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The map label for this gene is yvrC [H]

Identifier: 146300078

GI number: 146300078

Start: 2791240

End: 2792040

Strand: Direct

Name: yvrC [H]

Synonym: Fjoh_2323

Alternate gene names: 146300078

Gene position: 2791240-2792040 (Clockwise)

Preceding gene: 146300077

Following gene: 146300087

Centisome position: 45.78

GC content: 33.08

Gene sequence:

>801_bases
ATGAAACAACTAAAAGACCAGCTTGGTGCTTTACATTCTTTTGAAACTGCTCCAAAACGAATTATTTCGCTTGTACCTTC
TCAAACCGAATTATTGTATGATTTAGGCTTAGAAGAGAAAATCATCGGAATTACAAAGTTTTGCGTTCATCCGTTTCATT
TTAAATCTACCAAAAAGATTGTAGGCGGAACGAAGAAAATTCATTTCGAAAAAATAAAACTTCTTGAACCGGATATTATT
ATTTGCAATAAAGAAGAAAACACAGAAGAAATTGTAAACCAATTAAAGGAAATTTGTCCGGTTTGGGTTACAAATATTAT
TTCTATAGAAGATAATTTTCAGATGATTTCAGATTTTGGTCAGTTGTTCAATTGCAGAACCGAAGCGCAGAAATGGAATG
ATAAACTGACTTTCGCCTTGAGCGATTTCAAAAAATACATTCAAGATATTGAAATCAAAAAGGCAGCTTATTTTATTTGG
AAAGATCCGTACATGGTTGCAGGAAACGATACTTATATAAATGAATTATTAAAGCTGAATCATTTTAAAAATATCTACGA
AGACAAAGGACGTTATCCTGAAATAGAACTCAAAAAAATGCGCTTAGAAGGCGATCCGGATATTGTTTTTCTTTCTTCAG
AACCGTACCCTTTTAAAGAAGAAGATGCTTTTGAAATAGGAAGATTTACGCATCACGCCAAAACCATTTTCGTCGACGGA
GAAATGTTCTCTTGGCACGGCAGCCGATTGTTAAAGGCTTTCTCGTATTTTAAATTACTTCACGAAAGGTTGAAAAATTA
A

Upstream 100 bases:

>100_bases
CGCAAAGTTCGCTAAGGTTTTTCGCAAGGTTCGCAAAGAAAAACTTTGCGTTCATCGCGTAAATCTTTGCGAACTTTGCG
GTTAAAAAAAAATCTAAATA

Downstream 100 bases:

>100_bases
TTAAATGAATTTCTAAATTCTAAAGGTGAAAGGTCGGTTTTACTTTTGAAAAGTTTATTAAAAGATTGCGGATATTCGAA
ACCTAATTTATAAGCAGTTT

Product: periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MKQLKDQLGALHSFETAPKRIISLVPSQTELLYDLGLEEKIIGITKFCVHPFHFKSTKKIVGGTKKIHFEKIKLLEPDII
ICNKEENTEEIVNQLKEICPVWVTNIISIEDNFQMISDFGQLFNCRTEAQKWNDKLTFALSDFKKYIQDIEIKKAAYFIW
KDPYMVAGNDTYINELLKLNHFKNIYEDKGRYPEIELKKMRLEGDPDIVFLSSEPYPFKEEDAFEIGRFTHHAKTIFVDG
EMFSWHGSRLLKAFSYFKLLHERLKN

Sequences:

>Translated_266_residues
MKQLKDQLGALHSFETAPKRIISLVPSQTELLYDLGLEEKIIGITKFCVHPFHFKSTKKIVGGTKKIHFEKIKLLEPDII
ICNKEENTEEIVNQLKEICPVWVTNIISIEDNFQMISDFGQLFNCRTEAQKWNDKLTFALSDFKKYIQDIEIKKAAYFIW
KDPYMVAGNDTYINELLKLNHFKNIYEDKGRYPEIELKKMRLEGDPDIVFLSSEPYPFKEEDAFEIGRFTHHAKTIFVDG
EMFSWHGSRLLKAFSYFKLLHERLKN
>Mature_266_residues
MKQLKDQLGALHSFETAPKRIISLVPSQTELLYDLGLEEKIIGITKFCVHPFHFKSTKKIVGGTKKIHFEKIKLLEPDII
ICNKEENTEEIVNQLKEICPVWVTNIISIEDNFQMISDFGQLFNCRTEAQKWNDKLTFALSDFKKYIQDIEIKKAAYFIW
KDPYMVAGNDTYINELLKLNHFKNIYEDKGRYPEIELKKMRLEGDPDIVFLSSEPYPFKEEDAFEIGRFTHHAKTIFVDG
EMFSWHGSRLLKAFSYFKLLHERLKN

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 31295; Mature: 31295

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQLKDQLGALHSFETAPKRIISLVPSQTELLYDLGLEEKIIGITKFCVHPFHFKSTKKI
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHH
VGGTKKIHFEKIKLLEPDIIICNKEENTEEIVNQLKEICPVWVTNIISIEDNFQMISDFG
HCCCCEEEHHHEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHH
QLFNCRTEAQKWNDKLTFALSDFKKYIQDIEIKKAAYFIWKDPYMVAGNDTYINELLKLN
HHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHEEEEECCCEEEECCHHHHHHHHHHH
HFKNIYEDKGRYPEIELKKMRLEGDPDIVFLSSEPYPFKEEDAFEIGRFTHHAKTIFVDG
HHHHHHHHCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHHHCCEEEEECC
EMFSWHGSRLLKAFSYFKLLHERLKN
CEECHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKQLKDQLGALHSFETAPKRIISLVPSQTELLYDLGLEEKIIGITKFCVHPFHFKSTKKI
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHH
VGGTKKIHFEKIKLLEPDIIICNKEENTEEIVNQLKEICPVWVTNIISIEDNFQMISDFG
HCCCCEEEHHHEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHH
QLFNCRTEAQKWNDKLTFALSDFKKYIQDIEIKKAAYFIWKDPYMVAGNDTYINELLKLN
HHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHEEEEECCCEEEECCHHHHHHHHHHH
HFKNIYEDKGRYPEIELKKMRLEGDPDIVFLSSEPYPFKEEDAFEIGRFTHHAKTIFVDG
HHHHHHHHCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHHHCCEEEEECC
EMFSWHGSRLLKAFSYFKLLHERLKN
CEECHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]