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The map label for this gene is rpsU

Identifier: 146299693

GI number: 146299693

Start: 2236841

End: 2237035

Strand: Direct

Name: rpsU

Synonym: Fjoh_1933

Alternate gene names: 146299693

Gene position: 2236841-2237035 (Clockwise)

Preceding gene: 146299692

Following gene: 146299694

Centisome position: 36.69

GC content: 30.77

Gene sequence:

>195_bases
ATGTTAATTATACCAATTAAAGACGGAGAAAATATCGATAGAGCATTAAAGCGCTATAAGAGAAAATTTGATAAAACAGG
AACTGTTCGTCAATTAAGAGCACGTACTGCTTTTATTAAGCCTTCTGTTGTAAAAAGAGCTCAAATTCAAAAAGCTGCTT
ACATTCAAACTTTGAAAGATAGTTTAGAAAGTTAG

Upstream 100 bases:

>100_bases
ATTGAAAGAATAGATTTTGTAAAATAATTTACATTTTATAATTCATAATTCATAATTAATTTTTACATTTGCAGCCTTAA
CGAGAGGAGGTGTCTATATT

Downstream 100 bases:

>100_bases
TATTTTGCTTTTCAAAAATAATTACCGTTAGTGGTCAAAATGTATTAATTTTGATCCTAACGGTTTTTTATTTTAAAACC
TTTTGTAATTTATTGATGAT

Product: 30S ribosomal protein S21

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 64; Mature: 64

Protein sequence:

>64_residues
MLIIPIKDGENIDRALKRYKRKFDKTGTVRQLRARTAFIKPSVVKRAQIQKAAYIQTLKDSLES

Sequences:

>Translated_64_residues
MLIIPIKDGENIDRALKRYKRKFDKTGTVRQLRARTAFIKPSVVKRAQIQKAAYIQTLKDSLES
>Mature_64_residues
MLIIPIKDGENIDRALKRYKRKFDKTGTVRQLRARTAFIKPSVVKRAQIQKAAYIQTLKDSLES

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S21P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS21_FLAJ1 (A5FIL0)

Other databases:

- EMBL:   CP000685
- RefSeq:   YP_001194284.1
- ProteinModelPortal:   A5FIL0
- SMR:   A5FIL0
- STRING:   A5FIL0
- GeneID:   5091669
- GenomeReviews:   CP000685_GR
- KEGG:   fjo:Fjoh_1933
- eggNOG:   NOG87974
- HOGENOM:   HBG708268
- OMA:   RKFDKTG
- ProtClustDB:   PRK00270
- BioCyc:   FJOH376686:FJOH_1933-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00358
- InterPro:   IPR001911
- PRINTS:   PR00976
- ProDom:   PD005521
- TIGRFAMs:   TIGR00030

Pfam domain/function: PF01165 Ribosomal_S21

EC number: NA

Molecular weight: Translated: 7418; Mature: 7418

Theoretical pI: Translated: 11.27; Mature: 11.27

Prosite motif: PS01181 RIBOSOMAL_S21

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIIPIKDGENIDRALKRYKRKFDKTGTVRQLRARTAFIKPSVVKRAQIQKAAYIQTLKD
CEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
SLES
HHCC
>Mature Secondary Structure
MLIIPIKDGENIDRALKRYKRKFDKTGTVRQLRARTAFIKPSVVKRAQIQKAAYIQTLKD
CEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
SLES
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA