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The map label for this gene is yybR [H]

Identifier: 146301894

GI number: 146301894

Start: 4988955

End: 4989275

Strand: Reverse

Name: yybR [H]

Synonym: Fjoh_4158

Alternate gene names: 146301894

Gene position: 4989275-4988955 (Counterclockwise)

Preceding gene: 146301896

Following gene: 146301893

Centisome position: 81.83

GC content: 36.14

Gene sequence:

>321_bases
ATGACTACAGAAAACAGCTCCCCAAAAAAGAACGAATGTCCGGCTCAGGGACTTCTAAAATTATTATCAGGTAAATGGAA
ACCACAGATTTTTCTTTTGGCTGAAGCCGGCCCATTACGTTTTAACGGACTTTTGAGAGACATTAAAGGCGCAAACAAAC
AATCTATTTCTACCGCACTGCGCGAGCTGGAAGAATTTGGACTTTTAGATAAAAACATTATCAAATTAAAACCGCTCCAC
ATCGAATATACATTATCTGAAAAAGGAAAATCGCTTATTCCGGTATTTAAACAGCTTGAATTTTTTTCTGAGAATAATTA
A

Upstream 100 bases:

>100_bases
GCGGTAGTATTTTCATAACAACTGTTTTATTTACACTTAGTTTTTTACTTTTACGCAAAGTTCGTCCGTATTTAATCACC
AGTCAATTAGTCTAAAAAAG

Downstream 100 bases:

>100_bases
GATTGTATTATCAATCATAAAGTAATTGCAATCTTACAAGGAATTATGTATTTTCACAGTTCGTAAAATATATAAGCCTG
CACCATGATTGAGATACATA

Product: HxlR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 106; Mature: 105

Protein sequence:

>106_residues
MTTENSSPKKNECPAQGLLKLLSGKWKPQIFLLAEAGPLRFNGLLRDIKGANKQSISTALRELEEFGLLDKNIIKLKPLH
IEYTLSEKGKSLIPVFKQLEFFSENN

Sequences:

>Translated_106_residues
MTTENSSPKKNECPAQGLLKLLSGKWKPQIFLLAEAGPLRFNGLLRDIKGANKQSISTALRELEEFGLLDKNIIKLKPLH
IEYTLSEKGKSLIPVFKQLEFFSENN
>Mature_105_residues
TTENSSPKKNECPAQGLLKLLSGKWKPQIFLLAEAGPLRFNGLLRDIKGANKQSISTALRELEEFGLLDKNIIKLKPLHI
EYTLSEKGKSLIPVFKQLEFFSENN

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 11956; Mature: 11825

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTENSSPKKNECPAQGLLKLLSGKWKPQIFLLAEAGPLRFNGLLRDIKGANKQSISTAL
CCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHH
RELEEFGLLDKNIIKLKPLHIEYTLSEKGKSLIPVFKQLEFFSENN
HHHHHCCCCCCCEEEECCEEEEEEECCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TTENSSPKKNECPAQGLLKLLSGKWKPQIFLLAEAGPLRFNGLLRDIKGANKQSISTAL
CCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHH
RELEEFGLLDKNIIKLKPLHIEYTLSEKGKSLIPVFKQLEFFSENN
HHHHHCCCCCCCEEEECCEEEEEEECCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]