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The map label for this gene is ykfC [H]

Identifier: 146301469

GI number: 146301469

Start: 4416321

End: 4417718

Strand: Reverse

Name: ykfC [H]

Synonym: Fjoh_3727

Alternate gene names: 146301469

Gene position: 4417718-4416321 (Counterclockwise)

Preceding gene: 146301470

Following gene: 146301468

Centisome position: 72.46

GC content: 38.98

Gene sequence:

>1398_bases
ATGCAGAAAATATCAAATCATTTTGATAACTACCTTGGGAAGGATAGGACGGAATCCGAGAGCTACCAAGGAGTGCAGAC
CTTTATTGGGATAACTGAAAACAACCTCACGGAAGTACATTTAGGTCAGGGGAAGCTATTAGAGCTAATCCTTAATCCTT
CCAATATGAATCTGGCATATAAAAGGGTCAGATCCAATAAAGGAAGCTTTGGAATAGACAAGTTGTCCACTGAGCACTTA
CAAGAATGGCTCTTAAAACATAAAGAGTCGTTGATCGAATCGCTAGAGAAAGGGAAATACAAACCTCAGGCTGTTCGAAG
AGTTGAGATACCTAAAGAGGGAGGTAAAACAAGGTCGCTTGGTATTCCTACTGTTGTAGACCGCTTAGTCCAACAAAGTA
TTATCCAAATCCTAACGCCTATTTACGAACAAGAATTCCACACAAGTAGCCACGGTTTTAGACCTAAAAGAGGCTGTCAT
ACTGCTTTGAAAGAAGTAGAGAGTCACCTCAATGATGAGTATTGCTATGTAGTGGATTTAGACTTAGAGAAATTCTTTGA
TACTGTGAATCACAGTAGGCTTATAGAACTACTATCAAAGAAAGTCAAAGACCCACGAGTGATATCACTTATCCATAAGT
ATCTAAGAGCTGGTGTTGTTGTGGTGAACAAATTCGAAGAAAGCGTATTGGGCGTTCCTCAAGGCGGACCATTAAGTCCG
TTGTTGAGCAATATAATGCTCCACGAACTGGATAAGGAACTCGCCAGACGCGGACACCGCTTTGTACGCTACGCAGACGA
TTGTCTAATCTTCTGTAAAAGCAAGAGAGCATGTCTTCGGGTCAAGGAAAGTATAACTGCGTTTATTGAAAGCGTATTAT
ACTTAAGGGTAAACAAGGAGAAAACTACAGTGGGATATATCAGAGGAAAGAAATTCCTTGGATATAGCTTCTATAACAAA
AGTAAAGGGAAATGGGGACTTTGCGTACATCCGAAGAGTTATGGTAAACTCAAAGACAGGCTAAAGGAAATTACTAACCG
CAGTAATGGCATGGGGTACGAAAAGATTAAAGAACTCTTACGATATTACTTGCAGGGTTGGATATCCTATTTTAAACTAG
CCGATATGTCAAATAAAATTAAACGTATAGATGAATGGCTTCGATTTAGAATACGCATGTTAATATGGAAAAGCTGGAAG
AAGATAAGCACTAAATACAACAATCTAAAAAAGATTGGAGTTAAAGACAATCAAGCCTACCAATGGGCTAATACCCGAAA
AGGGTATTGTCGAACTGCGCTTAGTCCAATCCTGCAAATAACTCTAAAGATGCAAACTCTAAGAAAAGCTGGATATACGT
TCTTGACTGACATGTACCTAAAATGTATCGTAAATTAA

Upstream 100 bases:

>100_bases
CCATAAGAAGTCAGCAGAGGTCATAGTAGGTACTACTTGGTACTGAAGGACTGAACTTAATTAAGTGAGCAGTAAATGAA
TGTTACCTGTGAAGGGACGA

Downstream 100 bases:

>100_bases
GAACCGCCTTGGTACGGATCCGTATGCCGGGTGGTGTGGAAGGTCACCTAGGGAAATAATCCCTAGGTTCCTATCCGATT
ATAGAACATAGTGTTTCTAA

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 465; Mature: 465

Protein sequence:

>465_residues
MQKISNHFDNYLGKDRTESESYQGVQTFIGITENNLTEVHLGQGKLLELILNPSNMNLAYKRVRSNKGSFGIDKLSTEHL
QEWLLKHKESLIESLEKGKYKPQAVRRVEIPKEGGKTRSLGIPTVVDRLVQQSIIQILTPIYEQEFHTSSHGFRPKRGCH
TALKEVESHLNDEYCYVVDLDLEKFFDTVNHSRLIELLSKKVKDPRVISLIHKYLRAGVVVVNKFEESVLGVPQGGPLSP
LLSNIMLHELDKELARRGHRFVRYADDCLIFCKSKRACLRVKESITAFIESVLYLRVNKEKTTVGYIRGKKFLGYSFYNK
SKGKWGLCVHPKSYGKLKDRLKEITNRSNGMGYEKIKELLRYYLQGWISYFKLADMSNKIKRIDEWLRFRIRMLIWKSWK
KISTKYNNLKKIGVKDNQAYQWANTRKGYCRTALSPILQITLKMQTLRKAGYTFLTDMYLKCIVN

Sequences:

>Translated_465_residues
MQKISNHFDNYLGKDRTESESYQGVQTFIGITENNLTEVHLGQGKLLELILNPSNMNLAYKRVRSNKGSFGIDKLSTEHL
QEWLLKHKESLIESLEKGKYKPQAVRRVEIPKEGGKTRSLGIPTVVDRLVQQSIIQILTPIYEQEFHTSSHGFRPKRGCH
TALKEVESHLNDEYCYVVDLDLEKFFDTVNHSRLIELLSKKVKDPRVISLIHKYLRAGVVVVNKFEESVLGVPQGGPLSP
LLSNIMLHELDKELARRGHRFVRYADDCLIFCKSKRACLRVKESITAFIESVLYLRVNKEKTTVGYIRGKKFLGYSFYNK
SKGKWGLCVHPKSYGKLKDRLKEITNRSNGMGYEKIKELLRYYLQGWISYFKLADMSNKIKRIDEWLRFRIRMLIWKSWK
KISTKYNNLKKIGVKDNQAYQWANTRKGYCRTALSPILQITLKMQTLRKAGYTFLTDMYLKCIVN
>Mature_465_residues
MQKISNHFDNYLGKDRTESESYQGVQTFIGITENNLTEVHLGQGKLLELILNPSNMNLAYKRVRSNKGSFGIDKLSTEHL
QEWLLKHKESLIESLEKGKYKPQAVRRVEIPKEGGKTRSLGIPTVVDRLVQQSIIQILTPIYEQEFHTSSHGFRPKRGCH
TALKEVESHLNDEYCYVVDLDLEKFFDTVNHSRLIELLSKKVKDPRVISLIHKYLRAGVVVVNKFEESVLGVPQGGPLSP
LLSNIMLHELDKELARRGHRFVRYADDCLIFCKSKRACLRVKESITAFIESVLYLRVNKEKTTVGYIRGKKFLGYSFYNK
SKGKWGLCVHPKSYGKLKDRLKEITNRSNGMGYEKIKELLRYYLQGWISYFKLADMSNKIKRIDEWLRFRIRMLIWKSWK
KISTKYNNLKKIGVKDNQAYQWANTRKGYCRTALSPILQITLKMQTLRKAGYTFLTDMYLKCIVN

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=231, Percent_Identity=33.3333333333333, Blast_Score=134, Evalue=2e-32,
Organism=Saccharomyces cerevisiae, GI6226520, Length=317, Percent_Identity=29.6529968454259, Blast_Score=125, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 54148; Mature: 54148

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKISNHFDNYLGKDRTESESYQGVQTFIGITENNLTEVHLGQGKLLELILNPSNMNLAY
CCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEECCCCCCHHH
KRVRSNKGSFGIDKLSTEHLQEWLLKHKESLIESLEKGKYKPQAVRRVEIPKEGGKTRSL
HHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEECCCCCCCCCCC
GIPTVVDRLVQQSIIQILTPIYEQEFHTSSHGFRPKRGCHTALKEVESHLNDEYCYVVDL
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC
DLEKFFDTVNHSRLIELLSKKVKDPRVISLIHKYLRAGVVVVNKFEESVLGVPQGGPLSP
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEHHHHHHCCCCCCCCHHH
LLSNIMLHELDKELARRGHRFVRYADDCLIFCKSKRACLRVKESITAFIESVLYLRVNKE
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHEECCC
KTTVGYIRGKKFLGYSFYNKSKGKWGLCVHPKSYGKLKDRLKEITNRSNGMGYEKIKELL
CCEEEEEECCHHCCEEHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
RYYLQGWISYFKLADMSNKIKRIDEWLRFRIRMLIWKSWKKISTKYNNLKKIGVKDNQAY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
QWANTRKGYCRTALSPILQITLKMQTLRKAGYTFLTDMYLKCIVN
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MQKISNHFDNYLGKDRTESESYQGVQTFIGITENNLTEVHLGQGKLLELILNPSNMNLAY
CCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEECCCCCCHHH
KRVRSNKGSFGIDKLSTEHLQEWLLKHKESLIESLEKGKYKPQAVRRVEIPKEGGKTRSL
HHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEECCCCCCCCCCC
GIPTVVDRLVQQSIIQILTPIYEQEFHTSSHGFRPKRGCHTALKEVESHLNDEYCYVVDL
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC
DLEKFFDTVNHSRLIELLSKKVKDPRVISLIHKYLRAGVVVVNKFEESVLGVPQGGPLSP
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEHHHHHHCCCCCCCCHHH
LLSNIMLHELDKELARRGHRFVRYADDCLIFCKSKRACLRVKESITAFIESVLYLRVNKE
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHEECCC
KTTVGYIRGKKFLGYSFYNKSKGKWGLCVHPKSYGKLKDRLKEITNRSNGMGYEKIKELL
CCEEEEEECCHHCCEEHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
RYYLQGWISYFKLADMSNKIKRIDEWLRFRIRMLIWKSWKKISTKYNNLKKIGVKDNQAY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
QWANTRKGYCRTALSPILQITLKMQTLRKAGYTFLTDMYLKCIVN
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]