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The map label for this gene is ypdA [H]

Identifier: 146301869

GI number: 146301869

Start: 4969172

End: 4970215

Strand: Direct

Name: ypdA [H]

Synonym: Fjoh_4133

Alternate gene names: 146301869

Gene position: 4969172-4970215 (Clockwise)

Preceding gene: 146301864

Following gene: 146301870

Centisome position: 81.5

GC content: 33.52

Gene sequence:

>1044_bases
ATGGCATCAAACGTTTACAGACCTTATTTTTTTACCGGACTGCATATTCTAAGCTGGTTATTACTGGGATTTATCATGTT
GTTTTACATGCCTTTAACCTGGAATGTAATTCTTCCTGGTATTTTCTGGCTTTGGCAGATTATTATATTGATTTTGTTAA
TCATTATTTTTTACACTAATGCTAAAATCATAGTTCCCAAAACCATTATAAAAGACAATACTTCTCCGTTTTTAATCTGG
GCATTTATCATTGTTTTTGTAATGCAGCTTATCGCTTATTTTTATACCTCGCAGACTGATCTTCATAATAAAATAAGCTT
GGTTTTAGGATTCAAAAAATATAGAAATCCCTATTTCGACAATTATGTTTTAATGCTCACTTTATTGGTTTTAGGAATCA
GCACGAGCTGGGCAATGTTACAATACTGGCAGAAAGCCGCACAGCACAAACAAAAACTGGAGCAGGACAAAACAGTTGCC
GAACTGGCTATGCTGAAAGCACAAATTAATCCGCACTTTTTCTTTAATTCCTTAAATAGTATTTATTCCCTTACTTATAC
AGATATTGAAGATTCCAGAAATGCGCTTCATACTTTAAGCCGAATGATGCGTTATTTATTGTACAGTACCGAAGAAAGAA
CAACATTATTAAAAGAAGCCGAGTTTATGAGAGATTTTATCGCCCTTATGAAACTTCGTGCCAATAAAAAGCTGACGATT
ACAACCGACATTCCAGAAAAAATACACGATTACCCAATTGTTCCAATGTTATTATTACCTTTAGTAGAAAATGCTTTTAA
ACACGGCATTCATGCTACCGATAAAAGTGAAATTCATATTAAACTGAGACAAAACGGAAGCAATCTGGAATTTGAAGTAG
AAAATACCTATTTCGAAAAAACGTCTACTACAGATGAAGGCGGCATTGGGTTAACAAATACAAAACGCAGACTGCATTTA
ATTTATCCGCATAAACATACTCTGATAGCAGGTATCGCTAAAAACGGTATGTATAATGTACAGCTGCAAATAAATTTAGA
ATAA

Upstream 100 bases:

>100_bases
TCTAAAATGGTTTTTACAGACTGTAATTCTCTATTTGCCGATTGCTTCAAAATTGCATTTAAATAAAATGTAATATTGTC
AATAAAACACTAAACTTGTA

Downstream 100 bases:

>100_bases
TGACAACATTAAAATGTATAGCAGTAGATGATGAACCTCTGGCATTAAAACTGGTCGAAACTTTTATTGACCAGACTCCT
TTTTTGCAATTGAGCGCCAG

Product: signal transduction histidine kinase LytS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 347; Mature: 346

Protein sequence:

>347_residues
MASNVYRPYFFTGLHILSWLLLGFIMLFYMPLTWNVILPGIFWLWQIIILILLIIIFYTNAKIIVPKTIIKDNTSPFLIW
AFIIVFVMQLIAYFYTSQTDLHNKISLVLGFKKYRNPYFDNYVLMLTLLVLGISTSWAMLQYWQKAAQHKQKLEQDKTVA
ELAMLKAQINPHFFFNSLNSIYSLTYTDIEDSRNALHTLSRMMRYLLYSTEERTTLLKEAEFMRDFIALMKLRANKKLTI
TTDIPEKIHDYPIVPMLLLPLVENAFKHGIHATDKSEIHIKLRQNGSNLEFEVENTYFEKTSTTDEGGIGLTNTKRRLHL
IYPHKHTLIAGIAKNGMYNVQLQINLE

Sequences:

>Translated_347_residues
MASNVYRPYFFTGLHILSWLLLGFIMLFYMPLTWNVILPGIFWLWQIIILILLIIIFYTNAKIIVPKTIIKDNTSPFLIW
AFIIVFVMQLIAYFYTSQTDLHNKISLVLGFKKYRNPYFDNYVLMLTLLVLGISTSWAMLQYWQKAAQHKQKLEQDKTVA
ELAMLKAQINPHFFFNSLNSIYSLTYTDIEDSRNALHTLSRMMRYLLYSTEERTTLLKEAEFMRDFIALMKLRANKKLTI
TTDIPEKIHDYPIVPMLLLPLVENAFKHGIHATDKSEIHIKLRQNGSNLEFEVENTYFEKTSTTDEGGIGLTNTKRRLHL
IYPHKHTLIAGIAKNGMYNVQLQINLE
>Mature_346_residues
ASNVYRPYFFTGLHILSWLLLGFIMLFYMPLTWNVILPGIFWLWQIIILILLIIIFYTNAKIIVPKTIIKDNTSPFLIWA
FIIVFVMQLIAYFYTSQTDLHNKISLVLGFKKYRNPYFDNYVLMLTLLVLGISTSWAMLQYWQKAAQHKQKLEQDKTVAE
LAMLKAQINPHFFFNSLNSIYSLTYTDIEDSRNALHTLSRMMRYLLYSTEERTTLLKEAEFMRDFIALMKLRANKKLTIT
TDIPEKIHDYPIVPMLLLPLVENAFKHGIHATDKSEIHIKLRQNGSNLEFEVENTYFEKTSTTDEGGIGLTNTKRRLHLI
YPHKHTLIAGIAKNGMYNVQLQINLE

Specific function: Unknown

COG id: COG2972

COG function: function code T; Predicted signal transduction protein with a C-terminal ATPase domain

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788723, Length=190, Percent_Identity=32.1052631578947, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1788446, Length=163, Percent_Identity=31.2883435582822, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR010559
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF02518 HATPase_c; PF06580 His_kinase [H]

EC number: NA

Molecular weight: Translated: 40645; Mature: 40513

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASNVYRPYFFTGLHILSWLLLGFIMLFYMPLTWNVILPGIFWLWQIIILILLIIIFYTN
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
AKIIVPKTIIKDNTSPFLIWAFIIVFVMQLIAYFYTSQTDLHNKISLVLGFKKYRNPYFD
CEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHEEEHHHHCCCCCC
NYVLMLTLLVLGISTSWAMLQYWQKAAQHKQKLEQDKTVAELAMLKAQINPHFFFNSLNS
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
IYSLTYTDIEDSRNALHTLSRMMRYLLYSTEERTTLLKEAEFMRDFIALMKLRANKKLTI
HHEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
TTDIPEKIHDYPIVPMLLLPLVENAFKHGIHATDKSEIHIKLRQNGSNLEFEVENTYFEK
EECCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEECCCEEEC
TSTTDEGGIGLTNTKRRLHLIYPHKHTLIAGIAKNGMYNVQLQINLE
CCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHCCCEEEEEEEEEEC
>Mature Secondary Structure 
ASNVYRPYFFTGLHILSWLLLGFIMLFYMPLTWNVILPGIFWLWQIIILILLIIIFYTN
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
AKIIVPKTIIKDNTSPFLIWAFIIVFVMQLIAYFYTSQTDLHNKISLVLGFKKYRNPYFD
CEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHEEEHHHHCCCCCC
NYVLMLTLLVLGISTSWAMLQYWQKAAQHKQKLEQDKTVAELAMLKAQINPHFFFNSLNS
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
IYSLTYTDIEDSRNALHTLSRMMRYLLYSTEERTTLLKEAEFMRDFIALMKLRANKKLTI
HHEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
TTDIPEKIHDYPIVPMLLLPLVENAFKHGIHATDKSEIHIKLRQNGSNLEFEVENTYFEK
EECCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEECCCEEEC
TSTTDEGGIGLTNTKRRLHLIYPHKHTLIAGIAKNGMYNVQLQINLE
CCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHCCCEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]