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The map label for this gene is rtcB [H]

Identifier: 146301200

GI number: 146301200

Start: 4123397

End: 4124788

Strand: Reverse

Name: rtcB [H]

Synonym: Fjoh_3458

Alternate gene names: 146301200

Gene position: 4124788-4123397 (Counterclockwise)

Preceding gene: 146301201

Following gene: 146301199

Centisome position: 67.65

GC content: 38.51

Gene sequence:

>1392_bases
ATGGGAAATAAACTAACTGGAAAAGACCTGATTAAATTAGGTTTTCCAAAGAACAATTCAATAAATATCGCTTTAGGGCA
GATAAACAGATATAGAAAAAGAGAAAAAAAGGAATCTATTCTAACAGAAGCAAAAGATGTTTTGCTAAATCCTGAAAAGT
ATGAAGGAAACGGAACCTGGGGAAAAGTTGCTGAAGGTTTAATTAAACCCGTTCAGGTAAGAATGCACCAGCTTAATAAT
ACAAGAGCCCCTTTTACCATTTTTGGTGAAAATGAAATTGATCAGCAGGCAAAATTCCAATTGTACGATTCATTGAAACT
GCCAGTTTCGGTTGCGGGAGCTTTAATGCCAGATGCACATTCCGGATATGGATTACCAATTGGAGGTGTTTTAGCAACAG
ATAACGCTGTGATTCCATACGGAGTTGGTGTTGATATTGGATGTCGAATGAGTCTTTCAATTTTTGATTTGCCAGCTTCT
CATTTTAAAGGAAAAGAACATCAGTTAGAGGCAATTTTAAAAGACAATACAAAATTTGGAATGTATGAAACGCATGTGTC
AAGAGTCGATCATGAAGTTTTTCATAAAAGCGAGTTTCAGGATATTCCATTGCTGAAAAATCTTTTACCAAAGGCCTACA
AACAATTAGGAACTTCTGGAGGAGGAAACCATTTTGTGGAATTTGGAATTGCTAAAATTGAGAATCCGGAGAACGAATGG
AAATTGGAAAAAGGTGAATATTTTGCTGTTCTTTCGCATAGCGGTTCGCGTGGTTTGGGTGCAAACATTGCAAAGCATTA
CACGTATTTGGCCACAAAACAATGTCCGTTACCAAAAAATGTACAGCATTTGGCCTGGTTAGATTTAAATACGCATGACG
GTCAGGAATACTGGCTGGCAATGAATTTAGCCGGAGAATATGCAAAGGCCTGCCATGACGATATTCACAGACGAATTGCC
AAAGCGATTGGAAAAAGGGTAGTGGTAACAATTGAAAACCATCACAATTTTGCATGGAAAGAAATGGTAAACGGCCAGGA
ATGTATTGTACACAGAAAAGGTGCAACGCCTGCAGGTGAAGGACAATTGGGAATTATTCCCGGTTCGATGACGGCACCAG
GTTACATTGTAAAAGGTAAAGGAAATGCTGATAGTTTAAATTCAGCTTCGCATGGTGCGGGACGTTTGTTTTCGCGCGCA
AAATGTAAAAGCACTTTTACGCAAAGCGAAATTAAAAAGGTTTTGAAAGCCAATGATGTAACCTTGATTGGCGGCAATAT
TGATGAAGCACCAATGGCATACAAAGACATCGAGAAAGTAATGGCGAATCAAACGGATTTAGTTGAAGTTTTGGGAACAT
TTACACCGAAGATTGTTAGAATGGACCGCTAA

Upstream 100 bases:

>100_bases
GAGTTATTATGAAAAAGAAAACCCAAAAGAGACAAGCCCAATTAAAAATAAAAGTCTAAACACTTTGTATCAACAATATT
TAGACGAAATGATATAAATA

Downstream 100 bases:

>100_bases
AAATTAAAAATTATGGAAAGATTTCAAGATGAAAATAAATGGTTAGGAAGTTTTGCAAATGAAATTTTTGTAAAATGTCC
AAAATGTGATTCTAAATCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 463; Mature: 462

Protein sequence:

>463_residues
MGNKLTGKDLIKLGFPKNNSINIALGQINRYRKREKKESILTEAKDVLLNPEKYEGNGTWGKVAEGLIKPVQVRMHQLNN
TRAPFTIFGENEIDQQAKFQLYDSLKLPVSVAGALMPDAHSGYGLPIGGVLATDNAVIPYGVGVDIGCRMSLSIFDLPAS
HFKGKEHQLEAILKDNTKFGMYETHVSRVDHEVFHKSEFQDIPLLKNLLPKAYKQLGTSGGGNHFVEFGIAKIENPENEW
KLEKGEYFAVLSHSGSRGLGANIAKHYTYLATKQCPLPKNVQHLAWLDLNTHDGQEYWLAMNLAGEYAKACHDDIHRRIA
KAIGKRVVVTIENHHNFAWKEMVNGQECIVHRKGATPAGEGQLGIIPGSMTAPGYIVKGKGNADSLNSASHGAGRLFSRA
KCKSTFTQSEIKKVLKANDVTLIGGNIDEAPMAYKDIEKVMANQTDLVEVLGTFTPKIVRMDR

Sequences:

>Translated_463_residues
MGNKLTGKDLIKLGFPKNNSINIALGQINRYRKREKKESILTEAKDVLLNPEKYEGNGTWGKVAEGLIKPVQVRMHQLNN
TRAPFTIFGENEIDQQAKFQLYDSLKLPVSVAGALMPDAHSGYGLPIGGVLATDNAVIPYGVGVDIGCRMSLSIFDLPAS
HFKGKEHQLEAILKDNTKFGMYETHVSRVDHEVFHKSEFQDIPLLKNLLPKAYKQLGTSGGGNHFVEFGIAKIENPENEW
KLEKGEYFAVLSHSGSRGLGANIAKHYTYLATKQCPLPKNVQHLAWLDLNTHDGQEYWLAMNLAGEYAKACHDDIHRRIA
KAIGKRVVVTIENHHNFAWKEMVNGQECIVHRKGATPAGEGQLGIIPGSMTAPGYIVKGKGNADSLNSASHGAGRLFSRA
KCKSTFTQSEIKKVLKANDVTLIGGNIDEAPMAYKDIEKVMANQTDLVEVLGTFTPKIVRMDR
>Mature_462_residues
GNKLTGKDLIKLGFPKNNSINIALGQINRYRKREKKESILTEAKDVLLNPEKYEGNGTWGKVAEGLIKPVQVRMHQLNNT
RAPFTIFGENEIDQQAKFQLYDSLKLPVSVAGALMPDAHSGYGLPIGGVLATDNAVIPYGVGVDIGCRMSLSIFDLPASH
FKGKEHQLEAILKDNTKFGMYETHVSRVDHEVFHKSEFQDIPLLKNLLPKAYKQLGTSGGGNHFVEFGIAKIENPENEWK
LEKGEYFAVLSHSGSRGLGANIAKHYTYLATKQCPLPKNVQHLAWLDLNTHDGQEYWLAMNLAGEYAKACHDDIHRRIAK
AIGKRVVVTIENHHNFAWKEMVNGQECIVHRKGATPAGEGQLGIIPGSMTAPGYIVKGKGNADSLNSASHGAGRLFSRAK
CKSTFTQSEIKKVLKANDVTLIGGNIDEAPMAYKDIEKVMANQTDLVEVLGTFTPKIVRMDR

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=403, Percent_Identity=27.2952853598015, Blast_Score=97, Evalue=3e-20,
Organism=Escherichia coli, GI2367224, Length=411, Percent_Identity=34.0632603406326, Blast_Score=182, Evalue=3e-47,
Organism=Caenorhabditis elegans, GI17506665, Length=419, Percent_Identity=25.2983293556086, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24585217, Length=428, Percent_Identity=27.1028037383178, Blast_Score=96, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 51109; Mature: 50978

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNKLTGKDLIKLGFPKNNSINIALGQINRYRKREKKESILTEAKDVLLNPEKYEGNGTW
CCCCCCCCCCEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
GKVAEGLIKPVQVRMHQLNNTRAPFTIFGENEIDQQAKFQLYDSLKLPVSVAGALMPDAH
HHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCCCCHHHHHHCCCCCC
SGYGLPIGGVLATDNAVIPYGVGVDIGCRMSLSIFDLPASHFKGKEHQLEAILKDNTKFG
CCCCCCCCCEEECCCEEEEECCCCCCCCEEEEEEEECCHHHHCCCHHHHHHHHHCCCCCC
MYETHVSRVDHEVFHKSEFQDIPLLKNLLPKAYKQLGTSGGGNHFVEFGIAKIENPENEW
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECHHHCCCCCHHC
KLEKGEYFAVLSHSGSRGLGANIAKHYTYLATKQCPLPKNVQHLAWLDLNTHDGQEYWLA
EECCCCEEEEEECCCCCCCCCHHHHHHHEEEECCCCCCCCCCEEEEEECCCCCCCEEEEE
MNLAGEYAKACHDDIHRRIAKAIGKRVVVTIENHHNFAWKEMVNGQECIVHRKGATPAGE
EECCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHCCCCCEEEECCCCCCCCC
GQLGIIPGSMTAPGYIVKGKGNADSLNSASHGAGRLFSRAKCKSTFTQSEIKKVLKANDV
CEEEEECCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCE
TLIGGNIDEAPMAYKDIEKVMANQTDLVEVLGTFTPKIVRMDR
EEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCEEEECC
>Mature Secondary Structure 
GNKLTGKDLIKLGFPKNNSINIALGQINRYRKREKKESILTEAKDVLLNPEKYEGNGTW
CCCCCCCCCEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
GKVAEGLIKPVQVRMHQLNNTRAPFTIFGENEIDQQAKFQLYDSLKLPVSVAGALMPDAH
HHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCCCCHHHHHHCCCCCC
SGYGLPIGGVLATDNAVIPYGVGVDIGCRMSLSIFDLPASHFKGKEHQLEAILKDNTKFG
CCCCCCCCCEEECCCEEEEECCCCCCCCEEEEEEEECCHHHHCCCHHHHHHHHHCCCCCC
MYETHVSRVDHEVFHKSEFQDIPLLKNLLPKAYKQLGTSGGGNHFVEFGIAKIENPENEW
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECHHHCCCCCHHC
KLEKGEYFAVLSHSGSRGLGANIAKHYTYLATKQCPLPKNVQHLAWLDLNTHDGQEYWLA
EECCCCEEEEEECCCCCCCCCHHHHHHHEEEECCCCCCCCCCEEEEEECCCCCCCEEEEE
MNLAGEYAKACHDDIHRRIAKAIGKRVVVTIENHHNFAWKEMVNGQECIVHRKGATPAGE
EECCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHCCCCCEEEECCCCCCCCC
GQLGIIPGSMTAPGYIVKGKGNADSLNSASHGAGRLFSRAKCKSTFTQSEIKKVLKANDV
CEEEEECCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCE
TLIGGNIDEAPMAYKDIEKVMANQTDLVEVLGTFTPKIVRMDR
EEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 9738023 [H]