| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is cbg-1 [H]
Identifier: 146299801
GI number: 146299801
Start: 2403997
End: 2406657
Strand: Direct
Name: cbg-1 [H]
Synonym: Fjoh_2042
Alternate gene names: 146299801
Gene position: 2403997-2406657 (Clockwise)
Preceding gene: 146299800
Following gene: 146299802
Centisome position: 39.43
GC content: 37.39
Gene sequence:
>2661_bases ATGTTACAACTAAAAATCAAAAAAACAGCCATTATTTTTGTAATGGCTGTAGGTTTTTTTAACCAAACCTATGCGCAGAA AAAATACCCGTATCAAGATCCAAAATTACCGGTAGAAGATAGGGTAAAAGACTTGTTAAGTCGTATGTCGCTTGAAGAAA AAGCACGCCAGATGGATATGTACAGAGGAGACTTTTTTAAAGACAAAGAAGATTTCGCTAAATCTAAATCGGCAGAAAAA ATTGGAAAATTAGGAATTGGAGCCATCCATGATCTTTATCCGCGTTCGGCTAAAATGATTAATGATCTGCAAACAAACGT AATAAAAGGAAACCGCTGGGGAATTCCTGCACTGATTATGTGTGAAATGCTTCACGGTTATCTAGATGAAGGAAGTACGG CTTTCCCAATGAATATTGGACTTGGCGCAACCTGGGATGTTGCTGTGATGGACAAAGTGGGTAAAGTAATTGGTATGGAA GCCAGAGCGCATGGAGTTCATTTTGGTTTTGGACCAAACCTAGATTTAGGGCGCGAACCACGTTGGGGGAGAGTTGCTGA AACTTTTGGTGAAGATGCATACTTAAACAGCGAAATTGGTTTGGCTTTTATAAAAGGAATACAGGGAGACGATTTAAAAT CAGATCGTTCGATTATTGCAGAACCAAAACACTTTGCGGTTCACGGTATTCCGCAGGCAGGAGGAAATTCTTCGCCAATT TTGGTTGGAGAACGTTCTGCAAGAGAAGACCATTTGCCATCTTTTGAAAAAGCATTTAGAAAAGGCGGTGCGTTAGGAAC AATGTGTGCTTATTCTGAGTTAGACGGGATTCCTTGTGCAGCAAACAATTGGTTATTGACTGATGTTTTGAGAAACGAAT GGGGTTTTAAAGGTCTTGTAGTTTCAGACTTAGGTGCTATTAAATACATTCAGACAACTCATAAAGTTGCTGATTCTCCA AAAGAGAGTATTAGAGAAGCAGTTTCAGCTGGTGTTGATATGCAGTTTTATGATTTTAGTAATGAATTTTGGCAGAATAC AATCATTGAATTAGTAAATGAAAAGAAACTGACAATGGAAAACATCGACCGTGCTGCGGGAGGAGTTTTACGTTTGAAAT TCTTATTAGGATTATTTGAAAATCCATACACAGAAAAAAATCTGATTAAAGATCGTTTTCATACTCCGGAAAATCAGCAG GTTGCTCTTGAAGCGGCGCAGAAATCAATGGTTTTATTGAAAAATGAGAACAACATTCTGCCTTTAAGCAAAAGTTTAAA AAATATTGCCGTTATCGGACCAAATGCAAATGCTTCAAGATTGGGAGGTTATGCTCCTAAAAACAGTGTTGGTATGACAG TTTATGAAGGTTTACAGCAATTAGTTGGAAAAACTGCCAATGTAGTTTATGAAGAAGGAGTTCCATTAATTGTAAAAGGA CAGATTATTCCATCTAAATATTTATTTACTCCAGATGAATCTCAAAACGGATTAAAAGGAGAATATTTCAATAACAGAAA TCTTGAAGGAACTCCCGCATTGACTCGTATCGACAGTCAGTTAGAGTTTGACTGGCCTTGGGCTCCCGGAGATGGCGTAA ATGTGGATGATTTTTCTATCAGATGGACAGGATTCTTAAAATCAGATCAGGCTCTTGACGGCTGGTTAGGTTTAAGTTCT GATGACGGAATCAGAATGTATATCGACGATCAATTGGTTATTGACAACTGGACAAAAGGAGCGACAAGTATGGTTACGAC TCCAAAAAACATCGAAAAAGGTAAAAAATACAAAGTCCGCATTGAAATGTGGGAAGGAGGCTGGGGAGCCAGAGCGCATT TCCGCTGGAATTTAGAAAAAGTAAACTTACAGCCGGCAATCGAAGCTGCTAAAAAAGCTGATGTTGCGATTGTGGTTTTA GGAGAATCTAACGAATTGGTAGAAGAAAACAGAGATGTTGCTTCTTTAGACTTATTTGGAATCCAGCAGCAATTAATTGA AGAAATTCAAAAAACAGGAACTCCAGTAGTTTGTGTATTATTAAATGGCCGTCCGCTTTCTACAAACTGGATTTCTGAAA ATATTCCAGCGGTGTTGGAAGGATGGTTTCCTGGAGAATTAGGAGGTAGAGCAGTTGCTGATGTTTTATTTGGAGATTAC AATCCGGGTGGAAGACTGCCAATTACAGTTCCAAAATCAGTTGGGCAGTTACCTATATATTATAACCAAAAACCATCTGC TATTCATAAATACGTTGCAGAGAGTGAACATCCTTTATATTCATTCGGTTACGGATTAAGTTATACGAAGTTTGAATATT CTAATTTAAAACTAAATACTGCTGAAATTAAACCAAACGGAGAAGTAAAAGTTTCTGTAGATGTTAAAAACGTTGGAGAC AGAGACGGAGACGAGGTTGTTCAATTGTATATTAATGATGTATATAGTTCTGTAACAACACCCGAAAAGACATTAAAAGG TTTCAAAAGATTAAATATCAAAAAAGGAGAAATTAAAAATGTTGAATTTACACTTACTTCAGATGAGCTATCTCTTTGGA ACAGAGAAATGAAGCGCGTTGTAGAGCCTGGAGATTTTGAAGTTATGGTGGGTGGAAACTCGACAGATTTGCTTAAAACG AAATTTACGGTTTTGAACTAA
Upstream 100 bases:
>100_bases TGAACTAAACGGAAAAACACATAACAGCTTTTTTATTTCGCACGATGATTTTGTGAATGGAACAAAGCTTAAAGTGATTC AAAATTAAAACAACACAATT
Downstream 100 bases:
>100_bases AAAGAGTTAAAAAGGATAATATGTTTAACGATTAAGATAATTAAAAAAGAATGCTGTTAAAAAAACGATAAATCACTTAG ATTAATTCGATGTAAGGTCA
Product: glycoside hydrolase family 3 protein
Products: NA
Alternate protein names: Beta-D-glucoside glucohydrolase; Cellobiase; Gentiobiase [H]
Number of amino acids: Translated: 886; Mature: 886
Protein sequence:
>886_residues MLQLKIKKTAIIFVMAVGFFNQTYAQKKYPYQDPKLPVEDRVKDLLSRMSLEEKARQMDMYRGDFFKDKEDFAKSKSAEK IGKLGIGAIHDLYPRSAKMINDLQTNVIKGNRWGIPALIMCEMLHGYLDEGSTAFPMNIGLGATWDVAVMDKVGKVIGME ARAHGVHFGFGPNLDLGREPRWGRVAETFGEDAYLNSEIGLAFIKGIQGDDLKSDRSIIAEPKHFAVHGIPQAGGNSSPI LVGERSAREDHLPSFEKAFRKGGALGTMCAYSELDGIPCAANNWLLTDVLRNEWGFKGLVVSDLGAIKYIQTTHKVADSP KESIREAVSAGVDMQFYDFSNEFWQNTIIELVNEKKLTMENIDRAAGGVLRLKFLLGLFENPYTEKNLIKDRFHTPENQQ VALEAAQKSMVLLKNENNILPLSKSLKNIAVIGPNANASRLGGYAPKNSVGMTVYEGLQQLVGKTANVVYEEGVPLIVKG QIIPSKYLFTPDESQNGLKGEYFNNRNLEGTPALTRIDSQLEFDWPWAPGDGVNVDDFSIRWTGFLKSDQALDGWLGLSS DDGIRMYIDDQLVIDNWTKGATSMVTTPKNIEKGKKYKVRIEMWEGGWGARAHFRWNLEKVNLQPAIEAAKKADVAIVVL GESNELVEENRDVASLDLFGIQQQLIEEIQKTGTPVVCVLLNGRPLSTNWISENIPAVLEGWFPGELGGRAVADVLFGDY NPGGRLPITVPKSVGQLPIYYNQKPSAIHKYVAESEHPLYSFGYGLSYTKFEYSNLKLNTAEIKPNGEVKVSVDVKNVGD RDGDEVVQLYINDVYSSVTTPEKTLKGFKRLNIKKGEIKNVEFTLTSDELSLWNREMKRVVEPGDFEVMVGGNSTDLLKT KFTVLN
Sequences:
>Translated_886_residues MLQLKIKKTAIIFVMAVGFFNQTYAQKKYPYQDPKLPVEDRVKDLLSRMSLEEKARQMDMYRGDFFKDKEDFAKSKSAEK IGKLGIGAIHDLYPRSAKMINDLQTNVIKGNRWGIPALIMCEMLHGYLDEGSTAFPMNIGLGATWDVAVMDKVGKVIGME ARAHGVHFGFGPNLDLGREPRWGRVAETFGEDAYLNSEIGLAFIKGIQGDDLKSDRSIIAEPKHFAVHGIPQAGGNSSPI LVGERSAREDHLPSFEKAFRKGGALGTMCAYSELDGIPCAANNWLLTDVLRNEWGFKGLVVSDLGAIKYIQTTHKVADSP KESIREAVSAGVDMQFYDFSNEFWQNTIIELVNEKKLTMENIDRAAGGVLRLKFLLGLFENPYTEKNLIKDRFHTPENQQ VALEAAQKSMVLLKNENNILPLSKSLKNIAVIGPNANASRLGGYAPKNSVGMTVYEGLQQLVGKTANVVYEEGVPLIVKG QIIPSKYLFTPDESQNGLKGEYFNNRNLEGTPALTRIDSQLEFDWPWAPGDGVNVDDFSIRWTGFLKSDQALDGWLGLSS DDGIRMYIDDQLVIDNWTKGATSMVTTPKNIEKGKKYKVRIEMWEGGWGARAHFRWNLEKVNLQPAIEAAKKADVAIVVL GESNELVEENRDVASLDLFGIQQQLIEEIQKTGTPVVCVLLNGRPLSTNWISENIPAVLEGWFPGELGGRAVADVLFGDY NPGGRLPITVPKSVGQLPIYYNQKPSAIHKYVAESEHPLYSFGYGLSYTKFEYSNLKLNTAEIKPNGEVKVSVDVKNVGD RDGDEVVQLYINDVYSSVTTPEKTLKGFKRLNIKKGEIKNVEFTLTSDELSLWNREMKRVVEPGDFEVMVGGNSTDLLKT KFTVLN >Mature_886_residues MLQLKIKKTAIIFVMAVGFFNQTYAQKKYPYQDPKLPVEDRVKDLLSRMSLEEKARQMDMYRGDFFKDKEDFAKSKSAEK IGKLGIGAIHDLYPRSAKMINDLQTNVIKGNRWGIPALIMCEMLHGYLDEGSTAFPMNIGLGATWDVAVMDKVGKVIGME ARAHGVHFGFGPNLDLGREPRWGRVAETFGEDAYLNSEIGLAFIKGIQGDDLKSDRSIIAEPKHFAVHGIPQAGGNSSPI LVGERSAREDHLPSFEKAFRKGGALGTMCAYSELDGIPCAANNWLLTDVLRNEWGFKGLVVSDLGAIKYIQTTHKVADSP KESIREAVSAGVDMQFYDFSNEFWQNTIIELVNEKKLTMENIDRAAGGVLRLKFLLGLFENPYTEKNLIKDRFHTPENQQ VALEAAQKSMVLLKNENNILPLSKSLKNIAVIGPNANASRLGGYAPKNSVGMTVYEGLQQLVGKTANVVYEEGVPLIVKG QIIPSKYLFTPDESQNGLKGEYFNNRNLEGTPALTRIDSQLEFDWPWAPGDGVNVDDFSIRWTGFLKSDQALDGWLGLSS DDGIRMYIDDQLVIDNWTKGATSMVTTPKNIEKGKKYKVRIEMWEGGWGARAHFRWNLEKVNLQPAIEAAKKADVAIVVL GESNELVEENRDVASLDLFGIQQQLIEEIQKTGTPVVCVLLNGRPLSTNWISENIPAVLEGWFPGELGGRAVADVLFGDY NPGGRLPITVPKSVGQLPIYYNQKPSAIHKYVAESEHPLYSFGYGLSYTKFEYSNLKLNTAEIKPNGEVKVSVDVKNVGD RDGDEVVQLYINDVYSSVTTPEKTLKGFKRLNIKKGEIKNVEFTLTSDELSLWNREMKRVVEPGDFEVMVGGNSTDLLKT KFTVLN
Specific function: Involved in modifying a vir-inducing plant signal molecule. Hydrolyzes coniferin but not cellobiose [H]
COG id: COG1472
COG function: function code G; Beta-glucosidase-related glycosidases
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 3 family [H]
Homologues:
Organism=Escherichia coli, GI1788453, Length=451, Percent_Identity=32.5942350332594, Blast_Score=238, Evalue=1e-63,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019800 - InterPro: IPR002772 - InterPro: IPR001764 - InterPro: IPR017853 - InterPro: IPR011658 [H]
Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]
EC number: =3.2.1.21 [H]
Molecular weight: Translated: 98640; Mature: 98640
Theoretical pI: Translated: 5.91; Mature: 5.91
Prosite motif: PS00775 GLYCOSYL_HYDROL_F3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLQLKIKKTAIIFVMAVGFFNQTYAQKKYPYQDPKLPVEDRVKDLLSRMSLEEKARQMDM CEEEEEEHHEEEEHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH YRGDFFKDKEDFAKSKSAEKIGKLGIGAIHDLYPRSAKMINDLQTNVIKGNRWGIPALIM HCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHEECCCCCCCHHHHH CEMLHGYLDEGSTAFPMNIGLGATWDVAVMDKVGKVIGMEARAHGVHFGFGPNLDLGREP HHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCHHHCEEEECCCCCCCCCCCC RWGRVAETFGEDAYLNSEIGLAFIKGIQGDDLKSDRSIIAEPKHFAVHGIPQAGGNSSPI CCCHHHHHCCCCCEECCCCCCCEEECCCCCCCCCCCHHCCCCCEEEEECCCCCCCCCCCE LVGERSAREDHLPSFEKAFRKGGALGTMCAYSELDGIPCAANNWLLTDVLRNEWGFKGLV EEECCCCCCCCCCHHHHHHHCCCCEEHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCEEE VSDLGAIKYIQTTHKVADSPKESIREAVSAGVDMQFYDFSNEFWQNTIIELVNEKKLTME ECCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCHH NIDRAAGGVLRLKFLLGLFENPYTEKNLIKDRFHTPENQQVALEAAQKSMVLLKNENNIL HHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHCCCEEEEECCCCEE PLSKSLKNIAVIGPNANASRLGGYAPKNSVGMTVYEGLQQLVGKTANVVYEEGVPLIVKG CCCCCCCEEEEECCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCHHCEEEECCCCEEEEC QIIPSKYLFTPDESQNGLKGEYFNNRNLEGTPALTRIDSQLEFDWPWAPGDGVNVDDFSI EECCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHEECCCEEECCCCCCCCCCCCCCEEE RWTGFLKSDQALDGWLGLSSDDGIRMYIDDQLVIDNWTKGATSMVTTPKNIEKGKKYKVR EEEEEECCCCCCHHEECCCCCCCEEEEECCEEEEECCCCCCCEEEECCCCCCCCCEEEEE IEMWEGGWGARAHFRWNLEKVNLQPAIEAAKKADVAIVVLGESNELVEENRDVASLDLFG EEEECCCCCCEEEEEEEEEEECCCHHHHHHCCCCEEEEEECCCCHHHHCCCCEEEEHHHH IQQQLIEEIQKTGTPVVCVLLNGRPLSTNWISENIPAVLEGWFPGELGGRAVADVLFGDY HHHHHHHHHHHCCCCEEEEEECCEECCCCCCCCCCCHHEECCCCCCCCCHHHHHHHHCCC NPGGRLPITVPKSVGQLPIYYNQKPSAIHKYVAESEHPLYSFGYGLSYTKFEYSNLKLNT CCCCEEEEECCCCCCCCCEEECCCCHHHHHHHHCCCCCEEEECCCCEEEEEEECCEEEEE AEIKPNGEVKVSVDVKNVGDRDGDEVVQLYINDVYSSVTTPEKTLKGFKRLNIKKGEIKN EEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCE VEFTLTSDELSLWNREMKRVVEPGDFEVMVGGNSTDLLKTKFTVLN EEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEEECC >Mature Secondary Structure MLQLKIKKTAIIFVMAVGFFNQTYAQKKYPYQDPKLPVEDRVKDLLSRMSLEEKARQMDM CEEEEEEHHEEEEHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH YRGDFFKDKEDFAKSKSAEKIGKLGIGAIHDLYPRSAKMINDLQTNVIKGNRWGIPALIM HCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHEECCCCCCCHHHHH CEMLHGYLDEGSTAFPMNIGLGATWDVAVMDKVGKVIGMEARAHGVHFGFGPNLDLGREP HHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCHHHCEEEECCCCCCCCCCCC RWGRVAETFGEDAYLNSEIGLAFIKGIQGDDLKSDRSIIAEPKHFAVHGIPQAGGNSSPI CCCHHHHHCCCCCEECCCCCCCEEECCCCCCCCCCCHHCCCCCEEEEECCCCCCCCCCCE LVGERSAREDHLPSFEKAFRKGGALGTMCAYSELDGIPCAANNWLLTDVLRNEWGFKGLV EEECCCCCCCCCCHHHHHHHCCCCEEHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCEEE VSDLGAIKYIQTTHKVADSPKESIREAVSAGVDMQFYDFSNEFWQNTIIELVNEKKLTME ECCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCHH NIDRAAGGVLRLKFLLGLFENPYTEKNLIKDRFHTPENQQVALEAAQKSMVLLKNENNIL HHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHCCCEEEEECCCCEE PLSKSLKNIAVIGPNANASRLGGYAPKNSVGMTVYEGLQQLVGKTANVVYEEGVPLIVKG CCCCCCCEEEEECCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCHHCEEEECCCCEEEEC QIIPSKYLFTPDESQNGLKGEYFNNRNLEGTPALTRIDSQLEFDWPWAPGDGVNVDDFSI EECCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHEECCCEEECCCCCCCCCCCCCCEEE RWTGFLKSDQALDGWLGLSSDDGIRMYIDDQLVIDNWTKGATSMVTTPKNIEKGKKYKVR EEEEEECCCCCCHHEECCCCCCCEEEEECCEEEEECCCCCCCEEEECCCCCCCCCEEEEE IEMWEGGWGARAHFRWNLEKVNLQPAIEAAKKADVAIVVLGESNELVEENRDVASLDLFG EEEECCCCCCEEEEEEEEEEECCCHHHHHHCCCCEEEEEECCCCHHHHCCCCEEEEHHHH IQQQLIEEIQKTGTPVVCVLLNGRPLSTNWISENIPAVLEGWFPGELGGRAVADVLFGDY HHHHHHHHHHHCCCCEEEEEECCEECCCCCCCCCCCHHEECCCCCCCCCHHHHHHHHCCC NPGGRLPITVPKSVGQLPIYYNQKPSAIHKYVAESEHPLYSFGYGLSYTKFEYSNLKLNT CCCCEEEEECCCCCCCCCEEECCCCHHHHHHHHCCCCCEEEECCCCEEEEEEECCEEEEE AEIKPNGEVKVSVDVKNVGDRDGDEVVQLYINDVYSSVTTPEKTLKGFKRLNIKKGEIKN EEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCE VEFTLTSDELSLWNREMKRVVEPGDFEVMVGGNSTDLLKTKFTVLN EEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1537792 [H]