| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146301302
Identifier: 146301302
GI number: 146301302
Start: 4251209
End: 4252732
Strand: Reverse
Name: 146301302
Synonym: Fjoh_3560
Alternate gene names: NA
Gene position: 4252732-4251209 (Counterclockwise)
Preceding gene: 146301303
Following gene: 146301301
Centisome position: 69.75
GC content: 37.4
Gene sequence:
>1524_bases ATGAAAGTCCAGTTTAATTTTAGGAGTGCGGTTATTGAAATTATCTGTATGTTATATGTCCTGCTTTTTGTCTATGCGGC AACAAGCAAATTATTGGATTTTCAGCATTTTAAAATTGAGCTAGGACAGTCGCCTTTACTGAGTGCGTTTGCAGAATGGA TAGCGGTTCTGGTTCCGGCCGCTGAATATATTACATGCCTGCTTCTCATTATTCCAAGATTTAGGCTGACGGGATTATTC TTAGCTTATGGGTTAATGGTAATGTTTACGGTTTACATTTTTATTATTCTGAACTATACGTCCTTTGTGCCCTGTTCTTG CGGAGGAGTATTGGAAAAACTGGATTGGAAGTCACATATGATTTTTAATCTGGTCTTTGTATGCTTAGCTGTACTGGGGA TTCTTCTTCATGTACGCAGAAATAAAATGAATGGTCATCAGATTAAAAGAGTAAAGATAATAAGAGCATTCTCGGCGGTG ACAGTTTGCGGTATCTGCATAGTAAGTATATTGTTTATAATTTCAGAAAACATTATACATTATCACAATAAACTGACCAG ACGCTTTCCACAGACACCAATTCAGCAGGAGGCGGTGGCCGATCTGAAACTGAATTCGTTTTATATTGCAGGGGTTGACG ACTCACATGTTTATTTAGGAAATACCACCGCTCCTCTTTTAGTAACTACTTTAAATACGCGTTTATTTAAAACAGATGAA AAGATGATTGACCTGGCGCGCAAAGACCTGCCGTTCCGCGCCGTTAAGATCTCCGTGCAGAGCCCATATTTTTTTGTTAC CGATGGTACTATTCCTGTTGTTTTTAGGGGAAGAATTCAAGAATGGAAAGCTAAACTTGTATTTATTGGAGGTGAATATT TCACGACGGCTTTGGCCTTGGATTCCTTAACGGTTGCCGTAGTCACTAATAATTCAAAAACGGGTGATAATGTTCTGGGT ACCATTACCGTTGGCAAGAATGGAAAAACAATCTTAAATCCGTTAATACTGCAAAAGCAGGTGGATGGTGTTTTTGATAC TGACGGCCATCTTCTTTACAGCAAAGCGATGGATAAGGTTGTGTTTCTGTACTACTATCGGAATCAGTTTACTATTGCGG ACAAAAGTTTAAAAATTACGGACAAGGGGACTACAATTGACACGATAACAAAAGCCCAGTTAAATATTGTCCGGGATAAA AAGCACCACCAGCGAAAGTTTTCCAGCCCTCCTTTGTTTGTGAATAAAAACTGCAGCTTATATAGAAATTTACTTTTTGT TAATTCGGCTATACCAGGGCGTTATGAAGATGACAGAATATGGAAAGAAGCCAGTATTATAGACGTGTATAATTTAAACG ACAAGAGCTATCTCATGAGCTTTTGCATATACAATCTGGAAGGTAAAAAAATGAAAAGTTTTACTGTACTGGATGATAAG ATATATGTACTTGTAGGAACAAAGATCATTCGATATAAAATAGGGATGAAAATCACCTCAAAATATATAACAAAAGACAA ATAA
Upstream 100 bases:
>100_bases ACGTTTTTGAAACCTGTTTTTCGATTTATTCGGTCTAGCTTTGTAAAAGATTTCACGTTGGTTCGGTCCTGTAACGGAAT ATTAATTTAGATATGAGAAT
Downstream 100 bases:
>100_bases TCTATTGGCCAAGTAGCAGGGATTTGATCGAAAACCTGTAAAAAAGAGTAGATCATTAACCATATAAATTATATTATTAT GAAATCAAATGTTTTTAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 507; Mature: 507
Protein sequence:
>507_residues MKVQFNFRSAVIEIICMLYVLLFVYAATSKLLDFQHFKIELGQSPLLSAFAEWIAVLVPAAEYITCLLLIIPRFRLTGLF LAYGLMVMFTVYIFIILNYTSFVPCSCGGVLEKLDWKSHMIFNLVFVCLAVLGILLHVRRNKMNGHQIKRVKIIRAFSAV TVCGICIVSILFIISENIIHYHNKLTRRFPQTPIQQEAVADLKLNSFYIAGVDDSHVYLGNTTAPLLVTTLNTRLFKTDE KMIDLARKDLPFRAVKISVQSPYFFVTDGTIPVVFRGRIQEWKAKLVFIGGEYFTTALALDSLTVAVVTNNSKTGDNVLG TITVGKNGKTILNPLILQKQVDGVFDTDGHLLYSKAMDKVVFLYYYRNQFTIADKSLKITDKGTTIDTITKAQLNIVRDK KHHQRKFSSPPLFVNKNCSLYRNLLFVNSAIPGRYEDDRIWKEASIIDVYNLNDKSYLMSFCIYNLEGKKMKSFTVLDDK IYVLVGTKIIRYKIGMKITSKYITKDK
Sequences:
>Translated_507_residues MKVQFNFRSAVIEIICMLYVLLFVYAATSKLLDFQHFKIELGQSPLLSAFAEWIAVLVPAAEYITCLLLIIPRFRLTGLF LAYGLMVMFTVYIFIILNYTSFVPCSCGGVLEKLDWKSHMIFNLVFVCLAVLGILLHVRRNKMNGHQIKRVKIIRAFSAV TVCGICIVSILFIISENIIHYHNKLTRRFPQTPIQQEAVADLKLNSFYIAGVDDSHVYLGNTTAPLLVTTLNTRLFKTDE KMIDLARKDLPFRAVKISVQSPYFFVTDGTIPVVFRGRIQEWKAKLVFIGGEYFTTALALDSLTVAVVTNNSKTGDNVLG TITVGKNGKTILNPLILQKQVDGVFDTDGHLLYSKAMDKVVFLYYYRNQFTIADKSLKITDKGTTIDTITKAQLNIVRDK KHHQRKFSSPPLFVNKNCSLYRNLLFVNSAIPGRYEDDRIWKEASIIDVYNLNDKSYLMSFCIYNLEGKKMKSFTVLDDK IYVLVGTKIIRYKIGMKITSKYITKDK >Mature_507_residues MKVQFNFRSAVIEIICMLYVLLFVYAATSKLLDFQHFKIELGQSPLLSAFAEWIAVLVPAAEYITCLLLIIPRFRLTGLF LAYGLMVMFTVYIFIILNYTSFVPCSCGGVLEKLDWKSHMIFNLVFVCLAVLGILLHVRRNKMNGHQIKRVKIIRAFSAV TVCGICIVSILFIISENIIHYHNKLTRRFPQTPIQQEAVADLKLNSFYIAGVDDSHVYLGNTTAPLLVTTLNTRLFKTDE KMIDLARKDLPFRAVKISVQSPYFFVTDGTIPVVFRGRIQEWKAKLVFIGGEYFTTALALDSLTVAVVTNNSKTGDNVLG TITVGKNGKTILNPLILQKQVDGVFDTDGHLLYSKAMDKVVFLYYYRNQFTIADKSLKITDKGTTIDTITKAQLNIVRDK KHHQRKFSSPPLFVNKNCSLYRNLLFVNSAIPGRYEDDRIWKEASIIDVYNLNDKSYLMSFCIYNLEGKKMKSFTVLDDK IYVLVGTKIIRYKIGMKITSKYITKDK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57787; Mature: 57787
Theoretical pI: Translated: 9.93; Mature: 9.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVQFNFRSAVIEIICMLYVLLFVYAATSKLLDFQHFKIELGQSPLLSAFAEWIAVLVPA CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCH AEYITCLLLIIPRFRLTGLFLAYGLMVMFTVYIFIILNYTSFVPCSCGGVLEKLDWKSHM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHH IFNLVFVCLAVLGILLHVRRNKMNGHQIKRVKIIRAFSAVTVCGICIVSILFIISENIIH HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YHNKLTRRFPQTPIQQEAVADLKLNSFYIAGVDDSHVYLGNTTAPLLVTTLNTRLFKTDE HHHHHHHHCCCCCCCHHHHHCEEECEEEEEECCCCEEEECCCCCCEEEEEECCCEEECHH KMIDLARKDLPFRAVKISVQSPYFFVTDGTIPVVFRGRIQEWKAKLVFIGGEYFTTALAL HHHHHHHCCCCEEEEEEEECCCEEEEECCCEEEEEECCHHCCCEEEEEECCHHHHHHHHH DSLTVAVVTNNSKTGDNVLGTITVGKNGKTILNPLILQKQVDGVFDTDGHLLYSKAMDKV CCEEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHE VFLYYYRNQFTIADKSLKITDKGTTIDTITKAQLNIVRDKKHHQRKFSSPPLFVNKNCSL EEEEEECCEEEEECCEEEEEECCCEEEHHHHHHHHHHHCCHHHHHHCCCCCEEEECCHHH YRNLLFVNSAIPGRYEDDRIWKEASIIDVYNLNDKSYLMSFCIYNLEGKKMKSFTVLDDK HHHHHEEECCCCCCCCCCHHHCCCCEEEEEECCCHHHHHHHHHCCCCCCCEEEEEEECCE IYVLVGTKIIRYKIGMKITSKYITKDK EEEEECCEEEEEEECCEEEEHHHCCCC >Mature Secondary Structure MKVQFNFRSAVIEIICMLYVLLFVYAATSKLLDFQHFKIELGQSPLLSAFAEWIAVLVPA CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCH AEYITCLLLIIPRFRLTGLFLAYGLMVMFTVYIFIILNYTSFVPCSCGGVLEKLDWKSHM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHH IFNLVFVCLAVLGILLHVRRNKMNGHQIKRVKIIRAFSAVTVCGICIVSILFIISENIIH HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YHNKLTRRFPQTPIQQEAVADLKLNSFYIAGVDDSHVYLGNTTAPLLVTTLNTRLFKTDE HHHHHHHHCCCCCCCHHHHHCEEECEEEEEECCCCEEEECCCCCCEEEEEECCCEEECHH KMIDLARKDLPFRAVKISVQSPYFFVTDGTIPVVFRGRIQEWKAKLVFIGGEYFTTALAL HHHHHHHCCCCEEEEEEEECCCEEEEECCCEEEEEECCHHCCCEEEEEECCHHHHHHHHH DSLTVAVVTNNSKTGDNVLGTITVGKNGKTILNPLILQKQVDGVFDTDGHLLYSKAMDKV CCEEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHE VFLYYYRNQFTIADKSLKITDKGTTIDTITKAQLNIVRDKKHHQRKFSSPPLFVNKNCSL EEEEEECCEEEEECCEEEEEECCCEEEHHHHHHHHHHHCCHHHHHHCCCCCEEEECCHHH YRNLLFVNSAIPGRYEDDRIWKEASIIDVYNLNDKSYLMSFCIYNLEGKKMKSFTVLDDK HHHHHEEECCCCCCCCCCHHHCCCCEEEEEECCCHHHHHHHHHCCCCCCCEEEEEEECCE IYVLVGTKIIRYKIGMKITSKYITKDK EEEEECCEEEEEEECCEEEEHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA