAAAATCACTCAGGGTTATCAGGCGATTTTGTATATG GATGATAATTTTACAGGAACTTCAACTGTAATCAATTCTGATAATTCTTGTTTAAACACAACGTGGAATGATAAAGTAAG TTCGATAAGAGTTATTGCAAACGGAACTACAACTTTAGGAAACCAGACTTTCTTCCTTCAAAACAGAAACAGCGGTTTAT ACATGGACGTTTGGAATTCAAGCATGTCAAACGGTGCAGGAATCAACCAGGGCGCTTTGAATTCAGGAAACAATCAGAAA TTTACTTTCACGCATTTAGGCGACGGAATGTATAAAATCATTGCCAACCACAGCGGTATGTCAATGGATATTAACAATTT CAACAAAGCCAATGGTGCAAGAGTAGAGCAGTATCCATACAATGCGACAACAAACCAACAGTTTATTTTGGTTTCTACAG GCGATGGGTATTACAAAATTGTAGCCCGTCATAGCGGCAGAATCGTTGAGGTAGCAGGAGCAAGCACAGCTTCTGGAGCT ATTGTACAGCAATGGGATAACAATAATCAAACTTGCGGACAATGGAAATTAGTTCCGGCAGCAAGTTCACAGACATCGGT TTTAATTCAGGCAGAAGACTATTCAGCGATGAGTGGTATTCAGGTTGAACCAACTACAGATACTGGCGGAGGATCAAATG TAGGTTACACAGAAACAGGCGACTGGTTAGCGTATAACAACATCAATTTCCCAACAACAGGATCCTATTTAATAGAATAC CGAGTGGCAAGTGCTGTTACAGGCGGCAGATTATCATCTGATTTAAACGGAGGAACAATTGTTTTAGGAAATGTTGATAT CCCTAATACTGGAGGATGGCAAAACTGGCAGACTGTTTCACAAACCGTGAACGTTAATGCAGGAACGTACAATTTCGGAA TTTATATTCAAAATACCGGAATGAACATCAACTGGATTAAAATTACAAAAGTAGGTGCAGGATTGGCTGCTAAAACGGCT TCGGTTCAAACAGAAGAAGCGCCGGAAGAAACCGTTTTAAATGTTTATCCAAGTCCGGTTGAAAACACATTGTTTACCAC AACAGACCTTTCAGGAGGAGATGTAAAAATCGTTAATGCACAATCAGGAAATACTGTTTTATCGAAAAAAAGCAATGGCA ACAGTATCGATGTTTCGCATTTAGCAAAAGGAATCTATTTGATTGTTTTTGAGAAAGACGGCAAACAGACGATCAAACGT TTTATCAAAAAATAG
Upstream 100 bases:
>100_bases GATAGCACCACGAATTGCACCTGACGGATTGTTTAAAGTCATTTTTTAAAAGATGACTTAGGTTTAGAATCTATTTATGT AACCCCAAAATTATTTAGAT
Downstream 100 bases:
>100_bases TTTTAAAAAGTGATCTCAGGCTTTAGATCTTAGGTAATAATTTAGGTAGTGTTAGTTCTGCAAAATTAGACTGCACAGCA GTCAAATCTAAAATCTAAAG
Product: carbohydrate-binding family 6 protein
Products: NA
Alternate protein names: (1->3)-beta-glucan endohydrolase; (1->3)-beta-glucanase [H]
Number of amino acids: Translated: 884; Mature: 884
Protein sequence:
>884_residues MKKNKLQGLSILTALFLVFSSLMYGQGPVPFTIANNSTFADSDLYVAIVGIDYTTGNHVWVNAKTSQVLPMNASYNTVTG PTYGGNTGPGQNSKYAACFTKLSEIPNKTFTLPLIAGCRVFISKGSQLYFYFFGASGAPSGYASPNPQNATDPNQGILYE MIELTNNQHGFFGNPTRVDSYKYPMGLELFGANGYQKKVGDLKKHAEIVAAFKANVSAEFQGCVNDATGEITAPSKTPAY AEGSGQYANYLKSYIDAIWNKYKNEDLIFYAGDAGVFKGRVIGEQLEMVGQSGAFVGRTGRVQNRPTTQEALEGKGVLDR RLVDGDLDLVIQSQLTAAINRHVVNTTTANPGQQNWYDASKYYQVNPTNHYSKFWHLPGINIDNLAYGFAYDDVADQSPS LHSPQPTKVIATFGGYAGLTPSVPASTDVITVYKDCNYTGFSGGLTIGDYNLARLNSLGVLNDDISSLKITQGYQAILYM DDNFTGTSTVINSDNSCLNTTWNDKVSSIRVIANGTTTLGNQTFFLQNRNSGLYMDVWNSSMSNGAGINQGALNSGNNQK FTFTHLGDGMYKIIANHSGMSMDINNFNKANGARVEQYPYNATTNQQFILVSTGDGYYKIVARHSGRIVEVAGASTASGA IVQQWDNNNQTCGQWKLVPAASSQTSVLIQAEDYSAMSGIQVEPTTDTGGGSNVGYTETGDWLAYNNINFPTTGSYLIEY RVASAVTGGRLSSDLNGGTIVLGNVDIPNTGGWQNWQTVSQTVNVNAGTYNFGIYIQNTGMNINWIKITKVGAGLAAKTA SVQTEEAPEETVLNVYPSPVENTLFTTTDLSGGDVKIVNAQSGNTVLSKKSNGNSIDVSHLAKGIYLIVFEKDGKQTIKR FIKK
Sequences:
>Translated_884_residues MKKNKLQGLSILTALFLVFSSLMYGQGPVPFTIANNSTFADSDLYVAIVGIDYTTGNHVWVNAKTSQVLPMNASYNTVTG PTYGGNTGPGQNSKYAACFTKLSEIPNKTFTLPLIAGCRVFISKGSQLYFYFFGASGAPSGYASPNPQNATDPNQGILYE MIELTNNQHGFFGNPTRVDSYKYPMGLELFGANGYQKKVGDLKKHAEIVAAFKANVSAEFQGCVNDATGEITAPSKTPAY AEGSGQYANYLKSYIDAIWNKYKNEDLIFYAGDAGVFKGRVIGEQLEMVGQSGAFVGRTGRVQNRPTTQEALEGKGVLDR RLVDGDLDLVIQSQLTAAINRHVVNTTTANPGQQNWYDASKYYQVNPTNHYSKFWHLPGINIDNLAYGFAYDDVADQSPS LHSPQPTKVIATFGGYAGLTPSVPASTDVITVYKDCNYTGFSGGLTIGDYNLARLNSLGVLNDDISSLKITQGYQAILYM DDNFTGTSTVINSDNSCLNTTWNDKVSSIRVIANGTTTLGNQTFFLQNRNSGLYMDVWNSSMSNGAGINQGALNSGNNQK FTFTHLGDGMYKIIANHSGMSMDINNFNKANGARVEQYPYNATTNQQFILVSTGDGYYKIVARHSGRIVEVAGASTASGA IVQQWDNNNQTCGQWKLVPAASSQTSVLIQAEDYSAMSGIQVEPTTDTGGGSNVGYTETGDWLAYNNINFPTTGSYLIEY RVASAVTGGRLSSDLNGGTIVLGNVDIPNTGGWQNWQTVSQTVNVNAGTYNFGIYIQNTGMNINWIKITKVGAGLAAKTA SVQTEEAPEETVLNVYPSPVENTLFTTTDLSGGDVKIVNAQSGNTVLSKKSNGNSIDVSHLAKGIYLIVFEKDGKQTIKR FIKK >Mature_884_residues MKKNKLQGLSILTALFLVFSSLMYGQGPVPFTIANNSTFADSDLYVAIVGIDYTTGNHVWVNAKTSQVLPMNASYNTVTG PTYGGNTGPGQNSKYAACFTKLSEIPNKTFTLPLIAGCRVFISKGSQLYFYFFGASGAPSGYASPNPQNATDPNQGILYE MIELTNNQHGFFGNPTRVDSYKYPMGLELFGANGYQKKVGDLKKHAEIVAAFKANVSAEFQGCVNDATGEITAPSKTPAY AEGSGQYANYLKSYIDAIWNKYKNEDLIFYAGDAGVFKGRVIGEQLEMVGQSGAFVGRTGRVQNRPTTQEALEGKGVLDR RLVDGDLDLVIQSQLTAAINRHVVNTTTANPGQQNWYDASKYYQVNPTNHYSKFWHLPGINIDNLAYGFAYDDVADQSPS LHSPQPTKVIATFGGYAGLTPSVPASTDVITVYKDCNYTGFSGGLTIGDYNLARLNSLGVLNDDISSLKITQGYQAILYM DDNFTGTSTVINSDNSCLNTTWNDKVSSIRVIANGTTTLGNQTFFLQNRNSGLYMDVWNSSMSNGAGINQGALNSGNNQK FTFTHLGDGMYKIIANHSGMSMDINNFNKANGARVEQYPYNATTNQQFILVSTGDGYYKIVARHSGRIVEVAGASTASGA IVQQWDNNNQTCGQWKLVPAASSQTSVLIQAEDYSAMSGIQVEPTTDTGGGSNVGYTETGDWLAYNNINFPTTGSYLIEY RVASAVTGGRLSSDLNGGTIVLGNVDIPNTGGWQNWQTVSQTVNVNAGTYNFGIYIQNTGMNINWIKITKVGAGLAAKTA SVQTEEAPEETVLNVYPSPVENTLFTTTDLSGGDVKIVNAQSGNTVLSKKSNGNSIDVSHLAKGIYLIVFEKDGKQTIKR FIKK
Specific function: Lysis of cellular walls containing beta-1,3-glucans. Implicated in the defense against fungal pathogens [H]
COG id: COG5498
COG function: function code M; Predicted glycosyl hydrolase
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ricin B-type lectin domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008997 - InterPro: IPR000772 - InterPro: IPR006311 [H]
Pfam domain/function: PF00652 Ricin_B_lectin [H]
EC number: =3.2.1.39 [H]
Molecular weight: Translated: 95421; Mature: 95421
Theoretical pI: Translated: 6.45; Mature: 6.45
Prosite motif: PS50231 RICIN_B_LECTIN ; PS50915 CRYSTALLIN_BETA_GAMMA L=RR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKNKLQGLSILTALFLVFSSLMYGQGPVPFTIANNSTFADSDLYVAIVGIDYTTGNHVW CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCEECCCCEEEEEEEEEEECCCEEE VNAKTSQVLPMNASYNTVTGPTYGGNTGPGQNSKYAACFTKLSEIPNKTFTLPLIAGCRV EECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEHHHCCEE FISKGSQLYFYFFGASGAPSGYASPNPQNATDPNQGILYEMIELTNNQHGFFGNPTRVDS EEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC YKYPMGLELFGANGYQKKVGDLKKHAEIVAAFKANVSAEFQGCVNDATGEITAPSKTPAY CCCCCCEEEECCCCCHHHHHHHHHHHHEEEEHHCCCCEEEHHCCCCCCCCEECCCCCCCC AEGSGQYANYLKSYIDAIWNKYKNEDLIFYAGDAGVFKGRVIGEQLEMVGQSGAFVGRTG CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEECEEHHHHHHHHCCCCCEEECCC RVQNRPTTQEALEGKGVLDRRLVDGDLDLVIQSQLTAAINRHVVNTTTANPGQQNWYDAS CCCCCCCHHHHHCCCCCCHHEEECCCCEEEEHHHHHHHHHCCEEEECCCCCCCCCCCCCC KYYQVNPTNHYSKFWHLPGINIDNLAYGFAYDDVADQSPSLHSPQPTKVIATFGGYAGLT CEEEECCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCC PSVPASTDVITVYKDCNYTGFSGGLTIGDYNLARLNSLGVLNDDISSLKITQGYQAILYM CCCCCCCCEEEEEECCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCEEEECCCEEEEEE DDNFTGTSTVINSDNSCLNTTWNDKVSSIRVIANGTTTLGNQTFFLQNRNSGLYMDVWNS ECCCCCCEEEEECCCCEECCCCCCCCCEEEEEECCCEECCCEEEEEEECCCCEEEEECCC SMSNGAGINQGALNSGNNQKFTFTHLGDGMYKIIANHSGMSMDINNFNKANGARVEQYPY CCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCEEECCCCCCCCCCEEEECCC NATTNQQFILVSTGDGYYKIVARHSGRIVEVAGASTASGAIVQQWDNNNQTCGQWKLVPA CCCCCCEEEEEECCCCEEEEEEECCCCEEEEECCCCCCCCEEEEECCCCCCCCEEEEEEC ASSQTSVLIQAEDYSAMSGIQVEPTTDTGGGSNVGYTETGDWLAYNNINFPTTGSYLIEY CCCCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEE RVASAVTGGRLSSDLNGGTIVLGNVDIPNTGGWQNWQTVSQTVNVNAGTYNFGIYIQNTG EEHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEEECCCEEEEEEEEEECC MNINWIKITKVGAGLAAKTASVQTEEAPEETVLNVYPSPVENTLFTTTDLSGGDVKIVNA CEEEEEEEEEECCCCEECCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCEEEEEC QSGNTVLSKKSNGNSIDVSHLAKGIYLIVFEKDGKQTIKRFIKK CCCCEEEEECCCCCEEEHHHHCCCEEEEEEECCCHHHHHHHHCC >Mature Secondary Structure MKKNKLQGLSILTALFLVFSSLMYGQGPVPFTIANNSTFADSDLYVAIVGIDYTTGNHVW CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCEECCCCEEEEEEEEEEECCCEEE VNAKTSQVLPMNASYNTVTGPTYGGNTGPGQNSKYAACFTKLSEIPNKTFTLPLIAGCRV EECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEHHHCCEE FISKGSQLYFYFFGASGAPSGYASPNPQNATDPNQGILYEMIELTNNQHGFFGNPTRVDS EEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC YKYPMGLELFGANGYQKKVGDLKKHAEIVAAFKANVSAEFQGCVNDATGEITAPSKTPAY CCCCCCEEEECCCCCHHHHHHHHHHHHEEEEHHCCCCEEEHHCCCCCCCCEECCCCCCCC AEGSGQYANYLKSYIDAIWNKYKNEDLIFYAGDAGVFKGRVIGEQLEMVGQSGAFVGRTG CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEECEEHHHHHHHHCCCCCEEECCC RVQNRPTTQEALEGKGVLDRRLVDGDLDLVIQSQLTAAINRHVVNTTTANPGQQNWYDAS CCCCCCCHHHHHCCCCCCHHEEECCCCEEEEHHHHHHHHHCCEEEECCCCCCCCCCCCCC KYYQVNPTNHYSKFWHLPGINIDNLAYGFAYDDVADQSPSLHSPQPTKVIATFGGYAGLT CEEEECCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCC PSVPASTDVITVYKDCNYTGFSGGLTIGDYNLARLNSLGVLNDDISSLKITQGYQAILYM CCCCCCCCEEEEEECCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCEEEECCCEEEEEE DDNFTGTSTVINSDNSCLNTTWNDKVSSIRVIANGTTTLGNQTFFLQNRNSGLYMDVWNS ECCCCCCEEEEECCCCEECCCCCCCCCEEEEEECCCEECCCEEEEEEECCCCEEEEECCC SMSNGAGINQGALNSGNNQKFTFTHLGDGMYKIIANHSGMSMDINNFNKANGARVEQYPY CCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCEEECCCCCCCCCCEEEECCC NATTNQQFILVSTGDGYYKIVARHSGRIVEVAGASTASGAIVQQWDNNNQTCGQWKLVPA CCCCCCEEEEEECCCCEEEEEEECCCCEEEEECCCCCCCCEEEEECCCCCCCCEEEEEEC ASSQTSVLIQAEDYSAMSGIQVEPTTDTGGGSNVGYTETGDWLAYNNINFPTTGSYLIEY CCCCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEE RVASAVTGGRLSSDLNGGTIVLGNVDIPNTGGWQNWQTVSQTVNVNAGTYNFGIYIQNTG EEHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEEECCCEEEEEEEEEECC MNINWIKITKVGAGLAAKTASVQTEEAPEETVLNVYPSPVENTLFTTTDLSGGDVKIVNA CEEEEEEEEEECCCCEECCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCEEEEEC QSGNTVLSKKSNGNSIDVSHLAKGIYLIVFEKDGKQTIKRFIKK CCCCEEEEECCCCCEEEHHHHCCCEEEEEEECCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA