| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is fct [H]
Identifier: 146300037
GI number: 146300037
Start: 2753640
End: 2756069
Strand: Reverse
Name: fct [H]
Synonym: Fjoh_2282
Alternate gene names: 146300037
Gene position: 2756069-2753640 (Counterclockwise)
Preceding gene: 146300038
Following gene: 146300036
Centisome position: 45.2
GC content: 34.61
Gene sequence:
>2430_bases ATGAATTATTTTAACCGCAGCATGAAGCGTTTTATGTACTTAACAGCACTGCTTTTTATTTTTACAAGCACTGTAAACGC TCAACAGACTGACGGAAAAATTAAAGGAAACATTACAACCTCTGATGGCGAACCTGCAATTGGCGTAAATATCATTCTAA AAAACTCAAAATACGGAACTGTTTCTGAAGAAGATGGTTCTTTTGAATTCAACCGAGTAAAACCAAATACTTATACTGTT CAGGTTTCATTATCAGGTTACGAAACTCTGGAACAAGATGTTACTGTTTCTGCAAGCGAAACATCGTCATTAAACTTACA GCTGAAAGTTTCAAATAAACAGTTAAAAGAAATTATTGTTACCAATTCCAGAGGCAAAGCATTTCCAAAACAAAGCAGCT TTGTATCAAAAATGCCTCTAAAAAACGTTGAAAATCCTCAGGTTTACAATATTGTTTCATCTGAATTAATGAAAGAACAG GTAATTACAAATTATGATGATGCTTTAAAAAATGTTCCGGGAATTCAAAAATTATGGCAGTCTACAGGACGTGGCGGTGA TGGAGGTTCATTTTATTCATTACGTGGTTTTGAAGTTCAGGCCAATGTTGTAAACGGACTGCCTGGATTAACAAGAGGAA GTTTAGATCCGGCAAATATTGAACGTATCGAAGTCATCAAAGGACCATCTGGAACTTTATTTGGAAGCAGTTTAGTAAGC TACGGCGGTCTTATTAATACTGTTACTAAAAAACCATACAGCGGTTTTGGCGGTGAAGTTTCATATATAGCAGGAAGCTT TGGCTTAAACAGAGTTACTGCAGATGTTAATACACCGCTTGACGATAATGATAATGCAGCTTTTAGAATTAATGCGGCTT ACCAGACAGAAAACAGTTTTCAGGACGCTGGGTATAGAACTTCAATTTTTGTTGCTCCTTCCCTTTCTTATAAAGTAAAT GAGAAATTGTCTTTCTTGATTAATACTGAATTTATGGCTGAAGAAAAAGCAGCATCACCTATATTGTTTTTAGGCCAGTA CTCAAAACTTCAGTATGCTGATTTAAATGATTTAAATTACAATACAAAATTATCTTTTTACAGCAACGATTTACCAATGA AAAATCCGAGATTTAATCTGCAGGCTCAGATGAATTACAAGATTTCTGACCAATGGACTTCGCAGACTATTCTTTCAAGA ACTTCAACTAAATCAAAAGGATATTACTCTTACATGTCTGACAATGAAGACGGGAATAGAGATTTTGCTTTCTGGATCAC AAAAGAAAATTCTCAAACTGCAACAACTGATATCCAGCAGAATTTTATTGGAGATTTCAAAATTGGAAAAATGAGAAATC GTCTTGTGGCCGGTTTAGATTATTTTGAAAGAAATTTAATGTTTGGAGGTTCAGGTTATGCACACCTTTATAACGTTACA CCTCAGGGTGAAGTAAGACAGCTGGATCCAGCAAATTCTTACAATTTAAGCCAGACATCAGTAGATAAATTATTAGCTTC TGCACCGGGACCGGATTATAATTCCAAAGATGCAGCTTACAGCGCTTATGTTTCAGATGTTTTAAACATTACGCCTGCTT TGTTAGTAATGGCGAGTTTAAGAGTAGATTATTTTGATAATGAAGGAAATATCAAAAAAGATACAGATAATTATAATCAA ACAGCACTTTCTCCAAAATTTGGAGTAGTTTATCAGCCAATTCAGGATCAATTATCTGTTTTTGCAAATTACATGAATGG TTTTAGAAATATTGCACCAGGATTGGTTTATGACGGAAGCGGAAATGTAATTGGAACAAAAACTTTTGAACCAGAACATG CTGATCAATTAGAAGCTGGTATTAAAGCTGATTTATTTTCAGATAAAGTAACTGCTGCCGCTAGTTATTATGATATTAAT GTTGCTAATTTAGTTACCAGCAATCCAATGTATAGTTCACAAGGCGGTGAAGCAAGAAGTCAGGGATTTGAATTTGATTT GAATGCTGCAGTATCAAAAAATTTCAGCATTATTGCCGGATACAGCTACAATCAAAGTAAAATTACCAAAGGAGACATAA ACAACGTTTGGTTAGATGAAGGAAAAAGACCTTTCTGGGCAGGGCCAAAAAACCTGGTAAATCTTTGGGCTACTTATAAA TTTGATGAAGGTGCATTAGAAAACTTCGGACTTGGATTTGGTGGAAATTATGCCAGTGATAATGCTGTTTTAGACAGTGA TGTTACAGGAAAATTTGTTCTTCCTGCTTACACTGTTATCAACGGATCTGTTTTCTATAACTCAAATAAATTCCGCGTAA GCTTAAATGTAAATAATATTACCAATAAAGATTACTTTAACGGAGGATGGTCTACAGTAAATCCGCAGAAACCAAGAAAC GTTGCTGCTAGTTTTACTTATAAATTCTAA
Upstream 100 bases:
>100_bases AAGGGTTCACAGTATTGTTAAAAAAATTATAATTTCTACATTTGCGGTGTTTTTACCAATCTTACACATCCCCCGTAATC CACTTAAAAAGAAAAAAATC
Downstream 100 bases:
>100_bases ATAAGCTTAAAAATTTTAAAAGCCCCAAACCATATAATTATATGGTTTGGGGCTTTTTTTATTGTTTTATTTTTAATTAT TCTAAATAAGACGTATGTTT
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 809; Mature: 809
Protein sequence:
>809_residues MNYFNRSMKRFMYLTALLFIFTSTVNAQQTDGKIKGNITTSDGEPAIGVNIILKNSKYGTVSEEDGSFEFNRVKPNTYTV QVSLSGYETLEQDVTVSASETSSLNLQLKVSNKQLKEIIVTNSRGKAFPKQSSFVSKMPLKNVENPQVYNIVSSELMKEQ VITNYDDALKNVPGIQKLWQSTGRGGDGGSFYSLRGFEVQANVVNGLPGLTRGSLDPANIERIEVIKGPSGTLFGSSLVS YGGLINTVTKKPYSGFGGEVSYIAGSFGLNRVTADVNTPLDDNDNAAFRINAAYQTENSFQDAGYRTSIFVAPSLSYKVN EKLSFLINTEFMAEEKAASPILFLGQYSKLQYADLNDLNYNTKLSFYSNDLPMKNPRFNLQAQMNYKISDQWTSQTILSR TSTKSKGYYSYMSDNEDGNRDFAFWITKENSQTATTDIQQNFIGDFKIGKMRNRLVAGLDYFERNLMFGGSGYAHLYNVT PQGEVRQLDPANSYNLSQTSVDKLLASAPGPDYNSKDAAYSAYVSDVLNITPALLVMASLRVDYFDNEGNIKKDTDNYNQ TALSPKFGVVYQPIQDQLSVFANYMNGFRNIAPGLVYDGSGNVIGTKTFEPEHADQLEAGIKADLFSDKVTAAASYYDIN VANLVTSNPMYSSQGGEARSQGFEFDLNAAVSKNFSIIAGYSYNQSKITKGDINNVWLDEGKRPFWAGPKNLVNLWATYK FDEGALENFGLGFGGNYASDNAVLDSDVTGKFVLPAYTVINGSVFYNSNKFRVSLNVNNITNKDYFNGGWSTVNPQKPRN VAASFTYKF
Sequences:
>Translated_809_residues MNYFNRSMKRFMYLTALLFIFTSTVNAQQTDGKIKGNITTSDGEPAIGVNIILKNSKYGTVSEEDGSFEFNRVKPNTYTV QVSLSGYETLEQDVTVSASETSSLNLQLKVSNKQLKEIIVTNSRGKAFPKQSSFVSKMPLKNVENPQVYNIVSSELMKEQ VITNYDDALKNVPGIQKLWQSTGRGGDGGSFYSLRGFEVQANVVNGLPGLTRGSLDPANIERIEVIKGPSGTLFGSSLVS YGGLINTVTKKPYSGFGGEVSYIAGSFGLNRVTADVNTPLDDNDNAAFRINAAYQTENSFQDAGYRTSIFVAPSLSYKVN EKLSFLINTEFMAEEKAASPILFLGQYSKLQYADLNDLNYNTKLSFYSNDLPMKNPRFNLQAQMNYKISDQWTSQTILSR TSTKSKGYYSYMSDNEDGNRDFAFWITKENSQTATTDIQQNFIGDFKIGKMRNRLVAGLDYFERNLMFGGSGYAHLYNVT PQGEVRQLDPANSYNLSQTSVDKLLASAPGPDYNSKDAAYSAYVSDVLNITPALLVMASLRVDYFDNEGNIKKDTDNYNQ TALSPKFGVVYQPIQDQLSVFANYMNGFRNIAPGLVYDGSGNVIGTKTFEPEHADQLEAGIKADLFSDKVTAAASYYDIN VANLVTSNPMYSSQGGEARSQGFEFDLNAAVSKNFSIIAGYSYNQSKITKGDINNVWLDEGKRPFWAGPKNLVNLWATYK FDEGALENFGLGFGGNYASDNAVLDSDVTGKFVLPAYTVINGSVFYNSNKFRVSLNVNNITNKDYFNGGWSTVNPQKPRN VAASFTYKF >Mature_809_residues MNYFNRSMKRFMYLTALLFIFTSTVNAQQTDGKIKGNITTSDGEPAIGVNIILKNSKYGTVSEEDGSFEFNRVKPNTYTV QVSLSGYETLEQDVTVSASETSSLNLQLKVSNKQLKEIIVTNSRGKAFPKQSSFVSKMPLKNVENPQVYNIVSSELMKEQ VITNYDDALKNVPGIQKLWQSTGRGGDGGSFYSLRGFEVQANVVNGLPGLTRGSLDPANIERIEVIKGPSGTLFGSSLVS YGGLINTVTKKPYSGFGGEVSYIAGSFGLNRVTADVNTPLDDNDNAAFRINAAYQTENSFQDAGYRTSIFVAPSLSYKVN EKLSFLINTEFMAEEKAASPILFLGQYSKLQYADLNDLNYNTKLSFYSNDLPMKNPRFNLQAQMNYKISDQWTSQTILSR TSTKSKGYYSYMSDNEDGNRDFAFWITKENSQTATTDIQQNFIGDFKIGKMRNRLVAGLDYFERNLMFGGSGYAHLYNVT PQGEVRQLDPANSYNLSQTSVDKLLASAPGPDYNSKDAAYSAYVSDVLNITPALLVMASLRVDYFDNEGNIKKDTDNYNQ TALSPKFGVVYQPIQDQLSVFANYMNGFRNIAPGLVYDGSGNVIGTKTFEPEHADQLEAGIKADLFSDKVTAAASYYDIN VANLVTSNPMYSSQGGEARSQGFEFDLNAAVSKNFSIIAGYSYNQSKITKGDINNVWLDEGKRPFWAGPKNLVNLWATYK FDEGALENFGLGFGGNYASDNAVLDSDVTGKFVLPAYTVINGSVFYNSNKFRVSLNVNNITNKDYFNGGWSTVNPQKPRN VAASFTYKF
Specific function: Involved in the initial step of iron uptake by binding chrysobactin, an iron chelatin siderophore that allows the bacteria to extract iron from the environment [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=729, Percent_Identity=24.2798353909465, Blast_Score=127, Evalue=2e-30, Organism=Escherichia coli, GI1787024, Length=740, Percent_Identity=22.972972972973, Blast_Score=112, Evalue=7e-26, Organism=Escherichia coli, GI1787344, Length=175, Percent_Identity=31.4285714285714, Blast_Score=74, Evalue=5e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 89457; Mature: 89457
Theoretical pI: Translated: 5.38; Mature: 5.38
Prosite motif: PS01156 TONB_DEPENDENT_REC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNYFNRSMKRFMYLTALLFIFTSTVNAQQTDGKIKGNITTSDGEPAIGVNIILKNSKYGT CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCC VSEEDGSFEFNRVKPNTYTVQVSLSGYETLEQDVTVSASETSSLNLQLKVSNKQLKEIIV CCCCCCCEEEEEECCCEEEEEEEECCCHHHHCCEEEEECCCCEEEEEEEECCCCEEEEEE TNSRGKAFPKQSSFVSKMPLKNVENPQVYNIVSSELMKEQVITNYDDALKNVPGIQKLWQ ECCCCCCCCCHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHH STGRGGDGGSFYSLRGFEVQANVVNGLPGLTRGSLDPANIERIEVIKGPSGTLFGSSLVS HCCCCCCCCCEEEEECEEEEEEHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHH YGGLINTVTKKPYSGFGGEVSYIAGSFGLNRVTADVNTPLDDNDNAAFRINAAYQTENSF HCCCEEHHHCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEEEEECCCCH QDAGYRTSIFVAPSLSYKVNEKLSFLINTEFMAEEKAASPILFLGQYSKLQYADLNDLNY HCCCCEEEEEEECCCCEEECCEEEEEEECHHHHHHHCCCCEEEEECCCCEEECCCCCCCC NTKLSFYSNDLPMKNPRFNLQAQMNYKISDQWTSQTILSRTSTKSKGYYSYMSDNEDGNR CEEEEEEECCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHCCCCCCCEEEECCCCCCCCC DFAFWITKENSQTATTDIQQNFIGDFKIGKMRNRLVAGLDYFERNLMFGGSGYAHLYNVT EEEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEECCCCCEEEEECC PQGEVRQLDPANSYNLSQTSVDKLLASAPGPDYNSKDAAYSAYVSDVLNITPALLVMASL CCCCCEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH RVDYFDNEGNIKKDTDNYNQTALSPKFGVVYQPIQDQLSVFANYMNGFRNIAPGLVYDGS EEEEECCCCCCCCCCCCCCCEECCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEECCC GNVIGTKTFEPEHADQLEAGIKADLFSDKVTAAASYYDINVANLVTSNPMYSSQGGEARS CCEEECCCCCCCCHHHHHCCCCHHHCCCCHHEEEEEEEEEHHHEEECCCCCCCCCCCHHH QGFEFDLNAAVSKNFSIIAGYSYNQSKITKGDINNVWLDEGKRPFWAGPKNLVNLWATYK CCCEEEECHHHCCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHEEEEEEEE FDEGALENFGLGFGGNYASDNAVLDSDVTGKFVLPAYTVINGSVFYNSNKFRVSLNVNNI ECCCCHHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEEEEECEEEECCCEEEEEEEECCC TNKDYFNGGWSTVNPQKPRNVAASFTYKF CCCCCCCCCCCCCCCCCCCCEEEEEEECC >Mature Secondary Structure MNYFNRSMKRFMYLTALLFIFTSTVNAQQTDGKIKGNITTSDGEPAIGVNIILKNSKYGT CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCC VSEEDGSFEFNRVKPNTYTVQVSLSGYETLEQDVTVSASETSSLNLQLKVSNKQLKEIIV CCCCCCCEEEEEECCCEEEEEEEECCCHHHHCCEEEEECCCCEEEEEEEECCCCEEEEEE TNSRGKAFPKQSSFVSKMPLKNVENPQVYNIVSSELMKEQVITNYDDALKNVPGIQKLWQ ECCCCCCCCCHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHH STGRGGDGGSFYSLRGFEVQANVVNGLPGLTRGSLDPANIERIEVIKGPSGTLFGSSLVS HCCCCCCCCCEEEEECEEEEEEHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHH YGGLINTVTKKPYSGFGGEVSYIAGSFGLNRVTADVNTPLDDNDNAAFRINAAYQTENSF HCCCEEHHHCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEEEEECCCCH QDAGYRTSIFVAPSLSYKVNEKLSFLINTEFMAEEKAASPILFLGQYSKLQYADLNDLNY HCCCCEEEEEEECCCCEEECCEEEEEEECHHHHHHHCCCCEEEEECCCCEEECCCCCCCC NTKLSFYSNDLPMKNPRFNLQAQMNYKISDQWTSQTILSRTSTKSKGYYSYMSDNEDGNR CEEEEEEECCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHCCCCCCCEEEECCCCCCCCC DFAFWITKENSQTATTDIQQNFIGDFKIGKMRNRLVAGLDYFERNLMFGGSGYAHLYNVT EEEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEECCCCCEEEEECC PQGEVRQLDPANSYNLSQTSVDKLLASAPGPDYNSKDAAYSAYVSDVLNITPALLVMASL CCCCCEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH RVDYFDNEGNIKKDTDNYNQTALSPKFGVVYQPIQDQLSVFANYMNGFRNIAPGLVYDGS EEEEECCCCCCCCCCCCCCCEECCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEECCC GNVIGTKTFEPEHADQLEAGIKADLFSDKVTAAASYYDINVANLVTSNPMYSSQGGEARS CCEEECCCCCCCCHHHHHCCCCHHHCCCCHHEEEEEEEEEHHHEEECCCCCCCCCCCHHH QGFEFDLNAAVSKNFSIIAGYSYNQSKITKGDINNVWLDEGKRPFWAGPKNLVNLWATYK CCCEEEECHHHCCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHEEEEEEEE FDEGALENFGLGFGGNYASDNAVLDSDVTGKFVLPAYTVINGSVFYNSNKFRVSLNVNNI ECCCCHHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEEEEECEEEECCCEEEEEEEECCC TNKDYFNGGWSTVNPQKPRNVAASFTYKF CCCCCCCCCCCCCCCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8576065 [H]