Click here to switch to the map view.

The map label for this gene is yiaD [H]

Identifier: 146300540

GI number: 146300540

Start: 3323171

End: 3324082

Strand: Reverse

Name: yiaD [H]

Synonym: Fjoh_2790

Alternate gene names: 146300540

Gene position: 3324082-3323171 (Counterclockwise)

Preceding gene: 146300543

Following gene: 146300539

Centisome position: 54.52

GC content: 33.0

Gene sequence:

>912_bases
ATGTCTAAAAAAGCACTTTACCTATTAGGCATTGCTCTCACCATAATTTTAGGTACTTTTTTGTACATAAAGTTTTGCTG
CAATTGCGCTGTGACCGAACCGAAGGCTGGTCCCGAAAAAACACCTCCAACGGTAATTAAGAACGAAAATTTTGTCCCTT
TTGTACTGAATGGCTCCGGATTTGAATATCAAACAAATGATAATTTTAAATTCTTAAAAAATAATTCTGCCCTGATTCAG
CCAATAAGTGACTCAATTTCAATTGGAATTGAAAATCTTAAAACTTTTTTAGTTTCAAATCCTAAACAAAAAGTAACAAT
TACAGGTTACGCAACATCTGATGAAACGAATACTACCAAATTTGAAAATCTTGGTCTGGCAAGGGCAAATGATGTTAAGA
ATTACTTTGTTTCCAAAGGGTTAGCATCTTCTCAATTAGATACTGAAGGAAAAATCATAAACAGCTGGGAAACAAATGCT
GATACATTAATTGGACCTGTTGAATACAAATTTGAGACTGCCGATACAACTTCTGCGGTTACTGATGAATGGTCAGCTTT
AAAAGATAAAATTAATGCAGATCCGCTTACGCTTCATTTCAATACTAATAAATCCAGTTTTAATTTAACTAATGATGAAA
AACAGAAAGTATCTGACATTTCTAAATATTTAGAAAATGTAAAAAATGCTTCTGTTTTAATTGTCGGACACAGCGATAAT
GTGGGAAATAGAGAATTAAATATTGTTCTCGCACAAAAACGAGCTGATTTTACTAAAAACTATTTAATTAAAAACGGTAT
TGAAGCTTCGAGAATCGAAACTGAATCAAAAGGTCCTGACGAACCAGCGGGTGATAATACAACTGCCGAAGGAAAAGCAA
GTAATCGAAGAACCGTAATTACAATCAAATAA

Upstream 100 bases:

>100_bases
AAACTTTTACAAGTGTAAAATGCAACCAATTTGCTTGATTATTAACATGTTGCATGTTTTAATTTTCGTTAAATTTGGTT
GAATCTTAATTTATTTACCT

Downstream 100 bases:

>100_bases
TTAAAAATATACTATTATGAATTTACCATGTATCTTAATACCAATTATAGTGGGTTTAATCTGTGGGATTTTAGGTTACC
TGCTTGGAAAATTGAATTCT

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MSKKALYLLGIALTIILGTFLYIKFCCNCAVTEPKAGPEKTPPTVIKNENFVPFVLNGSGFEYQTNDNFKFLKNNSALIQ
PISDSISIGIENLKTFLVSNPKQKVTITGYATSDETNTTKFENLGLARANDVKNYFVSKGLASSQLDTEGKIINSWETNA
DTLIGPVEYKFETADTTSAVTDEWSALKDKINADPLTLHFNTNKSSFNLTNDEKQKVSDISKYLENVKNASVLIVGHSDN
VGNRELNIVLAQKRADFTKNYLIKNGIEASRIETESKGPDEPAGDNTTAEGKASNRRTVITIK

Sequences:

>Translated_303_residues
MSKKALYLLGIALTIILGTFLYIKFCCNCAVTEPKAGPEKTPPTVIKNENFVPFVLNGSGFEYQTNDNFKFLKNNSALIQ
PISDSISIGIENLKTFLVSNPKQKVTITGYATSDETNTTKFENLGLARANDVKNYFVSKGLASSQLDTEGKIINSWETNA
DTLIGPVEYKFETADTTSAVTDEWSALKDKINADPLTLHFNTNKSSFNLTNDEKQKVSDISKYLENVKNASVLIVGHSDN
VGNRELNIVLAQKRADFTKNYLIKNGIEASRIETESKGPDEPAGDNTTAEGKASNRRTVITIK
>Mature_302_residues
SKKALYLLGIALTIILGTFLYIKFCCNCAVTEPKAGPEKTPPTVIKNENFVPFVLNGSGFEYQTNDNFKFLKNNSALIQP
ISDSISIGIENLKTFLVSNPKQKVTITGYATSDETNTTKFENLGLARANDVKNYFVSKGLASSQLDTEGKIINSWETNAD
TLIGPVEYKFETADTTSAVTDEWSALKDKINADPLTLHFNTNKSSFNLTNDEKQKVSDISKYLENVKNASVLIVGHSDNV
GNRELNIVLAQKRADFTKNYLIKNGIEASRIETESKGPDEPAGDNTTAEGKASNRRTVITIK

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=100, Percent_Identity=38, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 33324; Mature: 33193

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKALYLLGIALTIILGTFLYIKFCCNCAVTEPKAGPEKTPPTVIKNENFVPFVLNGSG
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCEEEEEECCCC
FEYQTNDNFKFLKNNSALIQPISDSISIGIENLKTFLVSNPKQKVTITGYATSDETNTTK
EEEEECCCEEEEECCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCC
FENLGLARANDVKNYFVSKGLASSQLDTEGKIINSWETNADTLIGPVEYKFETADTTSAV
HHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCEEECCEEEEEECCCCCHHH
TDEWSALKDKINADPLTLHFNTNKSSFNLTNDEKQKVSDISKYLENVKNASVLIVGHSDN
HHHHHHHHHHCCCCCEEEEEECCCCEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCC
VGNRELNIVLAQKRADFTKNYLIKNGIEASRIETESKGPDEPAGDNTTAEGKASNRRTVI
CCCEEEEEEEECCCCCHHHHHHHHCCCCHHEEECCCCCCCCCCCCCCCCCCCCCCCEEEE
TIK
EEC
>Mature Secondary Structure 
SKKALYLLGIALTIILGTFLYIKFCCNCAVTEPKAGPEKTPPTVIKNENFVPFVLNGSG
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCEEEEEECCCC
FEYQTNDNFKFLKNNSALIQPISDSISIGIENLKTFLVSNPKQKVTITGYATSDETNTTK
EEEEECCCEEEEECCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCC
FENLGLARANDVKNYFVSKGLASSQLDTEGKIINSWETNADTLIGPVEYKFETADTTSAV
HHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCEEECCEEEEEECCCCCHHH
TDEWSALKDKINADPLTLHFNTNKSSFNLTNDEKQKVSDISKYLENVKNASVLIVGHSDN
HHHHHHHHHHCCCCCEEEEEECCCCEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCC
VGNRELNIVLAQKRADFTKNYLIKNGIEASRIETESKGPDEPAGDNTTAEGKASNRRTVI
CCCEEEEEEEECCCCCHHHHHHHHCCCCHHEEECCCCCCCCCCCCCCCCCCCCCCCEEEE
TIK
EEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]