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The map label for this gene is carQ [H]

Identifier: 146300191

GI number: 146300191

Start: 2921477

End: 2922061

Strand: Direct

Name: carQ [H]

Synonym: Fjoh_2436

Alternate gene names: 146300191

Gene position: 2921477-2922061 (Clockwise)

Preceding gene: 146300190

Following gene: 146300192

Centisome position: 47.92

GC content: 32.82

Gene sequence:

>585_bases
ATGGCTGATCTGCATACTCCAGACGCTCTATTAGTAAAAAATTATGTTGAAGGCAGTGAAGCTGCTCTTGCAACATTAAT
TAAAAGGCACGAATCTAAGATATATGGTTTTATATATTCTAAGATTGCTGATAGAGACATTTCAAATGATATTTTCCAAG
ACACTTTTATTAAAGTGATAAAAACATTAAAAAGCAATTCTTATAACGAAGAAGGGAAATTTCTTCCGTGGGTCATGCGT
ATTTCACACAATTTAATTGTGGATCACTTTCGCAAAACCAAAAAGATGCCAATGTACAGAGAAACCGAAGAGTTTTCAAT
ATTCTCAATTATGTCTGATGATTCGCTAAACATCGAAAGCAGAATGATTGTCGATCAGGTTGAGGTGGACTTAAAAAGAC
TAATTGAAGAACTTCCTGAAGACCAAAAAGAAGTTTTGGTAATGAGAATGTATCAGGACATGAGCTTTAAAGAAATATCA
GAATTAACAGACGTAAGTATCAATACAGCATTAGGAAGAATGCGTTATGCGTTGATGAATTTGAGAAAAATTATCGACAA
ACATCAAATTATTTTGACCAACTAA

Upstream 100 bases:

>100_bases
TTGGTCACAATATTAACATAACTCAAAAAAGAGATCCGCCTATAAAATAAAATTACTTTTTAGAATTACTCCAAATTATT
AAAACTAAAAAAGTAGTATT

Downstream 100 bases:

>100_bases
TACTATTTTGAAAATTAGCCCGTTATACTATAATAAAACACTAACATAGTATGGCGAAAATTTACTCAAAAAAAGCATTA
GCTTCTAAAGATTTAAAACC

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MADLHTPDALLVKNYVEGSEAALATLIKRHESKIYGFIYSKIADRDISNDIFQDTFIKVIKTLKSNSYNEEGKFLPWVMR
ISHNLIVDHFRKTKKMPMYRETEEFSIFSIMSDDSLNIESRMIVDQVEVDLKRLIEELPEDQKEVLVMRMYQDMSFKEIS
ELTDVSINTALGRMRYALMNLRKIIDKHQIILTN

Sequences:

>Translated_194_residues
MADLHTPDALLVKNYVEGSEAALATLIKRHESKIYGFIYSKIADRDISNDIFQDTFIKVIKTLKSNSYNEEGKFLPWVMR
ISHNLIVDHFRKTKKMPMYRETEEFSIFSIMSDDSLNIESRMIVDQVEVDLKRLIEELPEDQKEVLVMRMYQDMSFKEIS
ELTDVSINTALGRMRYALMNLRKIIDKHQIILTN
>Mature_193_residues
ADLHTPDALLVKNYVEGSEAALATLIKRHESKIYGFIYSKIADRDISNDIFQDTFIKVIKTLKSNSYNEEGKFLPWVMRI
SHNLIVDHFRKTKKMPMYRETEEFSIFSIMSDDSLNIESRMIVDQVEVDLKRLIEELPEDQKEVLVMRMYQDMSFKEISE
LTDVSINTALGRMRYALMNLRKIIDKHQIILTN

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes for the light induced biosynthesis of carotenoids [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 22787; Mature: 22656

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADLHTPDALLVKNYVEGSEAALATLIKRHESKIYGFIYSKIADRDISNDIFQDTFIKVI
CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
KTLKSNSYNEEGKFLPWVMRISHNLIVDHFRKTKKMPMYRETEEFSIFSIMSDDSLNIES
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHH
RMIVDQVEVDLKRLIEELPEDQKEVLVMRMYQDMSFKEISELTDVSINTALGRMRYALMN
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LRKIIDKHQIILTN
HHHHHCCCCEEECC
>Mature Secondary Structure 
ADLHTPDALLVKNYVEGSEAALATLIKRHESKIYGFIYSKIADRDISNDIFQDTFIKVI
CCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
KTLKSNSYNEEGKFLPWVMRISHNLIVDHFRKTKKMPMYRETEEFSIFSIMSDDSLNIES
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHH
RMIVDQVEVDLKRLIEELPEDQKEVLVMRMYQDMSFKEISELTDVSINTALGRMRYALMN
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LRKIIDKHQIILTN
HHHHHCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934835; 8052622 [H]