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The map label for this gene is agaB34 [H]

Identifier: 146301910

GI number: 146301910

Start: 5006226

End: 5009099

Strand: Reverse

Name: agaB34 [H]

Synonym: Fjoh_4174

Alternate gene names: 146301910

Gene position: 5009099-5006226 (Counterclockwise)

Preceding gene: 146301911

Following gene: 146301909

Centisome position: 82.16

GC content: 37.61

Gene sequence:

>2874_bases
ATGAAAAACAATTACAGACTCAGTTTGACATTTCTTGTCTTTCTGGCTTTCAGCGGTTTTGTTGCTGCGCAGACTTCACT
AGGTTCGAGTAAGTCTTTTATGAATACTTTAAAGAAAGAATTAACCAATTCTGCAGCTTCAAAAAGTACTGACAAAACAA
TTTTGCTTCAGGCAGAAAAAACAAGTTTCAACGGAAAAATAAACTTTAAAGAGTCGAACGCTTCGAGTGAATTTTTAATT
GGAGAAATTAAAAACATTGCCGAATCATCTTTTTACATCAAAGTAAAAGACAAATCATTAGAAGGACACATTCTTCTAAA
AAAAACAAAAGAAGCCTACAAGTATTTTTCTGATGCACAAGGAAATGCGTTTGTAGAAAAAGTCGATATCAATACTTTGG
TTTGTATTGATTATAAAAACCTGCCAACAAAAGAGAATACAACAAGTAAAACAGCAGCTGCAGCAGAAATTGCTCCGGCT
CTGCTGGATTTACAAAGTTTACCGGGTGCAGCAGGTTGTGTCATGCTGGATTTTGACGGTTATTATATGCCGGCAGGAAA
TCTTTGGAACAACGGAAATGCCATTAATGCAGCACCTTCTGGAATGAACGATGCAGCAGTACAGCAGCATTGGGAAGTAG
TTTCAGAAGATTACCGTCCGTTTAATGTAAACGTTACTACAAACGAAGCCGTTTTTAATTCTTATCCTAAAAACAGAAGA
ATGCGCGTTGTTGTTACGCCAACTAATACTGCAGCTCCGGGCGCAGGAGGAGTAGCGTATATTGGATCTTTCAATTGGGA
TAATGATGTGCCTTGCTGGGTATTTATCACGTCTGGAAAATCAGGTGGAGATGCTTCTTCTCATGAAGTAGGACATACTT
TTGATCTGGGTCATGACGGACGCACAAGTCCGGCAGAAGATTATTTCGTAGGTTTAGACGGAACTTCATGGGCGCCTATT
ATGGGTGCAGGTTATTACAGACCTGTTGTACAATGGAGTAAAGGCGAATACAATAACGCGAACAACAAACAAGATGATGT
GGCGATTATTGCCAGCGCTAAATTTGGAGTAGGATACCGCGGAGATGATTACGGAAACAATATCGCTTCTGCAGCTACTT
TAGATTACAATTCAAGCGGACAGATCAATCAGAAAAACGGAATTATTTCAAGTGAAGCCGATTATGATTTCTTCTCTTTT
ACAACAGGAGGAGGAAATGTTTCTATAAATGCAAATACCGTTTCAAGAGACGGAAATCTGCATCTTTTAATCCGATTATT
TAATTCGGCAGGAACAGAAATGGGAACGTATTGGAATTCAGATCCATTTGCTTTAAATGCTTCTATGAATGTTAATCTTC
CGGCTGGTAAATACTACATTGGAGTTGATGGAACAGGAGCAGGAAATGCCGGAAGCGGCGGTTATTCGGCTTATGGTTCT
ATAGGAAGTTATTCTATTACCGGAACTATTCCGCCGGGAGGAAATATAAGTCCGTCAACTGATGTGATTACGGTTTATAA
AGACTGTAATTATACAGGTTTCTCAGGCGGATTGACAATTGGCGATTATAATCTGGCACGTTTAAATTCTTTAGGAGTTT
TAAATGATGATATTTCTTCACTTAGGATTACTCAGGGTTATCAGGCGATTTTATATCAGGATGATAATTTTGGCGGCGCT
TCAACAGTAATTAATTCTGATAATTCTTGTTTAAATACAACTTGGAATGATAAAGTAAGTTCGATTAGAGTTATTGCAAA
CGGAACAACAACTTTAGGAAATCAGACTTTCTTTTTACAAAACAGAAACAGCGGTTTATACATGGACGTTTGGAATTCAA
GCATGTCAAACGGATCTGGAATAAATCAAGGCGGACTTAATTCTGGAAATAATCAAAAGTTTACGTTTACTCATTTAGGA
GACGGAATGTATAAAATTATTGCCAATCACAGCGGTCAGTCAATGGATGTCAATAATTTCAATAAAGCCAATGGTGCGCG
TGTAGAACAATATCCGTATAACGGAACTACAAATCAGCAGTTTATTTTAGTTTCAACAGGAGACGGTTTTTATAAAATTG
TAGCACGTCACAGCGGCAGAATTGTTGAGGTTGCCGGAGCGAGTACAGCTTCTGGAGCTATTGTACAGCAGTGGGATAAC
AACAACCAGACTTGCGGACAATGGAAATTAATAGCTACAACAACTTCTCAAACTTCTACTTTAATTCAGGCTGAAGATTA
TTCTGCCATGAGCGGTATTCAAGTTGAGCCAACTACAGATACAGGAGGAGGTTCAAACGTTGGTTATACTGAAACAGGAG
ACTGGATGGCATACAACAATATTAATTTCCCAACTACAGGTTCGTATTTAATTGAATATCGTGTTGCAAGCGGTGTTATC
GGCGGCAGATTATCATCTGATTTAAATGGAGGAACTATTATTTTAGGAAATGTTGATATTCCAAACACAGGCGGATGGCA
GAACTGGCAGACAGTTACGCAGACTGTAAACGTAAATGCAGGAACATATAATTTTGGTATCTACATTCAAAATACCGGAA
TGAACATTAACTGGATTAGAATTACTAAAATTGGAAATGCTGCCGCAACAGCAGCGGTTGCAGCAATTTCTGCCGAAGAA
AAAACAGGAGAAAATATCCTAAATATATATCCAAATCCGGTTTCAGATGTATTATCGTTTACAACAGATGTAACAGGAGG
AAAAATCAATATTATAGATTCTCAGGGAGCAGTTATCGGTTCTCAAAATGCTGCAGAAAATAGTTTGAACGTTTCGAATT
TAAAACAAGGAATTTATTTTATTGTTTTAGAAAAAGACGGGCAGAAAACAATTAAACGTTTTATTAAAAAATAA

Upstream 100 bases:

>100_bases
AAATTTTGCTCCCGATAGCTATCGGGATTGCGTAAACTTGGCGCTCTTTGCGGTTACTATTTATCTAATTGTATTGTAAC
CCTTTTTACCCCAAATAAAT

Downstream 100 bases:

>100_bases
TCTTAACCCATTTGCCATAATGGTTTAGATACATTAAATTTTTGGTTTTAATTTAATGGAAGGCTGTCAGAAATGACAGC
CTTTTTTATTTTTTAAAAGG

Product: carbohydrate-binding family 6 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 957; Mature: 957

Protein sequence:

>957_residues
MKNNYRLSLTFLVFLAFSGFVAAQTSLGSSKSFMNTLKKELTNSAASKSTDKTILLQAEKTSFNGKINFKESNASSEFLI
GEIKNIAESSFYIKVKDKSLEGHILLKKTKEAYKYFSDAQGNAFVEKVDINTLVCIDYKNLPTKENTTSKTAAAAEIAPA
LLDLQSLPGAAGCVMLDFDGYYMPAGNLWNNGNAINAAPSGMNDAAVQQHWEVVSEDYRPFNVNVTTNEAVFNSYPKNRR
MRVVVTPTNTAAPGAGGVAYIGSFNWDNDVPCWVFITSGKSGGDASSHEVGHTFDLGHDGRTSPAEDYFVGLDGTSWAPI
MGAGYYRPVVQWSKGEYNNANNKQDDVAIIASAKFGVGYRGDDYGNNIASAATLDYNSSGQINQKNGIISSEADYDFFSF
TTGGGNVSINANTVSRDGNLHLLIRLFNSAGTEMGTYWNSDPFALNASMNVNLPAGKYYIGVDGTGAGNAGSGGYSAYGS
IGSYSITGTIPPGGNISPSTDVITVYKDCNYTGFSGGLTIGDYNLARLNSLGVLNDDISSLRITQGYQAILYQDDNFGGA
STVINSDNSCLNTTWNDKVSSIRVIANGTTTLGNQTFFLQNRNSGLYMDVWNSSMSNGSGINQGGLNSGNNQKFTFTHLG
DGMYKIIANHSGQSMDVNNFNKANGARVEQYPYNGTTNQQFILVSTGDGFYKIVARHSGRIVEVAGASTASGAIVQQWDN
NNQTCGQWKLIATTTSQTSTLIQAEDYSAMSGIQVEPTTDTGGGSNVGYTETGDWMAYNNINFPTTGSYLIEYRVASGVI
GGRLSSDLNGGTIILGNVDIPNTGGWQNWQTVTQTVNVNAGTYNFGIYIQNTGMNINWIRITKIGNAAATAAVAAISAEE
KTGENILNIYPNPVSDVLSFTTDVTGGKINIIDSQGAVIGSQNAAENSLNVSNLKQGIYFIVLEKDGQKTIKRFIKK

Sequences:

>Translated_957_residues
MKNNYRLSLTFLVFLAFSGFVAAQTSLGSSKSFMNTLKKELTNSAASKSTDKTILLQAEKTSFNGKINFKESNASSEFLI
GEIKNIAESSFYIKVKDKSLEGHILLKKTKEAYKYFSDAQGNAFVEKVDINTLVCIDYKNLPTKENTTSKTAAAAEIAPA
LLDLQSLPGAAGCVMLDFDGYYMPAGNLWNNGNAINAAPSGMNDAAVQQHWEVVSEDYRPFNVNVTTNEAVFNSYPKNRR
MRVVVTPTNTAAPGAGGVAYIGSFNWDNDVPCWVFITSGKSGGDASSHEVGHTFDLGHDGRTSPAEDYFVGLDGTSWAPI
MGAGYYRPVVQWSKGEYNNANNKQDDVAIIASAKFGVGYRGDDYGNNIASAATLDYNSSGQINQKNGIISSEADYDFFSF
TTGGGNVSINANTVSRDGNLHLLIRLFNSAGTEMGTYWNSDPFALNASMNVNLPAGKYYIGVDGTGAGNAGSGGYSAYGS
IGSYSITGTIPPGGNISPSTDVITVYKDCNYTGFSGGLTIGDYNLARLNSLGVLNDDISSLRITQGYQAILYQDDNFGGA
STVINSDNSCLNTTWNDKVSSIRVIANGTTTLGNQTFFLQNRNSGLYMDVWNSSMSNGSGINQGGLNSGNNQKFTFTHLG
DGMYKIIANHSGQSMDVNNFNKANGARVEQYPYNGTTNQQFILVSTGDGFYKIVARHSGRIVEVAGASTASGAIVQQWDN
NNQTCGQWKLIATTTSQTSTLIQAEDYSAMSGIQVEPTTDTGGGSNVGYTETGDWMAYNNINFPTTGSYLIEYRVASGVI
GGRLSSDLNGGTIILGNVDIPNTGGWQNWQTVTQTVNVNAGTYNFGIYIQNTGMNINWIRITKIGNAAATAAVAAISAEE
KTGENILNIYPNPVSDVLSFTTDVTGGKINIIDSQGAVIGSQNAAENSLNVSNLKQGIYFIVLEKDGQKTIKRFIKK
>Mature_957_residues
MKNNYRLSLTFLVFLAFSGFVAAQTSLGSSKSFMNTLKKELTNSAASKSTDKTILLQAEKTSFNGKINFKESNASSEFLI
GEIKNIAESSFYIKVKDKSLEGHILLKKTKEAYKYFSDAQGNAFVEKVDINTLVCIDYKNLPTKENTTSKTAAAAEIAPA
LLDLQSLPGAAGCVMLDFDGYYMPAGNLWNNGNAINAAPSGMNDAAVQQHWEVVSEDYRPFNVNVTTNEAVFNSYPKNRR
MRVVVTPTNTAAPGAGGVAYIGSFNWDNDVPCWVFITSGKSGGDASSHEVGHTFDLGHDGRTSPAEDYFVGLDGTSWAPI
MGAGYYRPVVQWSKGEYNNANNKQDDVAIIASAKFGVGYRGDDYGNNIASAATLDYNSSGQINQKNGIISSEADYDFFSF
TTGGGNVSINANTVSRDGNLHLLIRLFNSAGTEMGTYWNSDPFALNASMNVNLPAGKYYIGVDGTGAGNAGSGGYSAYGS
IGSYSITGTIPPGGNISPSTDVITVYKDCNYTGFSGGLTIGDYNLARLNSLGVLNDDISSLRITQGYQAILYQDDNFGGA
STVINSDNSCLNTTWNDKVSSIRVIANGTTTLGNQTFFLQNRNSGLYMDVWNSSMSNGSGINQGGLNSGNNQKFTFTHLG
DGMYKIIANHSGQSMDVNNFNKANGARVEQYPYNGTTNQQFILVSTGDGFYKIVARHSGRIVEVAGASTASGAIVQQWDN
NNQTCGQWKLIATTTSQTSTLIQAEDYSAMSGIQVEPTTDTGGGSNVGYTETGDWMAYNNINFPTTGSYLIEYRVASGVI
GGRLSSDLNGGTIILGNVDIPNTGGWQNWQTVTQTVNVNAGTYNFGIYIQNTGMNINWIRITKIGNAAATAAVAAISAEE
KTGENILNIYPNPVSDVLSFTTDVTGGKINIIDSQGAVIGSQNAAENSLNVSNLKQGIYFIVLEKDGQKTIKRFIKK

Specific function: Unknown

COG id: COG5498

COG function: function code M; Predicted glycosyl hydrolase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ricin B-type lectin domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008985
- InterPro:   IPR013320
- InterPro:   IPR008997
- InterPro:   IPR000772 [H]

Pfam domain/function: PF00652 Ricin_B_lectin [H]

EC number: =3.2.1.81 [H]

Molecular weight: Translated: 102493; Mature: 102493

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS50231 RICIN_B_LECTIN ; PS00142 ZINC_PROTEASE ; PS50915 CRYSTALLIN_BETA_GAMMA L=RR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNNYRLSLTFLVFLAFSGFVAAQTSLGSSKSFMNTLKKELTNSAASKSTDKTILLQAEK
CCCCEEEEHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC
TSFNGKINFKESNASSEFLIGEIKNIAESSFYIKVKDKSLEGHILLKKTKEAYKYFSDAQ
CCCCCEEEEECCCCCCCEEHHHHHHHCCCEEEEEEECCCCCCEEEEEECHHHHHHHCCCC
GNAFVEKVDINTLVCIDYKNLPTKENTTSKTAAAAEIAPALLDLQSLPGAAGCVMLDFDG
CCEEEEEECCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC
YYMPAGNLWNNGNAINAAPSGMNDAAVQQHWEVVSEDYRPFNVNVTTNEAVFNSYPKNRR
EECCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHCCCCCCCE
MRVVVTPTNTAAPGAGGVAYIGSFNWDNDVPCWVFITSGKSGGDASSHEVGHTFDLGHDG
EEEEEECCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCEEECCCCC
RTSPAEDYFVGLDGTSWAPIMGAGYYRPVVQWSKGEYNNANNKQDDVAIIASAKFGVGYR
CCCCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEECCCCCCC
GDDYGNNIASAATLDYNSSGQINQKNGIISSEADYDFFSFTTGGGNVSINANTVSRDGNL
CCCCCCCCCEEEEEECCCCCCEECCCCEEECCCCCCEEEEEECCCEEEEEEEEEECCCCE
HLLIRLFNSAGTEMGTYWNSDPFALNASMNVNLPAGKYYIGVDGTGAGNAGSGGYSAYGS
EEEEEEECCCCCCCCCEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCEECCC
IGSYSITGTIPPGGNISPSTDVITVYKDCNYTGFSGGLTIGDYNLARLNSLGVLNDDISS
CCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCEEECCCCHHHCCCCCCCCCCHHH
LRITQGYQAILYQDDNFGGASTVINSDNSCLNTTWNDKVSSIRVIANGTTTLGNQTFFLQ
EEEECCEEEEEEECCCCCCCEEEEECCCCEEECCCCCCCCEEEEEECCCEECCCEEEEEE
NRNSGLYMDVWNSSMSNGSGINQGGLNSGNNQKFTFTHLGDGMYKIIANHSGQSMDVNNF
ECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCEECCCCC
NKANGARVEQYPYNGTTNQQFILVSTGDGFYKIVARHSGRIVEVAGASTASGAIVQQWDN
CCCCCCEEEECCCCCCCCCEEEEEECCCCEEEEEEECCCCEEEEECCCCCCCCEEEEECC
NNQTCGQWKLIATTTSQTSTLIQAEDYSAMSGIQVEPTTDTGGGSNVGYTETGDWMAYNN
CCCCCCEEEEEEEECCCCEEEEEECCCCHHCCCEEEECCCCCCCCCCCCCCCCCEEEECC
INFPTTGSYLIEYRVASGVIGGRLSSDLNGGTIILGNVDIPNTGGWQNWQTVTQTVNVNA
CCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEEECC
GTYNFGIYIQNTGMNINWIRITKIGNAAATAAVAAISAEEKTGENILNIYPNPVSDVLSF
CEEEEEEEEEECCCEEEEEEEEECCCCHHHHEEEEEECCCCCCCCEEEECCCCHHHHHHH
TTDVTGGKINIIDSQGAVIGSQNAAENSLNVSNLKQGIYFIVLEKDGQKTIKRFIKK
HCCCCCCEEEEEECCCCEEECCCCCCCCCCHHHHCCCEEEEEEECCCHHHHHHHHCC
>Mature Secondary Structure
MKNNYRLSLTFLVFLAFSGFVAAQTSLGSSKSFMNTLKKELTNSAASKSTDKTILLQAEK
CCCCEEEEHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC
TSFNGKINFKESNASSEFLIGEIKNIAESSFYIKVKDKSLEGHILLKKTKEAYKYFSDAQ
CCCCCEEEEECCCCCCCEEHHHHHHHCCCEEEEEEECCCCCCEEEEEECHHHHHHHCCCC
GNAFVEKVDINTLVCIDYKNLPTKENTTSKTAAAAEIAPALLDLQSLPGAAGCVMLDFDG
CCEEEEEECCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC
YYMPAGNLWNNGNAINAAPSGMNDAAVQQHWEVVSEDYRPFNVNVTTNEAVFNSYPKNRR
EECCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHCCCCCCCE
MRVVVTPTNTAAPGAGGVAYIGSFNWDNDVPCWVFITSGKSGGDASSHEVGHTFDLGHDG
EEEEEECCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCEEECCCCC
RTSPAEDYFVGLDGTSWAPIMGAGYYRPVVQWSKGEYNNANNKQDDVAIIASAKFGVGYR
CCCCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEECCCCCCC
GDDYGNNIASAATLDYNSSGQINQKNGIISSEADYDFFSFTTGGGNVSINANTVSRDGNL
CCCCCCCCCEEEEEECCCCCCEECCCCEEECCCCCCEEEEEECCCEEEEEEEEEECCCCE
HLLIRLFNSAGTEMGTYWNSDPFALNASMNVNLPAGKYYIGVDGTGAGNAGSGGYSAYGS
EEEEEEECCCCCCCCCEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCEECCC
IGSYSITGTIPPGGNISPSTDVITVYKDCNYTGFSGGLTIGDYNLARLNSLGVLNDDISS
CCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCEEECCCCHHHCCCCCCCCCCHHH
LRITQGYQAILYQDDNFGGASTVINSDNSCLNTTWNDKVSSIRVIANGTTTLGNQTFFLQ
EEEECCEEEEEEECCCCCCCEEEEECCCCEEECCCCCCCCEEEEEECCCEECCCEEEEEE
NRNSGLYMDVWNSSMSNGSGINQGGLNSGNNQKFTFTHLGDGMYKIIANHSGQSMDVNNF
ECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCEECCCCC
NKANGARVEQYPYNGTTNQQFILVSTGDGFYKIVARHSGRIVEVAGASTASGAIVQQWDN
CCCCCCEEEECCCCCCCCCEEEEEECCCCEEEEEEECCCCEEEEECCCCCCCCEEEEECC
NNQTCGQWKLIATTTSQTSTLIQAEDYSAMSGIQVEPTTDTGGGSNVGYTETGDWMAYNN
CCCCCCEEEEEEEECCCCEEEEEECCCCHHCCCEEEECCCCCCCCCCCCCCCCCEEEECC
INFPTTGSYLIEYRVASGVIGGRLSSDLNGGTIILGNVDIPNTGGWQNWQTVTQTVNVNA
CCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEEECC
GTYNFGIYIQNTGMNINWIRITKIGNAAATAAVAAISAEEKTGENILNIYPNPVSDVLSF
CEEEEEEEEEECCCEEEEEEEEECCCCHHHHEEEEEECCCCCCCCEEEECCCCHHHHHHH
TTDVTGGKINIIDSQGAVIGSQNAAENSLNVSNLKQGIYFIVLEKDGQKTIKRFIKK
HCCCCCCEEEEEECCCCEEECCCCCCCCCCHHHHCCCEEEEEEECCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA