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The map label for this gene is xylA [H]

Identifier: 146299761

GI number: 146299761

Start: 2336501

End: 2337826

Strand: Direct

Name: xylA [H]

Synonym: Fjoh_2001

Alternate gene names: 146299761

Gene position: 2336501-2337826 (Clockwise)

Preceding gene: 146299760

Following gene: 146299762

Centisome position: 38.32

GC content: 36.95

Gene sequence:

>1326_bases
ATGATAGTTTTAGGAGATAAAGAATACTACAAAGGTATCGGCCAAATTAAATTTGAAGGAAAAGAATCTGATAATCCGCT
GGCATTTAAATATTATAATCCAGACCAAATTGTAGCTGGAAAAACAATGCGTGAGCACTTTAAATTTGCTATCGCATATT
GGCATACATTCTGCGGACAAGGAAGCGACCCATTTGGACCAGGAACACAGCAATTTGCTTGGGATGCTTCGTCAGATCCA
TATCAGGCTGCAAAAGATAAAGCAGATGCAGCTTTTGAATTTATCAGCAAAATGGGATTCGATTATTTCTGTTTCCACGA
TTACGATTTGATCGCTGAAGGAGCAACTTTTGCAGAATCAGAAAAACGTTTGGCTTTTATTACAGATTACTTAAAACAGA
AAAAAGCAGAATCTGGAATTAAATTACTTTGGGGAACTTCAAACTGTTTCTCAAACCCAAGATTCATGAACGGAGCAGCT
ACAAATCCAGATTTTAATGTAGTAGCAAGAGCTGGTGGACAAGTAAAATTAGCTTTGGACGCAACTATCGCTTTAGGCGG
AGAAAACTATGTATTCTGGGGTGGTAGAGAAGGTTATATGTCTTTACTAAACACAGATATGGGAAGAGAATTAGACCACA
TGGCACAATTCTTAGCAATGTCTAGAGACTACGCAAGAGCTCAAGGTTTTAAAGGAACTTTCTTTATTGAGCCAAAACCA
ATGGAACCATCAAAACACCAATACGATTTTGACTCGGCTACAGCAATTGGATTCTTGAAAAATTATGGTTTAGACAAAGA
TTTCAAAATCAATATCGAAGTAAACCACGCTACTTTGGCACAGCATACTTTCCAACACGAATTAGAAGTAGCTGCAAAAG
CAGGAATGTTAGGAAGCATCGATGCAAATAGAGGAGATTACCAAAACGGATGGGATACAGATCAATTCCCAAATAATATC
CAAGAAACTACTGAAGCGATGTTGGTTTTCTTAAAAGCCGGCGGATTGCAAGGTGGTGGAGTTAACTTTGATGCTAAAAT
CAGAAGAAATTCAACTGATTTAGAAGATGTTTTCTTAGCGCACATTGGCGGAGCTGATACTTTTGCAAGAGCTTTATTGA
CTGCAGACAAAATCATCACTTCTTCTCCTTACGAAAAATTAAGAAAAGAAAGATACAGCTCATTCGATTCTGGAAAAGGG
AAAGATTTTGCTGATGGAAAATTAAGCCTTAAAGATCTTTATACTATCGCTCACGAAAACGGAGAATTAAATCTTCAAAG
CGGTAAGCAAGAATTGTTTGAAAACATCATCAACCAATATATTTAA

Upstream 100 bases:

>100_bases
GACGTTTTTACCGCTGCACAACAAAGAACCTTACGAAACGGCTTATAAAAAATGGAAACAAGAATTAGAATTAATATTAA
CAAATAAATAAAAAAATCAA

Downstream 100 bases:

>100_bases
TTGGTTTTAGATTTTAATATCAAAAATATAGTGAGATAAAATTGAGAGAATGTGTATTAAGATTATGATTTGTTTTGAAA
GTGAGATTTAAAAATAGGTT

Product: xylose isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MIVLGDKEYYKGIGQIKFEGKESDNPLAFKYYNPDQIVAGKTMREHFKFAIAYWHTFCGQGSDPFGPGTQQFAWDASSDP
YQAAKDKADAAFEFISKMGFDYFCFHDYDLIAEGATFAESEKRLAFITDYLKQKKAESGIKLLWGTSNCFSNPRFMNGAA
TNPDFNVVARAGGQVKLALDATIALGGENYVFWGGREGYMSLLNTDMGRELDHMAQFLAMSRDYARAQGFKGTFFIEPKP
MEPSKHQYDFDSATAIGFLKNYGLDKDFKINIEVNHATLAQHTFQHELEVAAKAGMLGSIDANRGDYQNGWDTDQFPNNI
QETTEAMLVFLKAGGLQGGGVNFDAKIRRNSTDLEDVFLAHIGGADTFARALLTADKIITSSPYEKLRKERYSSFDSGKG
KDFADGKLSLKDLYTIAHENGELNLQSGKQELFENIINQYI

Sequences:

>Translated_441_residues
MIVLGDKEYYKGIGQIKFEGKESDNPLAFKYYNPDQIVAGKTMREHFKFAIAYWHTFCGQGSDPFGPGTQQFAWDASSDP
YQAAKDKADAAFEFISKMGFDYFCFHDYDLIAEGATFAESEKRLAFITDYLKQKKAESGIKLLWGTSNCFSNPRFMNGAA
TNPDFNVVARAGGQVKLALDATIALGGENYVFWGGREGYMSLLNTDMGRELDHMAQFLAMSRDYARAQGFKGTFFIEPKP
MEPSKHQYDFDSATAIGFLKNYGLDKDFKINIEVNHATLAQHTFQHELEVAAKAGMLGSIDANRGDYQNGWDTDQFPNNI
QETTEAMLVFLKAGGLQGGGVNFDAKIRRNSTDLEDVFLAHIGGADTFARALLTADKIITSSPYEKLRKERYSSFDSGKG
KDFADGKLSLKDLYTIAHENGELNLQSGKQELFENIINQYI
>Mature_441_residues
MIVLGDKEYYKGIGQIKFEGKESDNPLAFKYYNPDQIVAGKTMREHFKFAIAYWHTFCGQGSDPFGPGTQQFAWDASSDP
YQAAKDKADAAFEFISKMGFDYFCFHDYDLIAEGATFAESEKRLAFITDYLKQKKAESGIKLLWGTSNCFSNPRFMNGAA
TNPDFNVVARAGGQVKLALDATIALGGENYVFWGGREGYMSLLNTDMGRELDHMAQFLAMSRDYARAQGFKGTFFIEPKP
MEPSKHQYDFDSATAIGFLKNYGLDKDFKINIEVNHATLAQHTFQHELEVAAKAGMLGSIDANRGDYQNGWDTDQFPNNI
QETTEAMLVFLKAGGLQGGGVNFDAKIRRNSTDLEDVFLAHIGGADTFARALLTADKIITSSPYEKLRKERYSSFDSGKG
KDFADGKLSLKDLYTIAHENGELNLQSGKQELFENIINQYI

Specific function: Unknown

COG id: COG2115

COG function: function code G; Xylose isomerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xylose isomerase family [H]

Homologues:

Organism=Escherichia coli, GI1789988, Length=434, Percent_Identity=50.6912442396313, Blast_Score=464, Evalue=1e-132,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307
- InterPro:   IPR013452
- InterPro:   IPR001998 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: =5.3.1.5 [H]

Molecular weight: Translated: 49277; Mature: 49277

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: PS00172 XYLOSE_ISOMERASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVLGDKEYYKGIGQIKFEGKESDNPLAFKYYNPDQIVAGKTMREHFKFAIAYWHTFCGQ
CEEECCHHHHCCCCEEEECCCCCCCCEEEEEECCCCEECCHHHHHHHHHHHHHHHHHHCC
GSDPFGPGTQQFAWDASSDPYQAAKDKADAAFEFISKMGFDYFCFHDYDLIAEGATFAES
CCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHCCCCCHHCC
EKRLAFITDYLKQKKAESGIKLLWGTSNCFSNPRFMNGAATNPDFNVVARAGGQVKLALD
CCHHHHHHHHHHHHHHCCCCEEEEECHHHCCCCCCCCCCCCCCCCEEEEECCCEEEEEEE
ATIALGGENYVFWGGREGYMSLLNTDMGRELDHMAQFLAMSRDYARAQGFKGTFFIEPKP
EEEEECCCEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC
MEPSKHQYDFDSATAIGFLKNYGLDKDFKINIEVNHATLAQHTFQHELEVAAKAGMLGSI
CCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCEECC
DANRGDYQNGWDTDQFPNNIQETTEAMLVFLKAGGLQGGGVNFDAKIRRNSTDLEDVFLA
CCCCCCCCCCCCCCCCCCHHHHHHHHHEEHHHCCCCCCCCCCEEEEEECCCCCHHHHHHH
HIGGADTFARALLTADKIITSSPYEKLRKERYSSFDSGKGKDFADGKLSLKDLYTIAHEN
HCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHCCC
GELNLQSGKQELFENIINQYI
CEEEECCHHHHHHHHHHHHCC
>Mature Secondary Structure
MIVLGDKEYYKGIGQIKFEGKESDNPLAFKYYNPDQIVAGKTMREHFKFAIAYWHTFCGQ
CEEECCHHHHCCCCEEEECCCCCCCCEEEEEECCCCEECCHHHHHHHHHHHHHHHHHHCC
GSDPFGPGTQQFAWDASSDPYQAAKDKADAAFEFISKMGFDYFCFHDYDLIAEGATFAES
CCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHCCCCCHHCC
EKRLAFITDYLKQKKAESGIKLLWGTSNCFSNPRFMNGAATNPDFNVVARAGGQVKLALD
CCHHHHHHHHHHHHHHCCCCEEEEECHHHCCCCCCCCCCCCCCCCEEEEECCCEEEEEEE
ATIALGGENYVFWGGREGYMSLLNTDMGRELDHMAQFLAMSRDYARAQGFKGTFFIEPKP
EEEEECCCEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC
MEPSKHQYDFDSATAIGFLKNYGLDKDFKINIEVNHATLAQHTFQHELEVAAKAGMLGSI
CCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCEECC
DANRGDYQNGWDTDQFPNNIQETTEAMLVFLKAGGLQGGGVNFDAKIRRNSTDLEDVFLA
CCCCCCCCCCCCCCCCCCHHHHHHHHHEEHHHCCCCCCCCCCEEEEEECCCCCHHHHHHH
HIGGADTFARALLTADKIITSSPYEKLRKERYSSFDSGKGKDFADGKLSLKDLYTIAHEN
HCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHCCC
GELNLQSGKQELFENIINQYI
CEEEECCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA