BacMap

Definition	Flavobacterium johnsoniae UW101 chromosome, complete genome.
Accession	NC_009441
Length	6,096,872

Click here to switch to the map view.

The map label for this gene is yhxC [H]

Identifier: 146301098

GI number: 146301098

Start: 4016273

End: 4017121

Strand: Direct

Name: yhxC [H]

Synonym: Fjoh_3356

Alternate gene names: 146301098

Gene position: 4016273-4017121 (Clockwise)

Preceding gene: 146301092

Following gene: 146301099

Centisome position: 65.87

GC content: 40.28

Gene sequence:

>849_bases
ATGAAAAAACCTAAGACATTCCCGGAACAGAAACAAGAACTTCCGGGAAACGAACATAAAATGAATCCGGAACCAGAAAT
TATTAGAGAAAATTATACCGGAAGCGGCAAGCTTTTGGGTAAAACTGCTTTTATTACTGGCGGAGACAGTGGTATTGGCC
GAAGTGCGGCCGTGCATTTTGCCCGTGAAGGCGCTAACATTGCAATTGTGTATTTAAAAGAAGATAAAGACGCAAAGCTG
ACCAAAGAAATGATTGAAAAAGAAGGACAGCAATGCCTGCTTATAAGCGGTGATCTTAAAGATGAAAAATTCTGTAAAGA
GGCAGTCAAAAAATGTGTTTCGACTTTTAAAACCATAAATGTTCTGGTGAATAATGCAGCCATACAATTTCCGCAGAATG
AATTAGAAAAAATTACCGCTGCACAACTGCATAAAACTTTCGAAACCAATATTTATCCCTATTTCTATATTACCAAAGCC
GCACTTCCGCATTTAAAAGAAGGCGATACAATTATCAATACCAGTTCTGTTACGGCTTATCGCGGCAGTGAACACTTAGC
AGATTATGCCAGTACAAAAGGTGCAATTGTTAGTTTTACAAGATCACTTTCGTCTATGCTTGCAAAAAGAAAAATCAGAG
TAAATGGTGTTGCACCTGGGCCAATATGGACACCGTTAATCGTGGCAACTTTCGACAAGGTTTCTGATTTTGGAAAAGAC
AATCCGATGGAAAGAGCCGGACAGCCGTCTGAAGTTGGGCCCGCTTATGTTTTTCTGGCCTGCGAAGACAGCAGTTATAT
TACCGGACAGTTTATTCACATTAACGGTGGTGAATTAGTTGGGGGCTAG

Upstream 100 bases:

>100_bases
TTTTCATCTTTTTGAGACAAAATTATATTTCTTACAGTCTGTATTTTCATACAAGACACACTAATTTTAAGTTAGAAGAA
TATCTTAAAATTACAATGCC

Downstream 100 bases:

>100_bases
ATTTTTTTTGCCCGCAGATTTAGCAGATTGAACAGGTTTACACAATGTTTTATGAACGAATAACCGCAGAAAAAACTCAA
AGGTCTAGAATATCAGCATC

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: ORFX [H]

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MKKPKTFPEQKQELPGNEHKMNPEPEIIRENYTGSGKLLGKTAFITGGDSGIGRSAAVHFAREGANIAIVYLKEDKDAKL
TKEMIEKEGQQCLLISGDLKDEKFCKEAVKKCVSTFKTINVLVNNAAIQFPQNELEKITAAQLHKTFETNIYPYFYITKA
ALPHLKEGDTIINTSSVTAYRGSEHLADYASTKGAIVSFTRSLSSMLAKRKIRVNGVAPGPIWTPLIVATFDKVSDFGKD
NPMERAGQPSEVGPAYVFLACEDSSYITGQFIHINGGELVGG

Sequences:

>Translated_282_residues
MKKPKTFPEQKQELPGNEHKMNPEPEIIRENYTGSGKLLGKTAFITGGDSGIGRSAAVHFAREGANIAIVYLKEDKDAKL
TKEMIEKEGQQCLLISGDLKDEKFCKEAVKKCVSTFKTINVLVNNAAIQFPQNELEKITAAQLHKTFETNIYPYFYITKA
ALPHLKEGDTIINTSSVTAYRGSEHLADYASTKGAIVSFTRSLSSMLAKRKIRVNGVAPGPIWTPLIVATFDKVSDFGKD
NPMERAGQPSEVGPAYVFLACEDSSYITGQFIHINGGELVGG
>Mature_282_residues
MKKPKTFPEQKQELPGNEHKMNPEPEIIRENYTGSGKLLGKTAFITGGDSGIGRSAAVHFAREGANIAIVYLKEDKDAKL
TKEMIEKEGQQCLLISGDLKDEKFCKEAVKKCVSTFKTINVLVNNAAIQFPQNELEKITAAQLHKTFETNIYPYFYITKA
ALPHLKEGDTIINTSSVTAYRGSEHLADYASTKGAIVSFTRSLSSMLAKRKIRVNGVAPGPIWTPLIVATFDKVSDFGKD
NPMERAGQPSEVGPAYVFLACEDSSYITGQFIHINGGELVGG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI59889578, Length=234, Percent_Identity=30.7692307692308, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI40254992, Length=244, Percent_Identity=31.1475409836066, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI19923817, Length=263, Percent_Identity=30.0380228136882, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI32483357, Length=255, Percent_Identity=29.4117647058824, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI15277342, Length=259, Percent_Identity=30.8880308880309, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI10190704, Length=293, Percent_Identity=26.2798634812287, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI4758504, Length=252, Percent_Identity=26.984126984127, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI31542939, Length=208, Percent_Identity=28.8461538461538, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI5031737, Length=266, Percent_Identity=27.8195488721804, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI7705925, Length=246, Percent_Identity=28.0487804878049, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI126723750, Length=282, Percent_Identity=23.4042553191489, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI83715985, Length=252, Percent_Identity=25, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI66933014, Length=252, Percent_Identity=27.3809523809524, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI210032110, Length=185, Percent_Identity=28.6486486486486, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI224922801, Length=169, Percent_Identity=29.585798816568, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI40254986, Length=149, Percent_Identity=34.2281879194631, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI7657478, Length=190, Percent_Identity=31.0526315789474, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI4503301, Length=252, Percent_Identity=26.5873015873016, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI32455239, Length=183, Percent_Identity=24.0437158469945, Blast_Score=65, Evalue=7e-11,
Organism=Homo sapiens, GI5031765, Length=183, Percent_Identity=24.0437158469945, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1789378, Length=291, Percent_Identity=43.9862542955326, Blast_Score=259, Evalue=1e-70,
Organism=Escherichia coli, GI2367175, Length=251, Percent_Identity=34.6613545816733, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI87082100, Length=258, Percent_Identity=34.1085271317829, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI87082160, Length=256, Percent_Identity=33.59375, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI1787335, Length=241, Percent_Identity=31.5352697095436, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1787905, Length=245, Percent_Identity=28.5714285714286, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1789208, Length=249, Percent_Identity=28.9156626506024, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1790717, Length=255, Percent_Identity=30.5882352941176, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1788459, Length=243, Percent_Identity=28.8065843621399, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI2367365, Length=242, Percent_Identity=30.1652892561983, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1787526, Length=233, Percent_Identity=24.4635193133047, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786812, Length=255, Percent_Identity=22.7450980392157, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1786701, Length=216, Percent_Identity=28.2407407407407, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1789057, Length=259, Percent_Identity=22.7799227799228, Blast_Score=61, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17561402, Length=247, Percent_Identity=32.7935222672065, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17560676, Length=249, Percent_Identity=30.9236947791165, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI25147288, Length=248, Percent_Identity=30.241935483871, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17555706, Length=247, Percent_Identity=32.3886639676113, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17560150, Length=261, Percent_Identity=32.183908045977, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI72000259, Length=265, Percent_Identity=31.6981132075472, Blast_Score=101, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI193204405, Length=265, Percent_Identity=30.9433962264151, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17562904, Length=259, Percent_Identity=32.8185328185328, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17551412, Length=257, Percent_Identity=31.9066147859922, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17562990, Length=258, Percent_Identity=32.5581395348837, Blast_Score=98, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI17536025, Length=253, Percent_Identity=28.0632411067194, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17562910, Length=263, Percent_Identity=32.319391634981, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17544670, Length=264, Percent_Identity=29.1666666666667, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17562906, Length=261, Percent_Identity=31.0344827586207, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17538480, Length=263, Percent_Identity=30.7984790874525, Blast_Score=95, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17531453, Length=260, Percent_Identity=31.9230769230769, Blast_Score=95, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17538182, Length=253, Percent_Identity=30.0395256916996, Blast_Score=94, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI17559104, Length=256, Percent_Identity=28.90625, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=30.3030303030303, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17560332, Length=259, Percent_Identity=30.1158301158301, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI71994600, Length=248, Percent_Identity=27.4193548387097, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI71994604, Length=247, Percent_Identity=27.1255060728745, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17560220, Length=266, Percent_Identity=29.3233082706767, Blast_Score=88, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17536651, Length=257, Percent_Identity=27.6264591439689, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17563726, Length=257, Percent_Identity=29.5719844357977, Blast_Score=87, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI71982365, Length=248, Percent_Identity=27.8225806451613, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17538486, Length=272, Percent_Identity=29.4117647058824, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17561272, Length=274, Percent_Identity=27.7372262773723, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI115534694, Length=254, Percent_Identity=26.3779527559055, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17565030, Length=269, Percent_Identity=27.1375464684015, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17564282, Length=187, Percent_Identity=31.0160427807487, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17567345, Length=194, Percent_Identity=28.8659793814433, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17568967, Length=191, Percent_Identity=26.7015706806283, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193203117, Length=189, Percent_Identity=29.6296296296296, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193203115, Length=186, Percent_Identity=29.5698924731183, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17558628, Length=252, Percent_Identity=28.968253968254, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=194, Percent_Identity=28.3505154639175, Blast_Score=72, Evalue=9e-14,
Organism=Saccharomyces cerevisiae, GI6322226, Length=193, Percent_Identity=27.979274611399, Blast_Score=64, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=246, Percent_Identity=24.7967479674797, Blast_Score=63, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24639444, Length=253, Percent_Identity=31.2252964426877, Blast_Score=115, Evalue=4e-26,
Organism=Drosophila melanogaster, GI28571526, Length=246, Percent_Identity=31.3008130081301, Blast_Score=106, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24644339, Length=247, Percent_Identity=30.3643724696356, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI21357041, Length=246, Percent_Identity=29.6747967479675, Blast_Score=101, Evalue=6e-22,
Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=30.9236947791165, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=30, Blast_Score=99, Evalue=4e-21,
Organism=Drosophila melanogaster, GI24643142, Length=246, Percent_Identity=29.6747967479675, Blast_Score=99, Evalue=4e-21,
Organism=Drosophila melanogaster, GI17737361, Length=252, Percent_Identity=27.3809523809524, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24644337, Length=250, Percent_Identity=35.6, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI281364892, Length=180, Percent_Identity=28.8888888888889, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI21357673, Length=200, Percent_Identity=30, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI161076933, Length=190, Percent_Identity=25.7894736842105, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24584748, Length=190, Percent_Identity=25.7894736842105, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI21358495, Length=195, Percent_Identity=27.1794871794872, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24665243, Length=202, Percent_Identity=25.2475247524752, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 30894; Mature: 30894

Theoretical pI: Translated: 8.30; Mature: 8.30

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKPKTFPEQKQELPGNEHKMNPEPEIIRENYTGSGKLLGKTAFITGGDSGIGRSAAVHF
CCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHH
AREGANIAIVYLKEDKDAKLTKEMIEKEGQQCLLISGDLKDEKFCKEAVKKCVSTFKTIN
EECCCCEEEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
VLVNNAAIQFPQNELEKITAAQLHKTFETNIYPYFYITKAALPHLKEGDTIINTSSVTAY
HHEECCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEECHHCCCCCCCCEEEECCCEEEE
RGSEHLADYASTKGAIVSFTRSLSSMLAKRKIRVNGVAPGPIWTPLIVATFDKVSDFGKD
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHHHHCCCC
NPMERAGQPSEVGPAYVFLACEDSSYITGQFIHINGGELVGG
CCHHHCCCCCCCCCEEEEEEECCCCEEEEEEEEEECCEECCC
>Mature Secondary Structure
MKKPKTFPEQKQELPGNEHKMNPEPEIIRENYTGSGKLLGKTAFITGGDSGIGRSAAVHF
CCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHH
AREGANIAIVYLKEDKDAKLTKEMIEKEGQQCLLISGDLKDEKFCKEAVKKCVSTFKTIN
EECCCCEEEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
VLVNNAAIQFPQNELEKITAAQLHKTFETNIYPYFYITKAALPHLKEGDTIINTSSVTAY
HHEECCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEECHHCCCCCCCCEEEECCCEEEE
RGSEHLADYASTKGAIVSFTRSLSSMLAKRKIRVNGVAPGPIWTPLIVATFDKVSDFGKD
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHHHHCCCC
NPMERAGQPSEVGPAYVFLACEDSSYITGQFIHINGGELVGG
CCHHHCCCCCCCCCEEEEEEECCCCEEEEEEEEEECCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377; 8196543 [H]