| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is hisB [H]
Identifier: 146300624
GI number: 146300624
Start: 3411292
End: 3412428
Strand: Reverse
Name: hisB [H]
Synonym: Fjoh_2875
Alternate gene names: 146300624
Gene position: 3412428-3411292 (Counterclockwise)
Preceding gene: 146300625
Following gene: 146300623
Centisome position: 55.97
GC content: 36.76
Gene sequence:
>1137_bases ATGAAAAAAGTACTTTTTATCGATCGTGACGGAACGATTGTTTTAGAACCTGAAAACTACCAATTAGACAGTTTAGCTAA ACTGGAATTTTATCCAAAAGCTTTTCAATATCTGGCTAAAATTGCCGCTGAACTAGATTACGAACTGGCAATGGTAACCA ATCAGGACGGATTAGGAACGGATAGTTTTCCAGAAGATACGTTTTGGCCAACTCAGAATTTTATCCTTAAAGCCTTTGAA AACGAAGGTGTTGTTTTTGATGAAATTTTTGTAGACAGAACTTTTCCGGAAGAAAATGCGCCAACACGCAAACCAAGAAC GGGAATGCTGACAAAATATATGAATAATCCAGCATATGATTTAGAAAATTCTTTTGTTTTAGGTGATCGTTTAACTGATG TTGAATTGGCTAAAAATCTAGGCGCAAAAGCCATTTTCATGAATATGACTGATGGAATTGGAAGCAATGAAATTTCATCA AAACGAGAAGAATTAAACGATACGATTGCTTTGCAGACGATAGATTGGAAAAGAATTTACGAGTTCCTGAAATTAGAGGC ACGTTCAGCTTCGATTACTCGTAAAACCAATGAAACCGATATTTATATCAACTTAAACCTTGACGGAACTGGAAAAAGCA AAATCGACACCGGAATTGCGTTTTTTGACCACATGTTGGATCAAATCTCACGTCACGGACAAATGGACTTAGAAATTACT GTAAAAGGCGATTTAGAAGTCGATGAACACCATACAATTGAAGACACGGCAATTGCTTTAGGAGAAGTTTTCGCGAAAGC GTTAGGAAATAAACTAGGAATCGAACGTTACGGTTTCTGTCTTCCAATGGACGATTGTTTAGCACAGGCAGCAATTGACT TCGGCGGAAGAAACTGGCTGATTTGGGAAACTGAATTTAAACGCGAAATGGTTGGTAAAATGCCGACAGAAATGTTCTAT CACTTCTTTAAATCATTTACAGACGGCGCAAAAGCGAATTTAAATATCAAAGCAGAAGGAATAAACGAACATCACAAAAT TGAAGCGATCTTTAAAGCTTTCGCAAAAGCGATAAAAGTAGCCGTAAAAAGAGATACCGAAAAAATGATTTTGCCTTCTA CGAAAGGAATGCTTTAA
Upstream 100 bases:
>100_bases TTGCACGAATTAGCACAAATTAAATTAGTGAAAATTAGTGCAATTCGTGGCAAAGAAAAAATCATTTTAATCTGTGAAAT CTGTGGCAAAACAAAAAAAT
Downstream 100 bases:
>100_bases ATAAGTCGAAAGTTGAAAGTCATAAAGTCAAAAGATTCCTAAATTATGGATTTCAGAAAGCGACTTTAAGACTTTGGACT TTAGACTTTAAGACTAAAAT
Product: imidazole glycerol-phosphate dehydratase/histidinol phosphatase
Products: NA
Alternate protein names: Histidinol-phosphatase; Imidazoleglycerol-phosphate dehydratase; IGPD [H]
Number of amino acids: Translated: 378; Mature: 378
Protein sequence:
>378_residues MKKVLFIDRDGTIVLEPENYQLDSLAKLEFYPKAFQYLAKIAAELDYELAMVTNQDGLGTDSFPEDTFWPTQNFILKAFE NEGVVFDEIFVDRTFPEENAPTRKPRTGMLTKYMNNPAYDLENSFVLGDRLTDVELAKNLGAKAIFMNMTDGIGSNEISS KREELNDTIALQTIDWKRIYEFLKLEARSASITRKTNETDIYINLNLDGTGKSKIDTGIAFFDHMLDQISRHGQMDLEIT VKGDLEVDEHHTIEDTAIALGEVFAKALGNKLGIERYGFCLPMDDCLAQAAIDFGGRNWLIWETEFKREMVGKMPTEMFY HFFKSFTDGAKANLNIKAEGINEHHKIEAIFKAFAKAIKVAVKRDTEKMILPSTKGML
Sequences:
>Translated_378_residues MKKVLFIDRDGTIVLEPENYQLDSLAKLEFYPKAFQYLAKIAAELDYELAMVTNQDGLGTDSFPEDTFWPTQNFILKAFE NEGVVFDEIFVDRTFPEENAPTRKPRTGMLTKYMNNPAYDLENSFVLGDRLTDVELAKNLGAKAIFMNMTDGIGSNEISS KREELNDTIALQTIDWKRIYEFLKLEARSASITRKTNETDIYINLNLDGTGKSKIDTGIAFFDHMLDQISRHGQMDLEIT VKGDLEVDEHHTIEDTAIALGEVFAKALGNKLGIERYGFCLPMDDCLAQAAIDFGGRNWLIWETEFKREMVGKMPTEMFY HFFKSFTDGAKANLNIKAEGINEHHKIEAIFKAFAKAIKVAVKRDTEKMILPSTKGML >Mature_378_residues MKKVLFIDRDGTIVLEPENYQLDSLAKLEFYPKAFQYLAKIAAELDYELAMVTNQDGLGTDSFPEDTFWPTQNFILKAFE NEGVVFDEIFVDRTFPEENAPTRKPRTGMLTKYMNNPAYDLENSFVLGDRLTDVELAKNLGAKAIFMNMTDGIGSNEISS KREELNDTIALQTIDWKRIYEFLKLEARSASITRKTNETDIYINLNLDGTGKSKIDTGIAFFDHMLDQISRHGQMDLEIT VKGDLEVDEHHTIEDTAIALGEVFAKALGNKLGIERYGFCLPMDDCLAQAAIDFGGRNWLIWETEFKREMVGKMPTEMFY HFFKSFTDGAKANLNIKAEGINEHHKIEAIFKAFAKAIKVAVKRDTEKMILPSTKGML
Specific function: Histidine biosynthesis; sixth step. Histidine biosynthesis; eighth step. [C]
COG id: COG0131
COG function: function code E; Imidazoleglycerol-phosphate dehydratase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the imidazoleglycerol-phosphate dehydratase family [H]
Homologues:
Organism=Escherichia coli, GI87082027, Length=378, Percent_Identity=43.1216931216931, Blast_Score=318, Evalue=5e-88, Organism=Saccharomyces cerevisiae, GI6324776, Length=217, Percent_Identity=34.5622119815668, Blast_Score=134, Evalue=3e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023214 - InterPro: IPR006549 - InterPro: IPR020566 - InterPro: IPR005954 - InterPro: IPR006543 - InterPro: IPR000807 - InterPro: IPR020565 - InterPro: IPR020568 [H]
Pfam domain/function: PF00475 IGPD [H]
EC number: =3.1.3.15; =4.2.1.19 [H]
Molecular weight: Translated: 42975; Mature: 42975
Theoretical pI: Translated: 4.73; Mature: 4.73
Prosite motif: PS00954 IGP_DEHYDRATASE_1 ; PS00955 IGP_DEHYDRATASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKVLFIDRDGTIVLEPENYQLDSLAKLEFYPKAFQYLAKIAAELDYELAMVTNQDGLGT CCEEEEEECCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC DSFPEDTFWPTQNFILKAFENEGVVFDEIFVDRTFPEENAPTRKPRTGMLTKYMNNPAYD CCCCCCCCCCCHHHHHEEECCCCEEEEHEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCC LENSFVLGDRLTDVELAKNLGAKAIFMNMTDGIGSNEISSKREELNDTIALQTIDWKRIY CCCCEEECCCCCHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHCCCEEEEEECCHHHHH EFLKLEARSASITRKTNETDIYINLNLDGTGKSKIDTGIAFFDHMLDQISRHGQMDLEIT HHHHHHHCCCEEEECCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEE VKGDLEVDEHHTIEDTAIALGEVFAKALGNKLGIERYGFCLPMDDCLAQAAIDFGGRNWL EECCCEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHCCCCEEE IWETEFKREMVGKMPTEMFYHFFKSFTDGAKANLNIKAEGINEHHKIEAIFKAFAKAIKV EECHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH AVKRDTEKMILPSTKGML HHHCCCCCEECCCCCCCC >Mature Secondary Structure MKKVLFIDRDGTIVLEPENYQLDSLAKLEFYPKAFQYLAKIAAELDYELAMVTNQDGLGT CCEEEEEECCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC DSFPEDTFWPTQNFILKAFENEGVVFDEIFVDRTFPEENAPTRKPRTGMLTKYMNNPAYD CCCCCCCCCCCHHHHHEEECCCCEEEEHEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCC LENSFVLGDRLTDVELAKNLGAKAIFMNMTDGIGSNEISSKREELNDTIALQTIDWKRIY CCCCEEECCCCCHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHCCCEEEEEECCHHHHH EFLKLEARSASITRKTNETDIYINLNLDGTGKSKIDTGIAFFDHMLDQISRHGQMDLEIT HHHHHHHCCCEEEECCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEE VKGDLEVDEHHTIEDTAIALGEVFAKALGNKLGIERYGFCLPMDDCLAQAAIDFGGRNWL EECCCEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHCCCCEEE IWETEFKREMVGKMPTEMFYHFFKSFTDGAKANLNIKAEGINEHHKIEAIFKAFAKAIKV EECHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH AVKRDTEKMILPSTKGML HHHCCCCCEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA