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The map label for this gene is xerC [H]

Identifier: 146299694

GI number: 146299694

Start: 2237136

End: 2238029

Strand: Direct

Name: xerC [H]

Synonym: Fjoh_1934

Alternate gene names: 146299694

Gene position: 2237136-2238029 (Clockwise)

Preceding gene: 146299693

Following gene: 146299695

Centisome position: 36.69

GC content: 34.12

Gene sequence:

>894_bases
ATGAAATCAAATAAGCAGGCATTTCAGGATTATTTACAGTTTGAGAAAAAATATTCTCCTCATACTGTAAATGCTTATTT
AAATGATTTGGGTTTTTTTGAAGAGTTTAATAAAGAGCGTTTTGAGCAGGATTCTATTGAGAGAGTAAATTATAGTCAAA
TCAGGAGCTGGATTGTTTTTTTGGTAGATCAAGGAGTTTCGAATGTTTCTGTAAATCGTAAAATGGCGTCTTTAAAAGCG
TTTTATAAATTCCTTTTAAAAATAAAGCAGATAGAGGTAAGTCCAATGCTTAAACATAAGGCGCTCAAGACTCCTAAAAT
TGTCCAGATTCCGTTTTCAGAAAAAGAAGTAAGTGATTTGATGTTTGGAGTTGAGTCTCCAATTGGCTTTGAGGAGGTTA
GGGATAAGCTTATTGTGGATTTGTTTTATACTACAGGAATGCGTCGGGCAGAATTGATAGGTTTAATGTTGAAAAATGTT
GATTTGTCTTCGGGTGTTGTGAAGGTTTTGGGTAAAAGGAGTAAAGAGCGTATTGTGCCGCTTCTGCCGATAGTTGCGGA
TCAAATTAATTTATATATAAAAGAAAGAGAGCAGCTTGATCAGATTGTGGATTCTGAATATTTTTTTATTTCGAAAAAAG
GGTTAAAATTAAGCGAATCTTTTGTGTATCGATTAATAAATTGTTACTTTAGTAGGGTCTCTGAAAAGGTAAAGAAGAGT
CCGCATGTGCTTCGGCATACTTTTGCGACTCACTTGCTGAATAATGGGGCAGATTTAAATTCAGTTAAGGAATTATTAGG
GCATTCGAGTTTGGCGTCTACGCAGGTTTATACTCATAATAGTTTAGCAGAGTTAAAAAAAGTATATTCAGAAGCGCATC
CGAGAAATAAATAA

Upstream 100 bases:

>100_bases
TATTTTGCTTTTCAAAAATAATTACCGTTAGTGGTCAAAATGTATTAATTTTGATCCTAACGGTTTTTTATTTTAAAACC
TTTTGTAATTTATTGATGAT

Downstream 100 bases:

>100_bases
TAGTTCCAAAAGTTTAACCCTAAAATTATTATTATGAAGGTAGATGTTCATGCAGTTAACTTTACTGTCGACAGAAAATT
GGTGGATTTTATTCAAGAAA

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MKSNKQAFQDYLQFEKKYSPHTVNAYLNDLGFFEEFNKERFEQDSIERVNYSQIRSWIVFLVDQGVSNVSVNRKMASLKA
FYKFLLKIKQIEVSPMLKHKALKTPKIVQIPFSEKEVSDLMFGVESPIGFEEVRDKLIVDLFYTTGMRRAELIGLMLKNV
DLSSGVVKVLGKRSKERIVPLLPIVADQINLYIKEREQLDQIVDSEYFFISKKGLKLSESFVYRLINCYFSRVSEKVKKS
PHVLRHTFATHLLNNGADLNSVKELLGHSSLASTQVYTHNSLAELKKVYSEAHPRNK

Sequences:

>Translated_297_residues
MKSNKQAFQDYLQFEKKYSPHTVNAYLNDLGFFEEFNKERFEQDSIERVNYSQIRSWIVFLVDQGVSNVSVNRKMASLKA
FYKFLLKIKQIEVSPMLKHKALKTPKIVQIPFSEKEVSDLMFGVESPIGFEEVRDKLIVDLFYTTGMRRAELIGLMLKNV
DLSSGVVKVLGKRSKERIVPLLPIVADQINLYIKEREQLDQIVDSEYFFISKKGLKLSESFVYRLINCYFSRVSEKVKKS
PHVLRHTFATHLLNNGADLNSVKELLGHSSLASTQVYTHNSLAELKKVYSEAHPRNK
>Mature_297_residues
MKSNKQAFQDYLQFEKKYSPHTVNAYLNDLGFFEEFNKERFEQDSIERVNYSQIRSWIVFLVDQGVSNVSVNRKMASLKA
FYKFLLKIKQIEVSPMLKHKALKTPKIVQIPFSEKEVSDLMFGVESPIGFEEVRDKLIVDLFYTTGMRRAELIGLMLKNV
DLSSGVVKVLGKRSKERIVPLLPIVADQINLYIKEREQLDQIVDSEYFFISKKGLKLSESFVYRLINCYFSRVSEKVKKS
PHVLRHTFATHLLNNGADLNSVKELLGHSSLASTQVYTHNSLAELKKVYSEAHPRNK

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=292, Percent_Identity=32.5342465753425, Blast_Score=157, Evalue=9e-40,
Organism=Escherichia coli, GI1790244, Length=288, Percent_Identity=30.9027777777778, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1790768, Length=181, Percent_Identity=27.6243093922652, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1790767, Length=187, Percent_Identity=22.9946524064171, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 34366; Mature: 34366

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSNKQAFQDYLQFEKKYSPHTVNAYLNDLGFFEEFNKERFEQDSIERVNYSQIRSWIVF
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHH
LVDQGVSNVSVNRKMASLKAFYKFLLKIKQIEVSPMLKHKALKTPKIVQIPFSEKEVSDL
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHH
MFGVESPIGFEEVRDKLIVDLFYTTGMRRAELIGLMLKNVDLSSGVVKVLGKRSKERIVP
HHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHCCH
LLPIVADQINLYIKEREQLDQIVDSEYFFISKKGLKLSESFVYRLINCYFSRVSEKVKKS
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHC
PHVLRHTFATHLLNNGADLNSVKELLGHSSLASTQVYTHNSLAELKKVYSEAHPRNK
HHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKSNKQAFQDYLQFEKKYSPHTVNAYLNDLGFFEEFNKERFEQDSIERVNYSQIRSWIVF
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHH
LVDQGVSNVSVNRKMASLKAFYKFLLKIKQIEVSPMLKHKALKTPKIVQIPFSEKEVSDL
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHH
MFGVESPIGFEEVRDKLIVDLFYTTGMRRAELIGLMLKNVDLSSGVVKVLGKRSKERIVP
HHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHCCH
LLPIVADQINLYIKEREQLDQIVDSEYFFISKKGLKLSESFVYRLINCYFSRVSEKVKKS
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHC
PHVLRHTFATHLLNNGADLNSVKELLGHSSLASTQVYTHNSLAELKKVYSEAHPRNK
HHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA