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The map label for this gene is araC [C]

Identifier: 146300575

GI number: 146300575

Start: 3360438

End: 3361400

Strand: Reverse

Name: araC [C]

Synonym: Fjoh_2825

Alternate gene names: 146300575

Gene position: 3361400-3360438 (Counterclockwise)

Preceding gene: 146300577

Following gene: 146300574

Centisome position: 55.13

GC content: 36.34

Gene sequence:

>963_bases
ATGAAAATTGAAGTTACAGATAAAAACGGTTCAGGAATTCTGCATAAGCTTGCTGATGCAATGGGAGCATCTATCCGCGG
GCGTTTCGTTGATATTCCCGAAAAATTAGGCGAAGGTTATATGACAGGATTTACCTGGGGCAATGAGCTGCGCATGATGA
TTCGGAATTACTATTTAAAAGAAGAAATTGTACTCGAACGCAAAAATGAAATTCCTGAGGGACAAGAAAATGTAATATTT
TTTCTAAGCGGTATTTTTGATACTTCTTTGCAGCAAAAGGAAAAAACCTCTCCGGAACAGCCCAATGTTTTTATCTGCAT
GCAGTCTGTTTCGTCTGTAGTTGCAATGCCTCAAAATACTTTTTTTAAAAGCATAACAATTTCGGCATCCAGAGAATATT
TACAGCAGCAATTTGGAGCACTGCATCATCCTGTTATTTCAAGCATCCTTACTTCTAAAGATACTTTTGTTTATGAAACC
GGAATTTCTCCTGCAATGGTCACAACAGCAAGTGAAATGATTCATCAATTGGTTCCGGAAAGTTTAGAAAATCATTATAA
TAAGCTCAAATGCGAAGAACTTTTATGTCATATTTTCGCTTTGTTATTGCAGCGGGACGAAACTCCTGCAAGCGGCATTC
ATATTAAAGACATAAAATCGCTTTATGCCATAAAATACCATTTGCAGTCCAATCTTGATAAAGCACCTGATATCGCTTCA
TTAGCCAAAGAAGCCGGAATGAGCGAGCCAAAACTTCGAAAATTATTCAAACAGACTTTTGGAAAAGGTGTTTTTGAATA
TTATCAGTTTATGAGAATGCAGGAAGCGGCAAGGCTTTTAAAGGAAAATCATCTATCTGTTTCAGAAGTTGGCTATGAGT
TAGGATTTACCAATTTAAGCCATTTTTCAAGGGTTTTTGAACAGCATATTGGTTTAAAACCGAAAAAATATTCCAGCTTA
TAA

Upstream 100 bases:

>100_bases
AGTAACATACCTATTCTTTTTATTGTTTAAAATTTCAATTACAAAATTATTAGTATCTTTATAGGTAAAATATCCTATTT
TGATATTAAAATAGTCGTAA

Downstream 100 bases:

>100_bases
CCTAAGTGATTAATTTTGTATAAGATATTTAGAAAATGAGTTTATTAATTCAATCCGCTTTACCAGATTCATCTATTTCG
CATTTTGTACACAGCTTTTG

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; AraC Family Transcription Regulator; Transcriptional Regulatory Protein; Transcriptional Regulator AraC Family Protein; Regulatory Protein PchR; Transcription Regulator Protein; AraC Type Helix-Turn-Helix- Domain-Containing Protein; Transcriptional Regulator YbtA; HTH Domain-Containing Protein; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator Arac Family; Regulatory Helix-Turn-Helix Protein AraC Family; Regulatory Protein PcrR; Regulatory Protein; AraC/XylS Family Transcription Factor; DJ-1/PfpI Family Protein

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MKIEVTDKNGSGILHKLADAMGASIRGRFVDIPEKLGEGYMTGFTWGNELRMMIRNYYLKEEIVLERKNEIPEGQENVIF
FLSGIFDTSLQQKEKTSPEQPNVFICMQSVSSVVAMPQNTFFKSITISASREYLQQQFGALHHPVISSILTSKDTFVYET
GISPAMVTTASEMIHQLVPESLENHYNKLKCEELLCHIFALLLQRDETPASGIHIKDIKSLYAIKYHLQSNLDKAPDIAS
LAKEAGMSEPKLRKLFKQTFGKGVFEYYQFMRMQEAARLLKENHLSVSEVGYELGFTNLSHFSRVFEQHIGLKPKKYSSL

Sequences:

>Translated_320_residues
MKIEVTDKNGSGILHKLADAMGASIRGRFVDIPEKLGEGYMTGFTWGNELRMMIRNYYLKEEIVLERKNEIPEGQENVIF
FLSGIFDTSLQQKEKTSPEQPNVFICMQSVSSVVAMPQNTFFKSITISASREYLQQQFGALHHPVISSILTSKDTFVYET
GISPAMVTTASEMIHQLVPESLENHYNKLKCEELLCHIFALLLQRDETPASGIHIKDIKSLYAIKYHLQSNLDKAPDIAS
LAKEAGMSEPKLRKLFKQTFGKGVFEYYQFMRMQEAARLLKENHLSVSEVGYELGFTNLSHFSRVFEQHIGLKPKKYSSL
>Mature_320_residues
MKIEVTDKNGSGILHKLADAMGASIRGRFVDIPEKLGEGYMTGFTWGNELRMMIRNYYLKEEIVLERKNEIPEGQENVIF
FLSGIFDTSLQQKEKTSPEQPNVFICMQSVSSVVAMPQNTFFKSITISASREYLQQQFGALHHPVISSILTSKDTFVYET
GISPAMVTTASEMIHQLVPESLENHYNKLKCEELLCHIFALLLQRDETPASGIHIKDIKSLYAIKYHLQSNLDKAPDIAS
LAKEAGMSEPKLRKLFKQTFGKGVFEYYQFMRMQEAARLLKENHLSVSEVGYELGFTNLSHFSRVFEQHIGLKPKKYSSL

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36419; Mature: 36419

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIEVTDKNGSGILHKLADAMGASIRGRFVDIPEKLGEGYMTGFTWGNELRMMIRNYYLK
CEEEEECCCCCHHHHHHHHHHCCHHCCCEECCHHHHCCCCEECCCCHHHHHHHHHHHHHH
EEIVLERKNEIPEGQENVIFFLSGIFDTSLQQKEKTSPEQPNVFICMQSVSSVVAMPQNT
HHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHCCCHH
FFKSITISASREYLQQQFGALHHPVISSILTSKDTFVYETGISPAMVTTASEMIHQLVPE
HHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHH
SLENHYNKLKCEELLCHIFALLLQRDETPASGIHIKDIKSLYAIKYHLQSNLDKAPDIAS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHH
LAKEAGMSEPKLRKLFKQTFGKGVFEYYQFMRMQEAARLLKENHLSVSEVGYELGFTNLS
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHH
HFSRVFEQHIGLKPKKYSSL
HHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MKIEVTDKNGSGILHKLADAMGASIRGRFVDIPEKLGEGYMTGFTWGNELRMMIRNYYLK
CEEEEECCCCCHHHHHHHHHHCCHHCCCEECCHHHHCCCCEECCCCHHHHHHHHHHHHHH
EEIVLERKNEIPEGQENVIFFLSGIFDTSLQQKEKTSPEQPNVFICMQSVSSVVAMPQNT
HHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHCCCHH
FFKSITISASREYLQQQFGALHHPVISSILTSKDTFVYETGISPAMVTTASEMIHQLVPE
HHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHH
SLENHYNKLKCEELLCHIFALLLQRDETPASGIHIKDIKSLYAIKYHLQSNLDKAPDIAS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHH
LAKEAGMSEPKLRKLFKQTFGKGVFEYYQFMRMQEAARLLKENHLSVSEVGYELGFTNLS
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHH
HFSRVFEQHIGLKPKKYSSL
HHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA