| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146300604
Identifier: 146300604
GI number: 146300604
Start: 3385710
End: 3386105
Strand: Reverse
Name: 146300604
Synonym: Fjoh_2854
Alternate gene names: NA
Gene position: 3386105-3385710 (Counterclockwise)
Preceding gene: 146300606
Following gene: 146300602
Centisome position: 55.54
GC content: 32.07
Gene sequence:
>396_bases ATGACAGAGAAGAAAATACATCAAGGCAGAAATATAAAACGTTTCCGTGAAATGCTGGGCATTAAACAAGAAGCCCTTGC CTTTGAATTGGGTGAAGACTGGAGTCAAAAGAAAATCTCTATTTTGGAGCAAAAAGAATTGATTGAAACTGATATTTTAG CTCAGGTTGCTAAAATTCTTAAAGTTCCTGTTCAAGCTATCGAAAATTTTGATGAAGAACAAGCAATAAATATTATATCA AATAATGCTTCTTTTGATAATTGTCAACAACCTGCTTTTTTTAACAATCAACCTACATTCAACCCTATTGATAAAATGGT AGAGCTTTATGAGCGTATGTTATTGCAGCAAAAGGAAATGATTGATAAATTGGAAAAGCTGATTCAGAACAAGTAA
Upstream 100 bases:
>100_bases AACCCAGTTAAGAACAAATTGATATATAAATAAATGAAAAAATATGTTTTAATTATTTTAAGTAAAAATCCTATATTTGA CATTTACGATACATATCAAT
Downstream 100 bases:
>100_bases ACAATATACTTCATAAAAAAAGCATCACATTATGTGATGCTTTAAATTTCTCGTATTTGAAAAATTATTTTATTTTTTTC AAATAAACGGATTTTCCGTT
Product: hypothetical protein
Products: NA
Alternate protein names: Xin-Antitoxin System Antitoxin Component Xre Family; Helix-Turn-Helix Domain Protein; Helix-TurN-Helix Domain Protein; HTH_3 Family Transcriptional Regulator Protein; XRE Family Plasmid Maintenance System Antidote Protein
Number of amino acids: Translated: 131; Mature: 130
Protein sequence:
>131_residues MTEKKIHQGRNIKRFREMLGIKQEALAFELGEDWSQKKISILEQKELIETDILAQVAKILKVPVQAIENFDEEQAINIIS NNASFDNCQQPAFFNNQPTFNPIDKMVELYERMLLQQKEMIDKLEKLIQNK
Sequences:
>Translated_131_residues MTEKKIHQGRNIKRFREMLGIKQEALAFELGEDWSQKKISILEQKELIETDILAQVAKILKVPVQAIENFDEEQAINIIS NNASFDNCQQPAFFNNQPTFNPIDKMVELYERMLLQQKEMIDKLEKLIQNK >Mature_130_residues TEKKIHQGRNIKRFREMLGIKQEALAFELGEDWSQKKISILEQKELIETDILAQVAKILKVPVQAIENFDEEQAINIISN NASFDNCQQPAFFNNQPTFNPIDKMVELYERMLLQQKEMIDKLEKLIQNK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15379; Mature: 15248
Theoretical pI: Translated: 5.03; Mature: 5.03
Prosite motif: PS50943 HTH_CROC1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEKKIHQGRNIKRFREMLGIKQEALAFELGEDWSQKKISILEQKELIETDILAQVAKIL CCCHHHHCCCCHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH KVPVQAIENFDEEQAINIISNNASFDNCQQPAFFNNQPTFNPIDKMVELYERMLLQQKEM HHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH IDKLEKLIQNK HHHHHHHHCCC >Mature Secondary Structure TEKKIHQGRNIKRFREMLGIKQEALAFELGEDWSQKKISILEQKELIETDILAQVAKIL CCHHHHCCCCHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH KVPVQAIENFDEEQAINIISNNASFDNCQQPAFFNNQPTFNPIDKMVELYERMLLQQKEM HHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH IDKLEKLIQNK HHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA