| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146301819
Identifier: 146301819
GI number: 146301819
Start: 4883848
End: 4886298
Strand: Reverse
Name: 146301819
Synonym: Fjoh_4083
Alternate gene names: NA
Gene position: 4886298-4883848 (Counterclockwise)
Preceding gene: 146301820
Following gene: 146301818
Centisome position: 80.14
GC content: 38.56
Gene sequence:
>2451_bases ATGGGATTGAAAATTAAAATAACTGCGATTTGTTTTGGAATTTTTTCCTTGACAGCAACAGCACAAAGTGACCTAAAATT ATGGTACGATAAACCCGCATCCATCTGGAACGAAGCTCTACCTTTAGGTAACGGACGTTTGGGCGCAATGGTTTTTGGAG ATCCAGCGGTAGAACGTTTGCAATTGAACGAAGAAACGATTTGGGCAGGTTCTCCAAACGGCAATGCACATAATAAATCT ATTAAAGCACTTCCAATTGTTCGTCAGTTAATTTTTGACGGAAAATTTGATGAAGCGCAGGATTTGGCAACGCAGGATAT TATGTCGCAAACCAATGACGGTATGCCGTATCAGACTTTCGGAAGCGTTTATATTTCATTCGCAGGACATCAAAAATATG CGGATTATTATCGTGATTTAGATATCAGCAATGCTACGGCAAAAGTAAAATACAAAGTAAATGGCGTTGAATTTACAAGA GAAATTCTAACTGCATTTTCAGATCAGGTTATTGTGGTGAAACTTTCTGCTAGTCAGCCGGGACAGATTACTTGTAATGT TTTCATGAACAGTCCAATTGATAAAACGGTGGCTTCGACAGAAGGAAACCAGATTATACTTTCAGGAGTTGGAACTAATT TTGAAGGCGTAAAAGGAAAAGTAAAATTTCAAGGCCGATTAACGGCTAAAAACAAAGGCGGTGAAATCGATGCCAGCAAC GGTGTTTTAAGTATCAACAAAGCCGATGAAGTGACTTTGTACATTTCGATTGCAACCAATTTCAAAAATTATCAGGATAT TTCAGGAGATGAAATTGCAAAAAGCAAAGATTATTTGGCTAAAGCCGAAGTAAAAGATTTTGAAACGATTAAGAAAGCCC ACGTTGATTATTACCAGAAATTCTTCAACAGAGTTTCTTTAAATTTAGGTTCAAATGATTTGGTTAAGAAACCCACAAAC GAAAGAATCCGAGATTTCTCTAAACAATTTGATCCGCAATTGGCGAGTTTGTATTTCCAGTTTGGACGTTATCTTTTAAT TTCAAGTTCGCAACCAGGTGGTCAGCCAGCCAATTTGCAAGGAATCTGGAACGATATGGTCACACCGCCTTGGGATAGTA AATACACAACAAACATCAATGCCGAAATGAATTATTGGCCGGCACAAGTAACCAATTTGCAGGAAATGCATGAGCCTTTT GTGCAAATGGCAAAAGAGTTAGCGGTAACTGGTGCAGAAACTGCCAAAACAATGTACAATGCCAGCGGTTGGGTTTTACA TCACAACACTGATATTTGGCGTGTTACAGCTCCGGTAGATTCAGCTGCGTCGGGAATGTGGCCGACAGGTGGCGCTTGGG TTTGTCAGGATTTATGGGAAAGATATTTATATACAGGAGACAAAAAGTATTTAGTAGAAATTTATCCAATCATGAAAGGT GCGGCCGATTTCTTTTTGGATTTTATGGTTATTGATCCTAATACAAAATATTTAGTTGTTGTTCCTTCGAGTTCTCCTGA AAACACACACGCAGGCGGAACAGGAAAAGCAACAATTGCATCAGGAACAACAATGGATAATCAGCTGGTTTTTGATTTGT TTACACATGTTATCGAAGCTTCGGCTTTGGTTTCGCCAGATGTGGCTTATGCCAAAAAAGTGAGCGATGCTTTAGCTAAA ATGCCTCCAATGAAAATTGGGAAATACAATCAGTTGCAGGAATGGCAGGACGATTGGGATAACCCAAAAGACAATCACAG ACACGTTTCGCATTTGTACGGATTGTATCCAAGTAATCAGATTTCAGCAATTAAAACACCTGAATTATTTGAAGCTGCTA AACAATCCTTGATTTACAGAACAGACGAATCTACTGGCTGGTCAATGGGGTGGAAAGTGAATTTGTGGGCGAGATTATTA GACGGAAATCACGCTTATAAATTGATTCAGGATCAATTGCATTTGGTAACAGCGGATCAGAGAAAAGGTGGCGGAACGTA TCCGAATATGTTAGACGCGCATCAGCCTTTTCAAATCGATGGAAATTTTGGATGTACAGCCGGTTTTGCTGAAATGCTGA TGCAGAGTCAGGAAGAGGCGATTCATTTATTGCCAGCTTTGCCAACTGTATGGAAAGACGGAAGTATTAAAGGTTTGGTG GCCAGAGGCGGATTTGTAATTGATATGACTTGGAAAAACAATAAAGTTTCGGAGTTAAAAATCTATTCGAAAATTGGAGG AAACTGTAGATTAAAAGTAGAAAATACTTTAAAAGGTTCTTCGCTTAAAAAAGCAAAAGGAAAGAATCCGAATCCCTTGT TTTACGATGTAGAAGTAAAGAAACCAATTATTTCTAAAGAAGCAAAATTGCCTAAAGTACAATTGCCAACTTACAATATT TACGATGTGAATATGAAAGCAGGGCAGACTTATACTTTTTCGGGGAATTAA
Upstream 100 bases:
>100_bases CCTTTTAATCTGTGGCAAAATAAATTAGAGAAATTGAAATAAAAATTAAAAAGGAATTAGTGCCAATTCGTGAAATTCGT GGCGAGAAAAAAATATAAGT
Downstream 100 bases:
>100_bases TTTTTTGAACCATATAAGTTATATAAGAAAATATAATAACACGTCATATTTGTCATTTCGACGAAGGAGAAATCTCCACA AGTAACTCCGCAAAATGAGT
Product: hypothetical protein
Products: NA
Alternate protein names: Glycoside Hydrolase Family; Large Secreted Protein; Fibronectin Type III Domain Protein; Twin-Arginine Translocation Pathway Signal; Glycoside Hydrolase Family Protein; Six-Hairpin Glycosidase; 1 2-Alpha-L-Fucosidase; Alpha/Beta Hydrolase Domain-Containing Protein; Alpha-Fucosidase; Trehalose And Maltose Hydrolase-Like Protein; Fibronectin Type III Domain-Containing Protein; 1 2-A-L-Fucosidase; Ricin B Lectin; Coagulation Factor 5/8 Type Domain-Containing Protein; Glycosyl Hydrolase; F5/8 Type C Domain-Containing Protein; Candidate Alpha-L-Fucosidase; Glycosyl Hydrolase Family Protein
Number of amino acids: Translated: 816; Mature: 815
Protein sequence:
>816_residues MGLKIKITAICFGIFSLTATAQSDLKLWYDKPASIWNEALPLGNGRLGAMVFGDPAVERLQLNEETIWAGSPNGNAHNKS IKALPIVRQLIFDGKFDEAQDLATQDIMSQTNDGMPYQTFGSVYISFAGHQKYADYYRDLDISNATAKVKYKVNGVEFTR EILTAFSDQVIVVKLSASQPGQITCNVFMNSPIDKTVASTEGNQIILSGVGTNFEGVKGKVKFQGRLTAKNKGGEIDASN GVLSINKADEVTLYISIATNFKNYQDISGDEIAKSKDYLAKAEVKDFETIKKAHVDYYQKFFNRVSLNLGSNDLVKKPTN ERIRDFSKQFDPQLASLYFQFGRYLLISSSQPGGQPANLQGIWNDMVTPPWDSKYTTNINAEMNYWPAQVTNLQEMHEPF VQMAKELAVTGAETAKTMYNASGWVLHHNTDIWRVTAPVDSAASGMWPTGGAWVCQDLWERYLYTGDKKYLVEIYPIMKG AADFFLDFMVIDPNTKYLVVVPSSSPENTHAGGTGKATIASGTTMDNQLVFDLFTHVIEASALVSPDVAYAKKVSDALAK MPPMKIGKYNQLQEWQDDWDNPKDNHRHVSHLYGLYPSNQISAIKTPELFEAAKQSLIYRTDESTGWSMGWKVNLWARLL DGNHAYKLIQDQLHLVTADQRKGGGTYPNMLDAHQPFQIDGNFGCTAGFAEMLMQSQEEAIHLLPALPTVWKDGSIKGLV ARGGFVIDMTWKNNKVSELKIYSKIGGNCRLKVENTLKGSSLKKAKGKNPNPLFYDVEVKKPIISKEAKLPKVQLPTYNI YDVNMKAGQTYTFSGN
Sequences:
>Translated_816_residues MGLKIKITAICFGIFSLTATAQSDLKLWYDKPASIWNEALPLGNGRLGAMVFGDPAVERLQLNEETIWAGSPNGNAHNKS IKALPIVRQLIFDGKFDEAQDLATQDIMSQTNDGMPYQTFGSVYISFAGHQKYADYYRDLDISNATAKVKYKVNGVEFTR EILTAFSDQVIVVKLSASQPGQITCNVFMNSPIDKTVASTEGNQIILSGVGTNFEGVKGKVKFQGRLTAKNKGGEIDASN GVLSINKADEVTLYISIATNFKNYQDISGDEIAKSKDYLAKAEVKDFETIKKAHVDYYQKFFNRVSLNLGSNDLVKKPTN ERIRDFSKQFDPQLASLYFQFGRYLLISSSQPGGQPANLQGIWNDMVTPPWDSKYTTNINAEMNYWPAQVTNLQEMHEPF VQMAKELAVTGAETAKTMYNASGWVLHHNTDIWRVTAPVDSAASGMWPTGGAWVCQDLWERYLYTGDKKYLVEIYPIMKG AADFFLDFMVIDPNTKYLVVVPSSSPENTHAGGTGKATIASGTTMDNQLVFDLFTHVIEASALVSPDVAYAKKVSDALAK MPPMKIGKYNQLQEWQDDWDNPKDNHRHVSHLYGLYPSNQISAIKTPELFEAAKQSLIYRTDESTGWSMGWKVNLWARLL DGNHAYKLIQDQLHLVTADQRKGGGTYPNMLDAHQPFQIDGNFGCTAGFAEMLMQSQEEAIHLLPALPTVWKDGSIKGLV ARGGFVIDMTWKNNKVSELKIYSKIGGNCRLKVENTLKGSSLKKAKGKNPNPLFYDVEVKKPIISKEAKLPKVQLPTYNI YDVNMKAGQTYTFSGN >Mature_815_residues GLKIKITAICFGIFSLTATAQSDLKLWYDKPASIWNEALPLGNGRLGAMVFGDPAVERLQLNEETIWAGSPNGNAHNKSI KALPIVRQLIFDGKFDEAQDLATQDIMSQTNDGMPYQTFGSVYISFAGHQKYADYYRDLDISNATAKVKYKVNGVEFTRE ILTAFSDQVIVVKLSASQPGQITCNVFMNSPIDKTVASTEGNQIILSGVGTNFEGVKGKVKFQGRLTAKNKGGEIDASNG VLSINKADEVTLYISIATNFKNYQDISGDEIAKSKDYLAKAEVKDFETIKKAHVDYYQKFFNRVSLNLGSNDLVKKPTNE RIRDFSKQFDPQLASLYFQFGRYLLISSSQPGGQPANLQGIWNDMVTPPWDSKYTTNINAEMNYWPAQVTNLQEMHEPFV QMAKELAVTGAETAKTMYNASGWVLHHNTDIWRVTAPVDSAASGMWPTGGAWVCQDLWERYLYTGDKKYLVEIYPIMKGA ADFFLDFMVIDPNTKYLVVVPSSSPENTHAGGTGKATIASGTTMDNQLVFDLFTHVIEASALVSPDVAYAKKVSDALAKM PPMKIGKYNQLQEWQDDWDNPKDNHRHVSHLYGLYPSNQISAIKTPELFEAAKQSLIYRTDESTGWSMGWKVNLWARLLD GNHAYKLIQDQLHLVTADQRKGGGTYPNMLDAHQPFQIDGNFGCTAGFAEMLMQSQEEAIHLLPALPTVWKDGSIKGLVA RGGFVIDMTWKNNKVSELKIYSKIGGNCRLKVENTLKGSSLKKAKGKNPNPLFYDVEVKKPIISKEAKLPKVQLPTYNIY DVNMKAGQTYTFSGN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 90827; Mature: 90696
Theoretical pI: Translated: 7.68; Mature: 7.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLKIKITAICFGIFSLTATAQSDLKLWYDKPASIWNEALPLGNGRLGAMVFGDPAVERL CCEEEEEHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHCCCCCCCCEEEEEECCCHHHHE QLNEETIWAGSPNGNAHNKSIKALPIVRQLIFDGKFDEAQDLATQDIMSQTNDGMPYQTF ECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEE GSVYISFAGHQKYADYYRDLDISNATAKVKYKVNGVEFTREILTAFSDQVIVVKLSASQP CEEEEEECCCHHHHHHHHCCCCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEEEECCCCC GQITCNVFMNSPIDKTVASTEGNQIILSGVGTNFEGVKGKVKFQGRLTAKNKGGEIDASN CEEEEEEEECCCCCHHHHCCCCCEEEEEECCCCCCCCEEEEEEEEEEEECCCCCEEECCC GVLSINKADEVTLYISIATNFKNYQDISGDEIAKSKDYLAKAEVKDFETIKKAHVDYYQK CEEEECCCCCEEEEEEEEECCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH FFNRVSLNLGSNDLVKKPTNERIRDFSKQFDPQLASLYFQFGRYLLISSSQPGGQPANLQ HHHHEEECCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCEEEEECCCCCCCCCCCC GIWNDMVTPPWDSKYTTNINAEMNYWPAQVTNLQEMHEPFVQMAKELAVTGAETAKTMYN HHHHCCCCCCCCCCEEEEECCEEEECCHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHCC ASGWVLHHNTDIWRVTAPVDSAASGMWPTGGAWVCQDLWERYLYTGDKKYLVEIYPIMKG CCCEEEEECCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEHHHHC AADFFLDFMVIDPNTKYLVVVPSSSPENTHAGGTGKATIASGTTMDNQLVFDLFTHVIEA CHHEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHH SALVSPDVAYAKKVSDALAKMPPMKIGKYNQLQEWQDDWDNPKDNHRHVSHLYGLYPSNQ HHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCC ISAIKTPELFEAAKQSLIYRTDESTGWSMGWKVNLWARLLDGNHAYKLIQDQLHLVTADQ CCCCCCHHHHHHHHHHEEEEECCCCCCCCCEEEEEEEEEECCCHHHHHHHCCEEEEEECC RKGGGTYPNMLDAHQPFQIDGNFGCTAGFAEMLMQSQEEAIHLLPALPTVWKDGSIKGLV CCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCEEEEE ARGGFVIDMTWKNNKVSELKIYSKIGGNCRLKVENTLKGSSLKKAKGKNPNPLFYDVEVK ECCCEEEEEEECCCCCCEEEEEECCCCEEEEEECCCCCCCCCHHHCCCCCCCEEEEEEEC KPIISKEAKLPKVQLPTYNIYDVNMKAGQTYTFSGN CCHHCCCCCCCEEECCEEEEEEEEECCCCEEEECCC >Mature Secondary Structure GLKIKITAICFGIFSLTATAQSDLKLWYDKPASIWNEALPLGNGRLGAMVFGDPAVERL CEEEEEHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHCCCCCCCCEEEEEECCCHHHHE QLNEETIWAGSPNGNAHNKSIKALPIVRQLIFDGKFDEAQDLATQDIMSQTNDGMPYQTF ECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEE GSVYISFAGHQKYADYYRDLDISNATAKVKYKVNGVEFTREILTAFSDQVIVVKLSASQP CEEEEEECCCHHHHHHHHCCCCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEEEECCCCC GQITCNVFMNSPIDKTVASTEGNQIILSGVGTNFEGVKGKVKFQGRLTAKNKGGEIDASN CEEEEEEEECCCCCHHHHCCCCCEEEEEECCCCCCCCEEEEEEEEEEEECCCCCEEECCC GVLSINKADEVTLYISIATNFKNYQDISGDEIAKSKDYLAKAEVKDFETIKKAHVDYYQK CEEEECCCCCEEEEEEEEECCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH FFNRVSLNLGSNDLVKKPTNERIRDFSKQFDPQLASLYFQFGRYLLISSSQPGGQPANLQ HHHHEEECCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCEEEEECCCCCCCCCCCC GIWNDMVTPPWDSKYTTNINAEMNYWPAQVTNLQEMHEPFVQMAKELAVTGAETAKTMYN HHHHCCCCCCCCCCEEEEECCEEEECCHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHCC ASGWVLHHNTDIWRVTAPVDSAASGMWPTGGAWVCQDLWERYLYTGDKKYLVEIYPIMKG CCCEEEEECCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEHHHHC AADFFLDFMVIDPNTKYLVVVPSSSPENTHAGGTGKATIASGTTMDNQLVFDLFTHVIEA CHHEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHH SALVSPDVAYAKKVSDALAKMPPMKIGKYNQLQEWQDDWDNPKDNHRHVSHLYGLYPSNQ HHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCC ISAIKTPELFEAAKQSLIYRTDESTGWSMGWKVNLWARLLDGNHAYKLIQDQLHLVTADQ CCCCCCHHHHHHHHHHEEEEECCCCCCCCCEEEEEEEEEECCCHHHHHHHCCEEEEEECC RKGGGTYPNMLDAHQPFQIDGNFGCTAGFAEMLMQSQEEAIHLLPALPTVWKDGSIKGLV CCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCEEEEE ARGGFVIDMTWKNNKVSELKIYSKIGGNCRLKVENTLKGSSLKKAKGKNPNPLFYDVEVK ECCCEEEEEEECCCCCCEEEEEECCCCEEEEEECCCCCCCCCHHHCCCCCCCEEEEEEEC KPIISKEAKLPKVQLPTYNIYDVNMKAGQTYTFSGN CCHHCCCCCCCEEECCEEEEEEEEECCCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA