Definition Flavobacterium johnsoniae UW101 chromosome, complete genome.
Accession NC_009441
Length 6,096,872

Click here to switch to the map view.

The map label for this gene is 146299769

Identifier: 146299769

GI number: 146299769

Start: 2346810

End: 2348213

Strand: Direct

Name: 146299769

Synonym: Fjoh_2009

Alternate gene names: NA

Gene position: 2346810-2348213 (Clockwise)

Preceding gene: 146299768

Following gene: 146299770

Centisome position: 38.49

GC content: 34.76

Gene sequence:

>1404_bases
ATGAAAAATATATATAAAAAAGCAGCGTGCTTATTGGCTTTAGGATTGACTTTGGCATCTTGCGATGATTACTTGAATGA
TGTGCCAAAAGGAGCAAAATCTCCAGAAACATTAGCAGACTATGAAGCTTTTTTGCGTGACGAATACAATACAAGATTAG
ATATCTTAGGAGCTACGCATTTACTAAATGATCAATTCATAACAGCTGCTACACTTACAAGTAATAGGTTATATAATGCC
AATTATATGTGGGACGAAAATGCAGATCGTATTGCATTGAAGGTCTCAGATGAATCTACATATTACACAACTTATAGCGG
AATTTCGGCTTTTAATTTAATTATTGAAAATGCACTTTCGACTACTAAAGCGACTGAGCAAGAACAGAGAATAGTTTGGG
CGCAGGCAAAAATAATGCGTGCGATGAACTTTTTTTATGTGACTAATTTTTATGCAGATACTTATGTAGCTTCTACAGCG
TCAACAAAATTATCAGTTCCGTTAATTACAAGTGCCAATATTAATGCGCCAAGTAAACAAGTAACCATTCAGGAAATGTA
TGATTTTATTCTAAATGACATTAAAGAAGCATTACCATATTTGCCTAAGGTTGCTCAAACCGCTTTGCATCCAAATTTAG
GGGCAGGTTATGCTTTTTATTCAAGAGTTTATCTGCAGATGAATAATTATACAGAAGCTTTAAAATATGCTGATTTGGCA
TTAGCAGAAAATAATAAACTCTTTGACTGGGCAGCTTTTTACGAAGCAAATAAAGCCATTATAGATGTGCCAAATTCTTA
TACAACATCAGTTTCGCCAATGGGTTATAACAATGTTGAAAACTATGTTTTTAGACACGGTTCAAGCCGTTCATTAGGGA
GAGAGCCAAGCATACCAGTAGAAAGAGCTGCGCGTTTTGAAACGGGGGATGCACGTTTAAAATCTCGTTGGAAATTAAGA
ACCGTAGGAGCAGATACGTATTACTATTCAATATTGTCAGGAATGTACAATTTTGGCGGACTTACAACTGTTGAGGTTTA
TTTAATAAAAGCGGAGTGTTTAGCACGTGATAATAAAATCAGTGAAGCATTGGCTATTTTAAATGCGGTTCGTAAAACAC
GTATTCTTCCTGCATCTTATCAGGATATTGCAACTACAGATAAAGCAGCTGCTTTGAACGCTATTTACAAAACAAAAAAT
AATGAATTTGTACAGACTCTTATTCCTTATGCAGATGCAAGACGTTTAAATGCAGAAGGTGTTTATAAAGTTAGTTTTAC
CAAAACAGCAAACGGAAATACCTATACTTTAAAATCAGATTCTCATTTATGGACAATGCCATTTCCACAAGGAGCAACAC
AAAATCCAGGAAACGGAACATTAACACAAAACGTAGATAAATAA

Upstream 100 bases:

>100_bases
TTGCCAAAAGCAGAGATGCCAAATACATGCTGGGCGGTTTCATATCTCCAAGCTTTGTTATGGGTGTAAATGTTAATTTC
TAATTTATAAAGACTAGACG

Downstream 100 bases:

>100_bases
TAACTCAAAAGCTTCCTGATTAGGAACTCCAAAAGGGAAGCTTTTCTATAAAACATCGATCAAAAATGAATACAATTAAA
TATAAAATAACAGCTTTGTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 467; Mature: 467

Protein sequence:

>467_residues
MKNIYKKAACLLALGLTLASCDDYLNDVPKGAKSPETLADYEAFLRDEYNTRLDILGATHLLNDQFITAATLTSNRLYNA
NYMWDENADRIALKVSDESTYYTTYSGISAFNLIIENALSTTKATEQEQRIVWAQAKIMRAMNFFYVTNFYADTYVASTA
STKLSVPLITSANINAPSKQVTIQEMYDFILNDIKEALPYLPKVAQTALHPNLGAGYAFYSRVYLQMNNYTEALKYADLA
LAENNKLFDWAAFYEANKAIIDVPNSYTTSVSPMGYNNVENYVFRHGSSRSLGREPSIPVERAARFETGDARLKSRWKLR
TVGADTYYYSILSGMYNFGGLTTVEVYLIKAECLARDNKISEALAILNAVRKTRILPASYQDIATTDKAAALNAIYKTKN
NEFVQTLIPYADARRLNAEGVYKVSFTKTANGNTYTLKSDSHLWTMPFPQGATQNPGNGTLTQNVDK

Sequences:

>Translated_467_residues
MKNIYKKAACLLALGLTLASCDDYLNDVPKGAKSPETLADYEAFLRDEYNTRLDILGATHLLNDQFITAATLTSNRLYNA
NYMWDENADRIALKVSDESTYYTTYSGISAFNLIIENALSTTKATEQEQRIVWAQAKIMRAMNFFYVTNFYADTYVASTA
STKLSVPLITSANINAPSKQVTIQEMYDFILNDIKEALPYLPKVAQTALHPNLGAGYAFYSRVYLQMNNYTEALKYADLA
LAENNKLFDWAAFYEANKAIIDVPNSYTTSVSPMGYNNVENYVFRHGSSRSLGREPSIPVERAARFETGDARLKSRWKLR
TVGADTYYYSILSGMYNFGGLTTVEVYLIKAECLARDNKISEALAILNAVRKTRILPASYQDIATTDKAAALNAIYKTKN
NEFVQTLIPYADARRLNAEGVYKVSFTKTANGNTYTLKSDSHLWTMPFPQGATQNPGNGTLTQNVDK
>Mature_467_residues
MKNIYKKAACLLALGLTLASCDDYLNDVPKGAKSPETLADYEAFLRDEYNTRLDILGATHLLNDQFITAATLTSNRLYNA
NYMWDENADRIALKVSDESTYYTTYSGISAFNLIIENALSTTKATEQEQRIVWAQAKIMRAMNFFYVTNFYADTYVASTA
STKLSVPLITSANINAPSKQVTIQEMYDFILNDIKEALPYLPKVAQTALHPNLGAGYAFYSRVYLQMNNYTEALKYADLA
LAENNKLFDWAAFYEANKAIIDVPNSYTTSVSPMGYNNVENYVFRHGSSRSLGREPSIPVERAARFETGDARLKSRWKLR
TVGADTYYYSILSGMYNFGGLTTVEVYLIKAECLARDNKISEALAILNAVRKTRILPASYQDIATTDKAAALNAIYKTKN
NEFVQTLIPYADARRLNAEGVYKVSFTKTANGNTYTLKSDSHLWTMPFPQGATQNPGNGTLTQNVDK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52264; Mature: 52264

Theoretical pI: Translated: 7.96; Mature: 7.96

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNIYKKAACLLALGLTLASCDDYLNDVPKGAKSPETLADYEAFLRDEYNTRLDILGATH
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEHHH
LLNDQFITAATLTSNRLYNANYMWDENADRIALKVSDESTYYTTYSGISAFNLIIENALS
HHCCCEEEEEEEECCEEECCCEEECCCCCEEEEEEECCCEEEEEECCHHHHHHHHHHHHH
TTKATEQEQRIVWAQAKIMRAMNFFYVTNFYADTYVASTASTKLSVPLITSANINAPSKQ
HHHCCHHHHHHHHHHHHHHHHHHHHHEEEEHHHHEEECCCCCEEEEEEEEECCCCCCCCE
VTIQEMYDFILNDIKEALPYLPKVAQTALHPNLGAGYAFYSRVYLQMNNYTEALKYADLA
EEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEEEEEEEECCHHHHHHHHHEE
LAENNKLFDWAAFYEANKAIIDVPNSYTTSVSPMGYNNVENYVFRHGSSRSLGREPSIPV
EECCCCEEEEHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHEECCCCCCCCCCCCCCH
ERAARFETGDARLKSRWKLRTVGADTYYYSILSGMYNFGGLTTVEVYLIKAECLARDNKI
HHHHCCCCCCHHHHCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEEEEHHHHHCCCHH
SEALAILNAVRKTRILPASYQDIATTDKAAALNAIYKTKNNEFVQTLIPYADARRLNAEG
HHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHCCCCHHHHHHHCCHHCCCCCCCC
VYKVSFTKTANGNTYTLKSDSHLWTMPFPQGATQNPGNGTLTQNVDK
EEEEEEEEECCCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKNIYKKAACLLALGLTLASCDDYLNDVPKGAKSPETLADYEAFLRDEYNTRLDILGATH
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEHHH
LLNDQFITAATLTSNRLYNANYMWDENADRIALKVSDESTYYTTYSGISAFNLIIENALS
HHCCCEEEEEEEECCEEECCCEEECCCCCEEEEEEECCCEEEEEECCHHHHHHHHHHHHH
TTKATEQEQRIVWAQAKIMRAMNFFYVTNFYADTYVASTASTKLSVPLITSANINAPSKQ
HHHCCHHHHHHHHHHHHHHHHHHHHHEEEEHHHHEEECCCCCEEEEEEEEECCCCCCCCE
VTIQEMYDFILNDIKEALPYLPKVAQTALHPNLGAGYAFYSRVYLQMNNYTEALKYADLA
EEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEEEEEEEECCHHHHHHHHHEE
LAENNKLFDWAAFYEANKAIIDVPNSYTTSVSPMGYNNVENYVFRHGSSRSLGREPSIPV
EECCCCEEEEHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHEECCCCCCCCCCCCCCH
ERAARFETGDARLKSRWKLRTVGADTYYYSILSGMYNFGGLTTVEVYLIKAECLARDNKI
HHHHCCCCCCHHHHCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEEEEHHHHHCCCHH
SEALAILNAVRKTRILPASYQDIATTDKAAALNAIYKTKNNEFVQTLIPYADARRLNAEG
HHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHCCCCHHHHHHHCCHHCCCCCCCC
VYKVSFTKTANGNTYTLKSDSHLWTMPFPQGATQNPGNGTLTQNVDK
EEEEEEEEECCCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA