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The map label for this gene is yraR [H]

Identifier: 146301676

GI number: 146301676

Start: 4692358

End: 4692996

Strand: Reverse

Name: yraR [H]

Synonym: Fjoh_3938

Alternate gene names: 146301676

Gene position: 4692996-4692358 (Counterclockwise)

Preceding gene: 146301677

Following gene: 146301675

Centisome position: 76.97

GC content: 34.43

Gene sequence:

>639_bases
ATGAAAGCATTAGTAATTGGGGCGACAGGCTCAACAGGAAAGTTTTTAACAGAAGAGCTTCTTAATGATAACGATTATAC
TTCGGTTGTAACTTTTGTTAGAAAACCTTCCGGGAAAACGCATCTTAAATTAACAGAACATATTGTCGATTTTGAAAACG
TTGGGCATCTTAAAAATTTAATTACAGGCGATGTTTTGTTTTCCTGCCTCGGAACGACTTTAAAAGATGCGGGCTCAAAA
GAAAAACAATGGAAAATAGATTTTGATATTCCCGCTGCATTTGCTGCAGAAGCACAAAAAAATCAGGTAAAATCGCTTGT
TTTGGTTTCTTCTTATGGTGCATCGGCTCAAAGCAGTGTTTTTTATTCTAAGATGAAAGGAAAACTCGAAGATTATATTG
CTGCTCTTAATTTTGAGCAGTACATTATTTTTAGACCTGGACCATTAGTACGACAAGATTCTGATCGATTGGGCGAAAAA
ATAACCGTAAAAGTTATAGGAATACTCAACAAAATTGGACTTTTTAAAAAATTCAAGCCGCTTGAAACTTCACTTCTGGC
CAAAAAATTAGTGAAAGCTCCAAAAATACTTTCCTCTGGAACTACGATAGTTGAGCTCAATAAAATTTTTGAATTTTAA

Upstream 100 bases:

>100_bases
AGCAGAAAGTTTTCCTAAACTTCCGGCAATTTATTCTTTTAAAAGACTTTTGCTTTACGGAACAAAAGCATAAATACTTA
TTTTCTAAACACATTACAAT

Downstream 100 bases:

>100_bases
AATTTGGTCTTCAATACAAAAAAAAATGACCGAAATTGAACTTGCTTTTTTTAATAATTGGAAATGTTTTTTTATAAATT
TGTTTCAAAGAGAAGTAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MKALVIGATGSTGKFLTEELLNDNDYTSVVTFVRKPSGKTHLKLTEHIVDFENVGHLKNLITGDVLFSCLGTTLKDAGSK
EKQWKIDFDIPAAFAAEAQKNQVKSLVLVSSYGASAQSSVFYSKMKGKLEDYIAALNFEQYIIFRPGPLVRQDSDRLGEK
ITVKVIGILNKIGLFKKFKPLETSLLAKKLVKAPKILSSGTTIVELNKIFEF

Sequences:

>Translated_212_residues
MKALVIGATGSTGKFLTEELLNDNDYTSVVTFVRKPSGKTHLKLTEHIVDFENVGHLKNLITGDVLFSCLGTTLKDAGSK
EKQWKIDFDIPAAFAAEAQKNQVKSLVLVSSYGASAQSSVFYSKMKGKLEDYIAALNFEQYIIFRPGPLVRQDSDRLGEK
ITVKVIGILNKIGLFKKFKPLETSLLAKKLVKAPKILSSGTTIVELNKIFEF
>Mature_212_residues
MKALVIGATGSTGKFLTEELLNDNDYTSVVTFVRKPSGKTHLKLTEHIVDFENVGHLKNLITGDVLFSCLGTTLKDAGSK
EKQWKIDFDIPAAFAAEAQKNQVKSLVLVSSYGASAQSSVFYSKMKGKLEDYIAALNFEQYIIFRPGPLVRQDSDRLGEK
ITVKVIGILNKIGLFKKFKPLETSLLAKKLVKAPKILSSGTTIVELNKIFEF

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To yeast YER004W [H]

Homologues:

Organism=Homo sapiens, GI148728172, Length=172, Percent_Identity=33.7209302325581, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI148728168, Length=172, Percent_Identity=33.7209302325581, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI148728164, Length=172, Percent_Identity=33.7209302325581, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI148728166, Length=172, Percent_Identity=33.7209302325581, Blast_Score=83, Evalue=1e-16,
Organism=Escherichia coli, GI87082218, Length=170, Percent_Identity=28.8235294117647, Blast_Score=81, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI71983631, Length=212, Percent_Identity=35.8490566037736, Blast_Score=107, Evalue=5e-24,
Organism=Saccharomyces cerevisiae, GI6320840, Length=171, Percent_Identity=35.672514619883, Blast_Score=77, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000534 [H]

Pfam domain/function: PF01118 Semialdhyde_dh [H]

EC number: NA

Molecular weight: Translated: 23405; Mature: 23405

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKALVIGATGSTGKFLTEELLNDNDYTSVVTFVRKPSGKTHLKLTEHIVDFENVGHLKNL
CCEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEHHHHHHCHHHHHHHHHH
ITGDVLFSCLGTTLKDAGSKEKQWKIDFDIPAAFAAEAQKNQVKSLVLVSSYGASAQSSV
HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHEEEEECCCCCCHHHH
FYSKMKGKLEDYIAALNFEQYIIFRPGPLVRQDSDRLGEKITVKVIGILNKIGLFKKFKP
HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHCCCEEEEHHHHHHHHHHHHHHCCC
LETSLLAKKLVKAPKILSSGTTIVELNKIFEF
HHHHHHHHHHHHCCHHHCCCCEEEEHHHHHCC
>Mature Secondary Structure
MKALVIGATGSTGKFLTEELLNDNDYTSVVTFVRKPSGKTHLKLTEHIVDFENVGHLKNL
CCEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEHHHHHHCHHHHHHHHHH
ITGDVLFSCLGTTLKDAGSKEKQWKIDFDIPAAFAAEAQKNQVKSLVLVSSYGASAQSSV
HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHEEEEECCCCCCHHHH
FYSKMKGKLEDYIAALNFEQYIIFRPGPLVRQDSDRLGEKITVKVIGILNKIGLFKKFKP
HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHCCCEEEEHHHHHHHHHHHHHHCCC
LETSLLAKKLVKAPKILSSGTTIVELNKIFEF
HHHHHHHHHHHHCCHHHCCCCEEEEHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]