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The map label for this gene is oprF [H]

Identifier: 146301218

GI number: 146301218

Start: 4142821

End: 4144758

Strand: Reverse

Name: oprF [H]

Synonym: Fjoh_3476

Alternate gene names: 146301218

Gene position: 4144758-4142821 (Counterclockwise)

Preceding gene: 146301219

Following gene: 146301217

Centisome position: 67.98

GC content: 32.92

Gene sequence:

>1938_bases
ATGAAAAAACTATATATCCTGAGTTTAGTCTTGAGCATTACGTTTAGTTTTGCTCAAAAGACTAATTTAAAACAAGCCGA
TGCATTGTTTAGAAATTATTCATATGCCGATGCTTCAAAAGCCTATGAAGAAATTTTGCAGAACATCAAAAATCCTACGG
CTCAAACTTTAAAAAATGCAGCCGATTCGTATTACTTTATTTCAGATGCACGAAATGCACTTAAATGGTATAAAAAACTA
TACGAAGTTCAGGGAAATAATTTAACCGATATTTACTATCTGCGTTATATTCAATCTATGAAAGCAGTTATGGATTATGA
TGAAGCAGATAGAGTTACAAAAGAATATCTCGATAAAAAAGGTGATAAAAAAGAAATCAGCCGTTATGTTGCCCAAAAGA
AACAACTGGACAGTTTAGCAAAAGCAAAGTCGCTTTATCAGATTAAAAACCTGGATATTAATACCAGTAAATCTGATTTT
GGAGCAACATTTTTTGGAGATAAAATCGTTTTTACATCAGCAAGAGATACTACCAAATTTAGTGAAAAACTCTATACATG
GAACAATCAGCCTTTTTTGAATTTATATGTTTCAGAAAGAAATCCGGCCGATGGAAGTTTGTTTAACGAAAAACTTTTTC
TTCCAAATGTCATGAGCAAATATCACGAAGCTACGGCAAGTTTCGATCCAAGCGGAAAAACCATTTATTATTCGACAAAC
ATTGTAAAGAAAAATAAATTGGTAGTCGATGGAGATAAAGTCAACAATTTTCAAATTGTAAAAGGCACAATTGTGGATAA
TAAACTAGAAAATCCTCAAAATGTTTTCTTTGACAATGACGATTATTCAGTTGGACATCCTTGTTTAAGCGAAGACGGAC
AATGGCTTTTCTTTGCATCAGATATGCCGGGAGGTTTTGGTGAAACCGATTTGTATGTGGTAAAAATTGCTGCTGACGGA
ACAATGAGTTCTCCATTAAATTTAGGACCAAATATCAATACAATGGGAAATGAGGTTTTTCCTTATTACAGAAATGGAAT
GCTTTATTTTTCTTCAGACGGACATTATGGTTTAGGTGATTTAGATGTTTACGAAAGCAAATTTTTAGCCGATGGAAATT
TTACAACACCTAGAAATCTTGGAGCACCAATAAACAGTAACAAAGACGATTTTACTTATGTTGTTGATAAAGCAGATACT
TATGGTTATGTTTCATCAAATAGAGCAGGAGGAAAAGGAGATGATGATATTTATTCATTTGTAAAAGGTAAACCCGTTTG
CAACCAAAGTATTTCAGGGATTGCAGTTGACAGAAAAACGAAACTTCCGTTAACAGATGTTACCATTATGGCTTACAACT
CGTTTAAAGAAGTACTTGGAGAAACAAAAACCAATTACGAAGGAAAGTATGCAATTGTTGTTCCATGTAATAAAGTTGTA
AATATGATTGCAGCAAAGCCAAATTATAGCAGCGACGAAAAAACTGTAGAAACGACAAAAGAAAACGAAGGCGAAATAAA
AGATGTCAACTTCGAGCTAAGCAACTACGACGATTTGGTAGTTAAAAAGAGAGGTGTAGAAATGGTAGATGTTCAGCCTA
TTTATTTTGATTACGACAAATACGATATAACGCCAAAAGCTATTGAAGAATTAACCAAAGTCGTTTTTATCATGCAGAAA
TTTCCAAACATTAAAATTAAAATAGAATCACATACAGATTCTCGAGGAAAAGATTCCTATAACTTAAAACTTTCAGACAA
CAGAGCCAAGTCAACAAGAGATTATATTCTCTCACAAGGCATTGATGCTTCAAGAATTGAAAGTGCCATTGGTTACGGTG
AAAGCCGATTAATCAATAAATGTAAAAACGGAGTGAAATGTACTGAAGAAGAACATTTATTAAACAGACGCTCTGACTTT
ATCATTATTCAAAAATAG

Upstream 100 bases:

>100_bases
ATAAATATAACGATGGAACACATGAGTTCATCCTGCGTTATTCGCTTAACAAAAATCAAAACAAAATCAAGTCTCCTCGA
TTCTTCTAAAAACAAAACAT

Downstream 100 bases:

>100_bases
TACTATATTTGCACTCTAATAATTTGATTATCAGTATAAAAGTATAGAACGCAGAAACCATTTGGAAGTTGGTTTTTTTA
AATTCTTTTTTAAGAATAAT

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 645; Mature: 645

Protein sequence:

>645_residues
MKKLYILSLVLSITFSFAQKTNLKQADALFRNYSYADASKAYEEILQNIKNPTAQTLKNAADSYYFISDARNALKWYKKL
YEVQGNNLTDIYYLRYIQSMKAVMDYDEADRVTKEYLDKKGDKKEISRYVAQKKQLDSLAKAKSLYQIKNLDINTSKSDF
GATFFGDKIVFTSARDTTKFSEKLYTWNNQPFLNLYVSERNPADGSLFNEKLFLPNVMSKYHEATASFDPSGKTIYYSTN
IVKKNKLVVDGDKVNNFQIVKGTIVDNKLENPQNVFFDNDDYSVGHPCLSEDGQWLFFASDMPGGFGETDLYVVKIAADG
TMSSPLNLGPNINTMGNEVFPYYRNGMLYFSSDGHYGLGDLDVYESKFLADGNFTTPRNLGAPINSNKDDFTYVVDKADT
YGYVSSNRAGGKGDDDIYSFVKGKPVCNQSISGIAVDRKTKLPLTDVTIMAYNSFKEVLGETKTNYEGKYAIVVPCNKVV
NMIAAKPNYSSDEKTVETTKENEGEIKDVNFELSNYDDLVVKKRGVEMVDVQPIYFDYDKYDITPKAIEELTKVVFIMQK
FPNIKIKIESHTDSRGKDSYNLKLSDNRAKSTRDYILSQGIDASRIESAIGYGESRLINKCKNGVKCTEEEHLLNRRSDF
IIIQK

Sequences:

>Translated_645_residues
MKKLYILSLVLSITFSFAQKTNLKQADALFRNYSYADASKAYEEILQNIKNPTAQTLKNAADSYYFISDARNALKWYKKL
YEVQGNNLTDIYYLRYIQSMKAVMDYDEADRVTKEYLDKKGDKKEISRYVAQKKQLDSLAKAKSLYQIKNLDINTSKSDF
GATFFGDKIVFTSARDTTKFSEKLYTWNNQPFLNLYVSERNPADGSLFNEKLFLPNVMSKYHEATASFDPSGKTIYYSTN
IVKKNKLVVDGDKVNNFQIVKGTIVDNKLENPQNVFFDNDDYSVGHPCLSEDGQWLFFASDMPGGFGETDLYVVKIAADG
TMSSPLNLGPNINTMGNEVFPYYRNGMLYFSSDGHYGLGDLDVYESKFLADGNFTTPRNLGAPINSNKDDFTYVVDKADT
YGYVSSNRAGGKGDDDIYSFVKGKPVCNQSISGIAVDRKTKLPLTDVTIMAYNSFKEVLGETKTNYEGKYAIVVPCNKVV
NMIAAKPNYSSDEKTVETTKENEGEIKDVNFELSNYDDLVVKKRGVEMVDVQPIYFDYDKYDITPKAIEELTKVVFIMQK
FPNIKIKIESHTDSRGKDSYNLKLSDNRAKSTRDYILSQGIDASRIESAIGYGESRLINKCKNGVKCTEEEHLLNRRSDF
IIIQK
>Mature_645_residues
MKKLYILSLVLSITFSFAQKTNLKQADALFRNYSYADASKAYEEILQNIKNPTAQTLKNAADSYYFISDARNALKWYKKL
YEVQGNNLTDIYYLRYIQSMKAVMDYDEADRVTKEYLDKKGDKKEISRYVAQKKQLDSLAKAKSLYQIKNLDINTSKSDF
GATFFGDKIVFTSARDTTKFSEKLYTWNNQPFLNLYVSERNPADGSLFNEKLFLPNVMSKYHEATASFDPSGKTIYYSTN
IVKKNKLVVDGDKVNNFQIVKGTIVDNKLENPQNVFFDNDDYSVGHPCLSEDGQWLFFASDMPGGFGETDLYVVKIAADG
TMSSPLNLGPNINTMGNEVFPYYRNGMLYFSSDGHYGLGDLDVYESKFLADGNFTTPRNLGAPINSNKDDFTYVVDKADT
YGYVSSNRAGGKGDDDIYSFVKGKPVCNQSISGIAVDRKTKLPLTDVTIMAYNSFKEVLGETKTNYEGKYAIVVPCNKVV
NMIAAKPNYSSDEKTVETTKENEGEIKDVNFELSNYDDLVVKKRGVEMVDVQPIYFDYDKYDITPKAIEELTKVVFIMQK
FPNIKIKIESHTDSRGKDSYNLKLSDNRAKSTRDYILSQGIDASRIESAIGYGESRLINKCKNGVKCTEEEHLLNRRSDF
IIIQK

Specific function: Has porin activity, forming small water-filled channels. Also has a structural role in determining cell shape and ability to grow in low-osmolarity medium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 73167; Mature: 73167

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLYILSLVLSITFSFAQKTNLKQADALFRNYSYADASKAYEEILQNIKNPTAQTLKNA
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHH
ADSYYFISDARNALKWYKKLYEVQGNNLTDIYYLRYIQSMKAVMDYDEADRVTKEYLDKK
CCCEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
GDKKEISRYVAQKKQLDSLAKAKSLYQIKNLDINTSKSDFGATFFGDKIVFTSARDTTKF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCEEEEECCCCCHHH
SEKLYTWNNQPFLNLYVSERNPADGSLFNEKLFLPNVMSKYHEATASFDPSGKTIYYSTN
HHHHEECCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEC
IVKKNKLVVDGDKVNNFQIVKGTIVDNKLENPQNVFFDNDDYSVGHPCLSEDGQWLFFAS
EEECCEEEEECCCCCCEEEEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEC
DMPGGFGETDLYVVKIAADGTMSSPLNLGPNINTMGNEVFPYYRNGMLYFSSDGHYGLGD
CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEEECCCCCCCCC
LDVYESKFLADGNFTTPRNLGAPINSNKDDFTYVVDKADTYGYVSSNRAGGKGDDDIYSF
CHHHHHHEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCCCCCCCHHHHHH
VKGKPVCNQSISGIAVDRKTKLPLTDVTIMAYNSFKEVLGETKTNYEGKYAIVVPCNKVV
HCCCCCCCCCCCCEEECCCCCCCCCCEEEEEHHHHHHHHCCCCCCCCCCEEEEEEHHHHH
NMIAAKPNYSSDEKTVETTKENEGEIKDVNFELSNYDDLVVKKRGVEMVDVQPIYFDYDK
HHHCCCCCCCCCCHHHHHCCCCCCCEEEEEEEECCCCCEEEECCCCEEEEEEEEEEECCC
YDITPKAIEELTKVVFIMQKFPNIKIKIESHTDSRGKDSYNLKLSDNRAKSTRDYILSQG
CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHCC
IDASRIESAIGYGESRLINKCKNGVKCTEEEHLLNRRSDFIIIQK
CCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHCCCCCEEEEEC
>Mature Secondary Structure
MKKLYILSLVLSITFSFAQKTNLKQADALFRNYSYADASKAYEEILQNIKNPTAQTLKNA
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHH
ADSYYFISDARNALKWYKKLYEVQGNNLTDIYYLRYIQSMKAVMDYDEADRVTKEYLDKK
CCCEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
GDKKEISRYVAQKKQLDSLAKAKSLYQIKNLDINTSKSDFGATFFGDKIVFTSARDTTKF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCEEEEECCCCCHHH
SEKLYTWNNQPFLNLYVSERNPADGSLFNEKLFLPNVMSKYHEATASFDPSGKTIYYSTN
HHHHEECCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEC
IVKKNKLVVDGDKVNNFQIVKGTIVDNKLENPQNVFFDNDDYSVGHPCLSEDGQWLFFAS
EEECCEEEEECCCCCCEEEEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEC
DMPGGFGETDLYVVKIAADGTMSSPLNLGPNINTMGNEVFPYYRNGMLYFSSDGHYGLGD
CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEEECCCCCCCCC
LDVYESKFLADGNFTTPRNLGAPINSNKDDFTYVVDKADTYGYVSSNRAGGKGDDDIYSF
CHHHHHHEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCCCCCCCHHHHHH
VKGKPVCNQSISGIAVDRKTKLPLTDVTIMAYNSFKEVLGETKTNYEGKYAIVVPCNKVV
HCCCCCCCCCCCCEEECCCCCCCCCCEEEEEHHHHHHHHCCCCCCCCCCEEEEEEHHHHH
NMIAAKPNYSSDEKTVETTKENEGEIKDVNFELSNYDDLVVKKRGVEMVDVQPIYFDYDK
HHHCCCCCCCCCCHHHHHCCCCCCCEEEEEEEECCCCCEEEECCCCEEEEEEEEEEECCC
YDITPKAIEELTKVVFIMQKFPNIKIKIESHTDSRGKDSYNLKLSDNRAKSTRDYILSQG
CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHCC
IDASRIESAIGYGESRLINKCKNGVKCTEEEHLLNRRSDFIIIQK
CCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1898935 [H]