| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146301004
Identifier: 146301004
GI number: 146301004
Start: 3899844
End: 3901652
Strand: Reverse
Name: 146301004
Synonym: Fjoh_3260
Alternate gene names: NA
Gene position: 3901652-3899844 (Counterclockwise)
Preceding gene: 146301005
Following gene: 146301003
Centisome position: 63.99
GC content: 35.49
Gene sequence:
>1809_bases ATGGCACATTTTTCAGAACAAGTACATATAACTATAGGAAGTTTTACCCAAAACGTTGTTTATTATGATTTAAAGCTATC TCAAAAAATGGCCGATCATCATCATTTTTCTTTTGTTTGGCAATATACAGGTAAAGCCGTAATTAACCCGGCAGATCAGG CTAAGGCTCTTAGAAGCTATCTTGGAGACGAAGTAATTTTTACTTTTAAAAGTCTTACTGGGATCAGATTAATGAGCAAA GGTATAATTACTGAACTTTCATCGATTGATGTTGATGGAAGTCCGGCAGGATTACACGTTTCTGGTGTAAGTCACAGTAT TGTTATTGATGATATGAAAAAATCAAGAACATTTAAAGACCGCAGTATGGATGATATCGTATTGGGGATTTTTGCTGAAG GACCGGGAGAATTTTATCAAAGAGATTCTATTAAATCGACTTATCTTAAAGAATTTAAAAATCTTTTACAATATAACGAA ACTAGTTTTGAATTTTTAAAAAGAATAGCAGCACGTTATGGACAATGGTTTTATTTTGACGGAATGCGTATGCAGTTCGG ACAGACAAAAAGCAGCCAGACCAAGCTTATAAATGGAGCTTCATTACACAGCTTTAAGATACAAGCTAATATGGCTTCAC ATAAAATTTCGCTGAACGGTTATGATTATAAAAATGTAGCAACTTTTCGTGAGTCAGCACCTAAGACTTCATCTGGAAGT AAAGACAGCTTTGCCGCTATTGTAGGTTATAATCAAGGAACTGTAGCAAATTCTGATTTAAATAATGGGGCTTATACCGC AAATGCCACAAACAAAGACGAACTTGATGAAATGATAAAACTGCAGACTGCGGGCAGTGATGCCAACAGTGTTTATTACA GCGGTATTTCTTATTTTCCAATTGGTCTTGGACAGGTATTTACAATAGTAAACCAAACAGTAGCACATGAATTAATTGCT ATTGAAGTTGTACATCATTCTCAGGTGCATGGAAATTATTCTTGTGAGTTTAAAGCAATTCCTGCAGATGTGTCAGCACC ACACTATACAAATGTATTTGTTTATGGCAAAGCCGAAACACAGCCTGCACAAGTAAAAGATAATAATGATCCTGAAGGAT TAGGACGTGTAAGAGTAGAATTTTATGGTGCAAGCGGTACAGCAGTTACAGATTGGATAAGAATGGTGCAGCCTTATTCT GGTTCAGGAAAAGGATTTTATTTTGTTCCTGAAATCGGAGAAGAAGTTTTAATTGGTTTTGAAGGCAATAACGTCCAGAA TCCTTATGTAATTGGTGCGCAGTATAACGGACAAGATTCAAGTGGTTATGCAGATGCACAGAATAACATTAAAGCGATTC ATACGAGAAGCGGTCATGTAATAAAATTCACAGAAGATGAGAGCATCTTAATTGCTGATAAGAACGGTAATGAGATACTA TTGGATACTGTTGGAGGTAACATAACTATTACAGCAAACAACACCATTGATCTAAACGCACAAAACATCAATCTTAATGC TTCTCAAAATATTACTGCTAATGCAGGAATGAATATTACAGAAAGTGCCGGAGCCGACAAAATGAGTATTGTAGGTATGA TGCTTAATACTACTGTAGGAGGTGATCATATGCTTAATGTTACAGGAAACTTCATGGAAAACATTGAAGGAAATCTTGAA TCTCATACGGCTAAAGAAAGACAGGAAGTTGGAGTTAAAGGAATTGATACAAGCAGTGAAGGAGGGATAAATAAACACTC TAAAAAAGAAATGCAAATTAACAGCGCCGAAAAATCTAAATCTTACTAA
Upstream 100 bases:
>100_bases TAGCAAAAGAATTGACTTTTGGCGACGCTAAATTCTCAAACAATTGGATTGCTTTAGATTAATTGTTTAAAAGCTAATTA AAAACCCCAAGGACATCATT
Downstream 100 bases:
>100_bases TGTATGAGCAGGGTTAGATTAGTTGGAGGTACTATAACAAAAACTACAGGCGGCGATCACAATATATATTCTGATGGTAA TATTGTGTATAATTCTGGTA
Product: Rhs element Vgr protein
Products: NA
Alternate protein names: Rhs Element Vgr Protein Family Protein; Type VI Secretion System Vgr Family Protein; Rhs Family Protein; VgrG Protein; Phage Protein D; Rhs Protein; Phosphoserine Phosphatase SerB
Number of amino acids: Translated: 602; Mature: 601
Protein sequence:
>602_residues MAHFSEQVHITIGSFTQNVVYYDLKLSQKMADHHHFSFVWQYTGKAVINPADQAKALRSYLGDEVIFTFKSLTGIRLMSK GIITELSSIDVDGSPAGLHVSGVSHSIVIDDMKKSRTFKDRSMDDIVLGIFAEGPGEFYQRDSIKSTYLKEFKNLLQYNE TSFEFLKRIAARYGQWFYFDGMRMQFGQTKSSQTKLINGASLHSFKIQANMASHKISLNGYDYKNVATFRESAPKTSSGS KDSFAAIVGYNQGTVANSDLNNGAYTANATNKDELDEMIKLQTAGSDANSVYYSGISYFPIGLGQVFTIVNQTVAHELIA IEVVHHSQVHGNYSCEFKAIPADVSAPHYTNVFVYGKAETQPAQVKDNNDPEGLGRVRVEFYGASGTAVTDWIRMVQPYS GSGKGFYFVPEIGEEVLIGFEGNNVQNPYVIGAQYNGQDSSGYADAQNNIKAIHTRSGHVIKFTEDESILIADKNGNEIL LDTVGGNITITANNTIDLNAQNINLNASQNITANAGMNITESAGADKMSIVGMMLNTTVGGDHMLNVTGNFMENIEGNLE SHTAKERQEVGVKGIDTSSEGGINKHSKKEMQINSAEKSKSY
Sequences:
>Translated_602_residues MAHFSEQVHITIGSFTQNVVYYDLKLSQKMADHHHFSFVWQYTGKAVINPADQAKALRSYLGDEVIFTFKSLTGIRLMSK GIITELSSIDVDGSPAGLHVSGVSHSIVIDDMKKSRTFKDRSMDDIVLGIFAEGPGEFYQRDSIKSTYLKEFKNLLQYNE TSFEFLKRIAARYGQWFYFDGMRMQFGQTKSSQTKLINGASLHSFKIQANMASHKISLNGYDYKNVATFRESAPKTSSGS KDSFAAIVGYNQGTVANSDLNNGAYTANATNKDELDEMIKLQTAGSDANSVYYSGISYFPIGLGQVFTIVNQTVAHELIA IEVVHHSQVHGNYSCEFKAIPADVSAPHYTNVFVYGKAETQPAQVKDNNDPEGLGRVRVEFYGASGTAVTDWIRMVQPYS GSGKGFYFVPEIGEEVLIGFEGNNVQNPYVIGAQYNGQDSSGYADAQNNIKAIHTRSGHVIKFTEDESILIADKNGNEIL LDTVGGNITITANNTIDLNAQNINLNASQNITANAGMNITESAGADKMSIVGMMLNTTVGGDHMLNVTGNFMENIEGNLE SHTAKERQEVGVKGIDTSSEGGINKHSKKEMQINSAEKSKSY >Mature_601_residues AHFSEQVHITIGSFTQNVVYYDLKLSQKMADHHHFSFVWQYTGKAVINPADQAKALRSYLGDEVIFTFKSLTGIRLMSKG IITELSSIDVDGSPAGLHVSGVSHSIVIDDMKKSRTFKDRSMDDIVLGIFAEGPGEFYQRDSIKSTYLKEFKNLLQYNET SFEFLKRIAARYGQWFYFDGMRMQFGQTKSSQTKLINGASLHSFKIQANMASHKISLNGYDYKNVATFRESAPKTSSGSK DSFAAIVGYNQGTVANSDLNNGAYTANATNKDELDEMIKLQTAGSDANSVYYSGISYFPIGLGQVFTIVNQTVAHELIAI EVVHHSQVHGNYSCEFKAIPADVSAPHYTNVFVYGKAETQPAQVKDNNDPEGLGRVRVEFYGASGTAVTDWIRMVQPYSG SGKGFYFVPEIGEEVLIGFEGNNVQNPYVIGAQYNGQDSSGYADAQNNIKAIHTRSGHVIKFTEDESILIADKNGNEILL DTVGGNITITANNTIDLNAQNINLNASQNITANAGMNITESAGADKMSIVGMMLNTTVGGDHMLNVTGNFMENIEGNLES HTAKERQEVGVKGIDTSSEGGINKHSKKEMQINSAEKSKSY
Specific function: Unknown
COG id: COG3501
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 66011; Mature: 65880
Theoretical pI: Translated: 6.11; Mature: 6.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAHFSEQVHITIGSFTQNVVYYDLKLSQKMADHHHFSFVWQYTGKAVINPADQAKALRSY CCCCCCEEEEEEECEECCEEEEEEEHHHHHHCCCCEEEEEEECCCEEECCHHHHHHHHHH LGDEVIFTFKSLTGIRLMSKGIITELSSIDVDGSPAGLHVSGVSHSIVIDDMKKSRTFKD CCCCEEEEEHHHCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEEEECCHHCCCCCC RSMDDIVLGIFAEGPGEFYQRDSIKSTYLKEFKNLLQYNETSFEFLKRIAARYGQWFYFD CCCCEEEEEEEECCCCHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEC GMRMQFGQTKSSQTKLINGASLHSFKIQANMASHKISLNGYDYKNVATFRESAPKTSSGS CEEEECCCCCCCCEEEECCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHCCCCCCCCC KDSFAAIVGYNQGTVANSDLNNGAYTANATNKDELDEMIKLQTAGSDANSVYYSGISYFP CCCEEEEEECCCCCEECCCCCCCEEECCCCCHHHHHHHHEEEECCCCCCEEEECCEEEEC IGLGQVFTIVNQTVAHELIAIEVVHHSQVHGNYSCEFKAIPADVSAPHYTNVFVYGKAET CCHHHHHHHHHHHHHHHEEEEEEEECCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCC QPAQVKDNNDPEGLGRVRVEFYGASGTAVTDWIRMVQPYSGSGKGFYFVPEIGEEVLIGF CCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCEEEEEE EGNNVQNPYVIGAQYNGQDSSGYADAQNNIKAIHTRSGHVIKFTEDESILIADKNGNEIL CCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCCEEEEECCCEEEEEECCCCEEE LDTVGGNITITANNTIDLNAQNINLNASQNITANAGMNITESAGADKMSIVGMMLNTTVG EEECCCEEEEEECCEEEEEEEEEEECCCCCEEECCCCCEECCCCCCCEEEEEEEEECCCC GDHMLNVTGNFMENIEGNLESHTAKERQEVGVKGIDTSSEGGINKHSKKEMQINSAEKSK CCEEEEECCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHEEECCCCCCC SY CC >Mature Secondary Structure AHFSEQVHITIGSFTQNVVYYDLKLSQKMADHHHFSFVWQYTGKAVINPADQAKALRSY CCCCCEEEEEEECEECCEEEEEEEHHHHHHCCCCEEEEEEECCCEEECCHHHHHHHHHH LGDEVIFTFKSLTGIRLMSKGIITELSSIDVDGSPAGLHVSGVSHSIVIDDMKKSRTFKD CCCCEEEEEHHHCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEEEECCHHCCCCCC RSMDDIVLGIFAEGPGEFYQRDSIKSTYLKEFKNLLQYNETSFEFLKRIAARYGQWFYFD CCCCEEEEEEEECCCCHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEC GMRMQFGQTKSSQTKLINGASLHSFKIQANMASHKISLNGYDYKNVATFRESAPKTSSGS CEEEECCCCCCCCEEEECCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHCCCCCCCCC KDSFAAIVGYNQGTVANSDLNNGAYTANATNKDELDEMIKLQTAGSDANSVYYSGISYFP CCCEEEEEECCCCCEECCCCCCCEEECCCCCHHHHHHHHEEEECCCCCCEEEECCEEEEC IGLGQVFTIVNQTVAHELIAIEVVHHSQVHGNYSCEFKAIPADVSAPHYTNVFVYGKAET CCHHHHHHHHHHHHHHHEEEEEEEECCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCC QPAQVKDNNDPEGLGRVRVEFYGASGTAVTDWIRMVQPYSGSGKGFYFVPEIGEEVLIGF CCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCEEEEEE EGNNVQNPYVIGAQYNGQDSSGYADAQNNIKAIHTRSGHVIKFTEDESILIADKNGNEIL CCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCCEEEEECCCEEEEEECCCCEEE LDTVGGNITITANNTIDLNAQNINLNASQNITANAGMNITESAGADKMSIVGMMLNTTVG EEECCCEEEEEECCEEEEEEEEEEECCCCCEEECCCCCEECCCCCCCEEEEEEEEECCCC GDHMLNVTGNFMENIEGNLESHTAKERQEVGVKGIDTSSEGGINKHSKKEMQINSAEKSK CCEEEEECCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHEEECCCCCCC SY CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA