| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146301818
Identifier: 146301818
GI number: 146301818
Start: 4882093
End: 4883661
Strand: Reverse
Name: 146301818
Synonym: Fjoh_4082
Alternate gene names: NA
Gene position: 4883661-4882093 (Counterclockwise)
Preceding gene: 146301819
Following gene: 146301817
Centisome position: 80.1
GC content: 35.5
Gene sequence:
>1569_bases ATGTTACAACATTTTAAACATAAAATAATTACGCTTTCAGTTGTCGTTGCTTGTATAAACAGTGGTTGCAAATCGACTGT GGAACATTCACAAAAAGGAAAATGGGTTATTTTAAAAGAAAAAAACTTCAAACATTATGTGGATTATTTCAACACAATGG AAGATGAAAATTTGAAGTTTGCAATTCCGAATGACAGCGCTTGGGCTTGGATGGAAAAGAATATTCCGTTGTTTGAATGT CCACAGCAGAATTTTGAGGAAATCTATTATTTCAGATGGTGGAGCGTTCGTAAACATATCAAAAATACACCACAGGGATT TGCGATCACAGAGTTTTTAGTCGATCGTTCGTATGCCGATAAATACAATATGATTAGTTGTGCTTTGGGGCATCATATCA ACGAATTCAGATGGGTTCATGATCCGAAATATATCGAGCAGGATGTGAAACTTTGGTACCGAGGAAATGATGGAAAACCA ATGAACAAATTGTATAAATTCAGCAGTTGGACAGCCGATGCTTTATATAATCGTTATTTGGTGAATAAAGATGAAAAATT CTTATTGGATTTATATCCAGACATGGTTACAGATTATGCCGTTTGGGAAAAAGACCGTCAGCGTAAAGATGGTTTGTTTT GGCAACATGATGTGAAAGATGGAATGGAAGAATCCTTAAGTGGTGGGCGTAAAGTACAAAATGCAAGACCAACGATAAAC AGTTATATGTACGGGAATGCTATGGCAATTTCTAAAATGGCTGAATTGAAAGGTGATAAGGAAGCAGAAAACAAATTCAA AGCGAAAGCTGATGTTCTGCAAAAATTAGTAGAAACCAAATTATGGAATCAGAAAAGCGAATTTTTTGAAACTTTAACAG AAAAAGATACTTTAGCACAAGTTCGAGAAGCAATAGGATTTATTCCTTGGTATTTTAATCTTCCTGAAAAAGGTAAAGGT TTTGAAAAAGCCTGGGAACAGATTAAGGATGAAAAAGGATTTTCGGCTCCGTTTGGTTTGACAACGGCTGAAAGAAGAAG TCCAAGATTTAGAACACACGGAACAGGAACCTGCGAATGGGACGGCGCGATTTGGCCATTTGCAAGTTCGCAGACGTTAA CGGCTTTAGGTAATGTTTTGAATAATTACAATCAGAACTTTGTAGCCAAACCCGATTATTTCAAACAGATGGAATTGTAT GTTCAATCACAATATTATAGAGGAAAACCTTATCTTGGCGAGTATTTGGATGAAACAACGGGTTATTGGTTAATGGGAGA CAAAGAAAGAAGCCGTTATTATAATCATTCGACTTTTAATGATTTGGTGATTACAGGATTGATTGGTTTACGTCCGAGAG CAGATGAAAAGATAGAAGTAAATCCGTTGATTCCACAAGAAAAATGGGATTGGTTTTGTCTTGACAATGTTCTGTATCAC GGCAATATTATTACCATTCTTTGGGATAAAACAGGAGAAAAATATAAAAAAGGAAAAGGTTTTAGAATCTTTAAAAACGG AAAGGAAATTGCAGTTTCTGAGAAATTGGAGCGTGTGATTTCAAATTAG
Upstream 100 bases:
>100_bases TCCGCAAAATGAGTCGCCAATCTTTGTCAAATTTCTAACGAAGATTTCTCCTTCGTCGAAATGGCAAGATTGAGTAAAAA GAATAAAATAAAAACAGAAT
Downstream 100 bases:
>100_bases TTATAAACCCAACAGGTTTTTAAAACCTGTCGGGTTTGATACGCTAATAAGTTGATTTAGTTAAGAATAAAATTTGGAGA AAACAGTATTAAGTTATTCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 522; Mature: 522
Protein sequence:
>522_residues MLQHFKHKIITLSVVVACINSGCKSTVEHSQKGKWVILKEKNFKHYVDYFNTMEDENLKFAIPNDSAWAWMEKNIPLFEC PQQNFEEIYYFRWWSVRKHIKNTPQGFAITEFLVDRSYADKYNMISCALGHHINEFRWVHDPKYIEQDVKLWYRGNDGKP MNKLYKFSSWTADALYNRYLVNKDEKFLLDLYPDMVTDYAVWEKDRQRKDGLFWQHDVKDGMEESLSGGRKVQNARPTIN SYMYGNAMAISKMAELKGDKEAENKFKAKADVLQKLVETKLWNQKSEFFETLTEKDTLAQVREAIGFIPWYFNLPEKGKG FEKAWEQIKDEKGFSAPFGLTTAERRSPRFRTHGTGTCEWDGAIWPFASSQTLTALGNVLNNYNQNFVAKPDYFKQMELY VQSQYYRGKPYLGEYLDETTGYWLMGDKERSRYYNHSTFNDLVITGLIGLRPRADEKIEVNPLIPQEKWDWFCLDNVLYH GNIITILWDKTGEKYKKGKGFRIFKNGKEIAVSEKLERVISN
Sequences:
>Translated_522_residues MLQHFKHKIITLSVVVACINSGCKSTVEHSQKGKWVILKEKNFKHYVDYFNTMEDENLKFAIPNDSAWAWMEKNIPLFEC PQQNFEEIYYFRWWSVRKHIKNTPQGFAITEFLVDRSYADKYNMISCALGHHINEFRWVHDPKYIEQDVKLWYRGNDGKP MNKLYKFSSWTADALYNRYLVNKDEKFLLDLYPDMVTDYAVWEKDRQRKDGLFWQHDVKDGMEESLSGGRKVQNARPTIN SYMYGNAMAISKMAELKGDKEAENKFKAKADVLQKLVETKLWNQKSEFFETLTEKDTLAQVREAIGFIPWYFNLPEKGKG FEKAWEQIKDEKGFSAPFGLTTAERRSPRFRTHGTGTCEWDGAIWPFASSQTLTALGNVLNNYNQNFVAKPDYFKQMELY VQSQYYRGKPYLGEYLDETTGYWLMGDKERSRYYNHSTFNDLVITGLIGLRPRADEKIEVNPLIPQEKWDWFCLDNVLYH GNIITILWDKTGEKYKKGKGFRIFKNGKEIAVSEKLERVISN >Mature_522_residues MLQHFKHKIITLSVVVACINSGCKSTVEHSQKGKWVILKEKNFKHYVDYFNTMEDENLKFAIPNDSAWAWMEKNIPLFEC PQQNFEEIYYFRWWSVRKHIKNTPQGFAITEFLVDRSYADKYNMISCALGHHINEFRWVHDPKYIEQDVKLWYRGNDGKP MNKLYKFSSWTADALYNRYLVNKDEKFLLDLYPDMVTDYAVWEKDRQRKDGLFWQHDVKDGMEESLSGGRKVQNARPTIN SYMYGNAMAISKMAELKGDKEAENKFKAKADVLQKLVETKLWNQKSEFFETLTEKDTLAQVREAIGFIPWYFNLPEKGKG FEKAWEQIKDEKGFSAPFGLTTAERRSPRFRTHGTGTCEWDGAIWPFASSQTLTALGNVLNNYNQNFVAKPDYFKQMELY VQSQYYRGKPYLGEYLDETTGYWLMGDKERSRYYNHSTFNDLVITGLIGLRPRADEKIEVNPLIPQEKWDWFCLDNVLYH GNIITILWDKTGEKYKKGKGFRIFKNGKEIAVSEKLERVISN
Specific function: Unknown
COG id: COG1626
COG function: function code G; Neutral trehalase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61505; Mature: 61505
Theoretical pI: Translated: 8.61; Mature: 8.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLQHFKHKIITLSVVVACINSGCKSTVEHSQKGKWVILKEKNFKHYVDYFNTMEDENLKF CCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCCCEE AIPNDSAWAWMEKNIPLFECPQQNFEEIYYFRWWSVRKHIKNTPQGFAITEFLVDRSYAD ECCCCCCEEEEECCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC KYNMISCALGHHINEFRWVHDPKYIEQDVKLWYRGNDGKPMNKLYKFSSWTADALYNRYL CCCHHHHHHHCCHHHHEECCCHHHHHHCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHH VNKDEKFLLDLYPDMVTDYAVWEKDRQRKDGLFWQHDVKDGMEESLSGGRKVQNARPTIN CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCCCCCCCCHH SYMYGNAMAISKMAELKGDKEAENKFKAKADVLQKLVETKLWNQKSEFFETLTEKDTLAQ HHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHH VREAIGFIPWYFNLPEKGKGFEKAWEQIKDEKGFSAPFGLTTAERRSPRFRTHGTGTCEW HHHHHCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCEEEE DGAIWPFASSQTLTALGNVLNNYNQNFVAKPDYFKQMELYVQSQYYRGKPYLGEYLDETT CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCC GYWLMGDKERSRYYNHSTFNDLVITGLIGLRPRADEKIEVNPLIPQEKWDWFCLDNVLYH CEEEECCHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCEEEECCEEEC GNIITILWDKTGEKYKKGKGFRIFKNGKEIAVSEKLERVISN CCEEEEEECCCCCHHHCCCCEEEEECCCEEHHHHHHHHHHCC >Mature Secondary Structure MLQHFKHKIITLSVVVACINSGCKSTVEHSQKGKWVILKEKNFKHYVDYFNTMEDENLKF CCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCCCEE AIPNDSAWAWMEKNIPLFECPQQNFEEIYYFRWWSVRKHIKNTPQGFAITEFLVDRSYAD ECCCCCCEEEEECCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC KYNMISCALGHHINEFRWVHDPKYIEQDVKLWYRGNDGKPMNKLYKFSSWTADALYNRYL CCCHHHHHHHCCHHHHEECCCHHHHHHCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHH VNKDEKFLLDLYPDMVTDYAVWEKDRQRKDGLFWQHDVKDGMEESLSGGRKVQNARPTIN CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCCCCCCCCHH SYMYGNAMAISKMAELKGDKEAENKFKAKADVLQKLVETKLWNQKSEFFETLTEKDTLAQ HHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHH VREAIGFIPWYFNLPEKGKGFEKAWEQIKDEKGFSAPFGLTTAERRSPRFRTHGTGTCEW HHHHHCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCEEEE DGAIWPFASSQTLTALGNVLNNYNQNFVAKPDYFKQMELYVQSQYYRGKPYLGEYLDETT CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCC GYWLMGDKERSRYYNHSTFNDLVITGLIGLRPRADEKIEVNPLIPQEKWDWFCLDNVLYH CEEEECCHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCEEEECCEEEC GNIITILWDKTGEKYKKGKGFRIFKNGKEIAVSEKLERVISN CCEEEEEECCCCCHHHCCCCEEEEECCCEEHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA