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The map label for this gene is sdpR [H]

Identifier: 146300579

GI number: 146300579

Start: 3363661

End: 3363987

Strand: Reverse

Name: sdpR [H]

Synonym: Fjoh_2829

Alternate gene names: 146300579

Gene position: 3363987-3363661 (Counterclockwise)

Preceding gene: 146300581

Following gene: 146300578

Centisome position: 55.18

GC content: 37.0

Gene sequence:

>327_bases
ATGGAAATACGTAGAGATGTTTTTCAGGCAATTGCCGATCCAACCCGAAGAGCAATTTTAAACCTGGTAGCCATACAAGC
TATGACTCCCGGTACAATAGCGGAAAATTTTGATTCGTCGAGACAGACGATTTCAAAACACATTAAAATCCTGACAGAAT
GCGAATTGCTTGACCAGCGGCAAAACGGAAGGGAAATTTATTACTATATCAATGCACAAAAAATTAAGGAAGTGGCTGAT
TTTATAGAGCCGTTCCGCAAAATGTGGGATGATCGTTTTAATAAATTAGAAAGTATAATGAAGAACTACAAACCTAAAAA
AGATTAG

Upstream 100 bases:

>100_bases
AAAGTGTAATCCCCTTTTTCAAATTAATATCTAAATTTTTTTCAAAAAACTATTGCGCAGTCAAATAACTGCATTATTTT
TGCAGTCAAATAACTGCACA

Downstream 100 bases:

>100_bases
TTTATGGAACGCAAAACAAAAATCAGTGCCGAAAACGGCCAGCAGGAAATCCTGATTACAAGAGAATTTGACCTCCCTCT
TGAATTGCTTTTTAAAGCGT

Product: regulatory protein ArsR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 108; Mature: 108

Protein sequence:

>108_residues
MEIRRDVFQAIADPTRRAILNLVAIQAMTPGTIAENFDSSRQTISKHIKILTECELLDQRQNGREIYYYINAQKIKEVAD
FIEPFRKMWDDRFNKLESIMKNYKPKKD

Sequences:

>Translated_108_residues
MEIRRDVFQAIADPTRRAILNLVAIQAMTPGTIAENFDSSRQTISKHIKILTECELLDQRQNGREIYYYINAQKIKEVAD
FIEPFRKMWDDRFNKLESIMKNYKPKKD
>Mature_108_residues
MEIRRDVFQAIADPTRRAILNLVAIQAMTPGTIAENFDSSRQTISKHIKILTECELLDQRQNGREIYYYINAQKIKEVAD
FIEPFRKMWDDRFNKLESIMKNYKPKKD

Specific function: Represses the transcription of the sdpIR operon and of several other operons that probably contribute to delaying commitment to sporulation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 12825; Mature: 12825

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIRRDVFQAIADPTRRAILNLVAIQAMTPGTIAENFDSSRQTISKHIKILTECELLDQR
CCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCC
QNGREIYYYINAQKIKEVADFIEPFRKMWDDRFNKLESIMKNYKPKKD
CCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MEIRRDVFQAIADPTRRAILNLVAIQAMTPGTIAENFDSSRQTISKHIKILTECELLDQR
CCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCC
QNGREIYYYINAQKIKEVADFIEPFRKMWDDRFNKLESIMKNYKPKKD
CCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]