| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is yghX [H]
Identifier: 146301873
GI number: 146301873
Start: 4972637
End: 4973533
Strand: Direct
Name: yghX [H]
Synonym: Fjoh_4137
Alternate gene names: 146301873
Gene position: 4972637-4973533 (Clockwise)
Preceding gene: 146301872
Following gene: 146301874
Centisome position: 81.56
GC content: 39.02
Gene sequence:
>897_bases ATGGATAACAAAATAACCAAAGAAGACATTAGTCAGGAAGTATTTGATTTGTATGATGACTATGCGCACAATAAAATTAA CCGAAGACAATTCGTTGAAAAACTCTCCATATTTGCCGTAGGATCGCTTACACTCCCTTCGCTTTTAAGTTTTATGACGC CAAATTATGCCGACACTATTTTGGTTCAGTCAACAGATCCAAGACTTAAAACAGGTTATATTAATTATGATTCTCCAAAA GGAGGCGGATCTATAAAAGGTCTTTTATCACAGCCTGCTGAAAGCAAAAAGAAACTTCCCGGAATAATTGTAGTCCATGA AAACCGCGGACTTAATCCGTATATTGAAGATGTAGGCCGAAGAGCTGCTCTCGAAGGTTTTATAACACTCGCTCCCGATG CTTTGTCTCCGCTGGGCGGTTATCCAGGCAATGATGATGAAGGACGAGAACTGCAAAAAAAGCGAACAAGAGAAGAAATG CTCGAAGATTTTATCGCCGCTTACGAATATCTTAAATCACACAAAGATTGTAACGGCTATGTGGGCGTTGTAGGTTTTTG CTTTGGAGGATGGATTTCGAATATGATGGCTGTAAAAATTCTGGATTTAAAAGCTGCAGTTCCGTATTACGGCGGACAGC CGGCTAAAGAGGAAGCTGAAAAAGTTAAAACACCGCTTCTTTTGCATTATGCAGGTTTAGATACACGCGTAAACGAAGGC TGGACTGCCTATCAGGAAGTTTTAAACAAAAATAAGGTAGAAAACACCGCTTACTTTTATCCAAACGTAAATCATGGTTT TCATAACAATACTACACCAAGATATGATGAAGCGGCCGCCACATTATCCTGGACCAGAACTATTGACTTTTTTAAAGCCA AATTAAAAAAGAAATAA
Upstream 100 bases:
>100_bases AACAACCAACAACTAACAACCAACAACTAACAACCAACAACCAACAACTAATCACAATTCACTTTTATTCCCTAAATTAG TTATTCCAAAAAATAACCTC
Downstream 100 bases:
>100_bases CCTCAATTCTATAAAAGCTTTTGTAAATTTGGTCTGTCTCATTAATTCAATTTCAACACAAAAAGACAGACCAGATGTTA CGACCTTGGCAATTTGAAAT
Product: carboxymethylenebutenolidase
Products: 4-oxohex-2-enedioate
Alternate protein names: NA
Number of amino acids: Translated: 298; Mature: 298
Protein sequence:
>298_residues MDNKITKEDISQEVFDLYDDYAHNKINRRQFVEKLSIFAVGSLTLPSLLSFMTPNYADTILVQSTDPRLKTGYINYDSPK GGGSIKGLLSQPAESKKKLPGIIVVHENRGLNPYIEDVGRRAALEGFITLAPDALSPLGGYPGNDDEGRELQKKRTREEM LEDFIAAYEYLKSHKDCNGYVGVVGFCFGGWISNMMAVKILDLKAAVPYYGGQPAKEEAEKVKTPLLLHYAGLDTRVNEG WTAYQEVLNKNKVENTAYFYPNVNHGFHNNTTPRYDEAAATLSWTRTIDFFKAKLKKK
Sequences:
>Translated_298_residues MDNKITKEDISQEVFDLYDDYAHNKINRRQFVEKLSIFAVGSLTLPSLLSFMTPNYADTILVQSTDPRLKTGYINYDSPK GGGSIKGLLSQPAESKKKLPGIIVVHENRGLNPYIEDVGRRAALEGFITLAPDALSPLGGYPGNDDEGRELQKKRTREEM LEDFIAAYEYLKSHKDCNGYVGVVGFCFGGWISNMMAVKILDLKAAVPYYGGQPAKEEAEKVKTPLLLHYAGLDTRVNEG WTAYQEVLNKNKVENTAYFYPNVNHGFHNNTTPRYDEAAATLSWTRTIDFFKAKLKKK >Mature_298_residues MDNKITKEDISQEVFDLYDDYAHNKINRRQFVEKLSIFAVGSLTLPSLLSFMTPNYADTILVQSTDPRLKTGYINYDSPK GGGSIKGLLSQPAESKKKLPGIIVVHENRGLNPYIEDVGRRAALEGFITLAPDALSPLGGYPGNDDEGRELQKKRTREEM LEDFIAAYEYLKSHKDCNGYVGVVGFCFGGWISNMMAVKILDLKAAVPYYGGQPAKEEAEKVKTPLLLHYAGLDTRVNEG WTAYQEVLNKNKVENTAYFYPNVNHGFHNNTTPRYDEAAATLSWTRTIDFFKAKLKKK
Specific function: Unknown
COG id: COG0412
COG function: function code Q; Dienelactone hydrolase and related enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI48994982, Length=256, Percent_Identity=27.734375, Blast_Score=92, Evalue=6e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002925 [H]
Pfam domain/function: PF01738 DLH [H]
EC number: 3.1.1.45
Molecular weight: Translated: 33492; Mature: 33492
Theoretical pI: Translated: 7.64; Mature: 7.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDNKITKEDISQEVFDLYDDYAHNKINRRQFVEKLSIFAVGSLTLPSLLSFMTPNYADTI CCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEE LVQSTDPRLKTGYINYDSPKGGGSIKGLLSQPAESKKKLPGIIVVHENRGLNPYIEDVGR EEECCCCCEEECEEECCCCCCCCCHHHHHCCCHHHHHCCCCEEEEECCCCCCHHHHHHHH RAALEGFITLAPDALSPLGGYPGNDDEGRELQKKRTREEMLEDFIAAYEYLKSHKDCNGY HHHHHHHEEECCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH VGVVGFCFGGWISNMMAVKILDLKAAVPYYGGQPAKEEAEKVKTPLLLHYAGLDTRVNEG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCEEEEECCCCCCCCCC WTAYQEVLNKNKVENTAYFYPNVNHGFHNNTTPRYDEAAATLSWTRTIDFFKAKLKKK HHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MDNKITKEDISQEVFDLYDDYAHNKINRRQFVEKLSIFAVGSLTLPSLLSFMTPNYADTI CCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEE LVQSTDPRLKTGYINYDSPKGGGSIKGLLSQPAESKKKLPGIIVVHENRGLNPYIEDVGR EEECCCCCEEECEEECCCCCCCCCHHHHHCCCHHHHHCCCCEEEEECCCCCCHHHHHHHH RAALEGFITLAPDALSPLGGYPGNDDEGRELQKKRTREEMLEDFIAAYEYLKSHKDCNGY HHHHHHHEEECCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH VGVVGFCFGGWISNMMAVKILDLKAAVPYYGGQPAKEEAEKVKTPLLLHYAGLDTRVNEG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCEEEEECCCCCCCCCC WTAYQEVLNKNKVENTAYFYPNVNHGFHNNTTPRYDEAAATLSWTRTIDFFKAKLKKK HHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: 4-carboxymethylenebut-2-en-4-olide; H2O
Specific reaction: 4-carboxymethylenebut-2-en-4-olide + H2O = 4-oxohex-2-enedioate
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]