| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146299660
Identifier: 146299660
GI number: 146299660
Start: 2196037
End: 2198355
Strand: Direct
Name: 146299660
Synonym: Fjoh_1900
Alternate gene names: NA
Gene position: 2196037-2198355 (Clockwise)
Preceding gene: 146299659
Following gene: 146299661
Centisome position: 36.02
GC content: 34.63
Gene sequence:
>2319_bases ATGAACAAAAAACATAATCATATAAATAATCATTTTGCAAAGTATTTTGTACTGCTATCCCTGTTTTTTGTTTTTGGATG CAGCAATACAAAATATCTTCCAGAAGGCGATTTGCTTTATACCGGCGGTTCTGTAAAAGTGAAAGATTCTATTATGAAAA AGAAAGATAGAAAAGCACTGCAAACCGAGCTGGAAGGTCTTCTTCGTCCAAAACCAAACAAAACATTTTTAGGATTACGT CCAAAATTATGGTTCTATAATATTGCAGGCGAACCAAAAAAACAAAAAGGATTTAGATACTGGCTTCGCACTAAGGTTGG AGAAGAGCCCGTGCTTTTTAGTAAAGTAGATTTAGATTATAATGCATCGGTTTTAAGAAATTTTACTGAAAACCGTGGTT TTTTTAAAACACGTGTAAGTGCTGATTCTACTGTTCGAAACAAAAGAGTTACAGCCGAATATACCGTTACGCCCAGAAAA CAATACAAAATTAAAAGCGTTATTTTTCCCGATGATTCACTCGCAATGTCCAGAATTATAGGAAGATCAAGCCGAAGAAG CCTGCTTAAAGTTGGAAATCCGTATGATCTGGATGTAATTAAATCCGAAAGAGAACGAATCGACGCCAGATTAAAAGAAA AAGGTTATTACTATTTTAACCCAGATTATATTTTGGCAAAAGTAGACAGCAGTAAAGGCGATCACGAAGTCAATATTAGA CTGGTAATAAAAGACGATACACCTGTAAAAGCACTTACAGCTTATAAAATTGATAAAATCTATGTATATCCCAATTATTC GCTGAACAATGACAGCATGGTTTACAGGAAAAAAAATATTCAGCAGTATAAAGATTTTACAATTATAGATACTGCAGAGA CTTTTAAGCCCAGAATTTATGACCGTACAATCTATTTTAAAAAAGGGGATTTGTATAATAGAAAAGATCACAATCTAACC TTAAACCGATTTGTAAATTTGGGAACTTTCAGTTTTGTAAAAAATGAATTTAAACCGTCAGATAGTATTAAAAATGCTTT GGATTCCTATTATTACCTCACACTTCTTCCTAAGAAATTTATTCGGGTTGAGGTTTTAGGAAAAACCAATTCAGCAAGTT ATACAGGAACAGAAGTAAATGTAAACTGGAATAATCGTAATTTCTTTCGCGGCGCAGAATTGTTCACTTTCTCAATTTTT GGAGGTGCCGATTTTCAGTTGGGCGGTGTAAACAAAGGAAAAAACATCTATAAACTTGGAGCTGAAACCAGTTTAACCTG GCCAAGATTTATTACGCCTTTTAATATTGAAGGAAACAGCGAATATGTGCCAAGAACTAAAGCAACATTACGTTATGAAT ATCAAAAACGTACACAATTGTATGCTTTAAATTCCTTTAATACCTCATTTGGATATTTATGGAAAGAAAACATTCGCAAA GAACATCAATTGAATGTAATAGATGTAACTTATGTGAGTCCAAATCATGTTACGCCAGAATATTTAGAAGATATTCAGGA AGATCCTGCTTTAGGAAAAGTAATTGAAAAACAATTGATTTTTGGTCCAACTTACAATTACACGTACACCAATACAATGC AAAAACGCCGAAAAAATACCATTTATTTTAATGGTGAATTAGATCTGGCAGGAAACATAACAGGATTAGTAACCGGTGCA GATTATCCAAATAATGTAAAAACGATATTTGATGTTCCGTTTAGCCAGTATGTCAAAATCAAATCAGATTTCAGACATTA TTTAAAGTTAGGAAAAGAAAGTGAACTCGCCAGCCGATTAATCGTAGGAGCCGGATTTGCATCCGGAAATTCGAATACAC TTCCTGCTTCAAAACAATTTGTGGTGGGGGGAACCAACAGTATTCGAGCTTTCAGAGCAAGAACTTTAGGGCCGGGAAGT TATGTGATTCCGGAAACGACTACAAATATTAATTACACACCAGATCAATCAGCCGATTTAAAATTGGAATTCAATACAGA ATATCGTGCAAAATTGTTTAGTATTGTGAGAGGCGCTGTATTTTTAGATGCAGGTAATATTTGGCTTTTACATGCCGATC CGGACAAACCCGGTGCCGAAATTTCAAAAGATTTCATGAAAGAACTTGCCGTTGGAGCAGGAGTAGGTCTGCGTTTTGAT TTATCATTCCTGATATTAAGAACTGATTTAGCCATGCCGCTTCGAAATCCTGCTTTGCCAGACGGACAAAGATGGGTAAT TGATGATATTAATTTTGGAAGCAGTTCCTGGAGAAAAGACAATCTGATTTTGAATATCGCTATTGGATATCCGTTTTAA
Upstream 100 bases:
>100_bases GAATTGATTCGAGAAGAAAAGCTTCGAAAAGAAAAGGAAAAACAGAAAAAAAAGGAAGACAAAGAGAAGGAGAAATTGCA GGAAAATCAAATTGAAGGAA
Downstream 100 bases:
>100_bases GTTTTTCGCCACGACTCGAGCGATAGCGAACAGGTGAAGCTATTCACGAATTCACACAATTTGCAGTTCGTTGAATTTTA ATTAATCGAATTTTTATATT
Product: surface antigen (D15)
Products: NA
Alternate protein names: Outer Membrane Protein; Lipoprotein; Surface Membrane Protein; OMP85 Family Outer Membrane Protein; Surface Antigen Protein
Number of amino acids: Translated: 772; Mature: 772
Protein sequence:
>772_residues MNKKHNHINNHFAKYFVLLSLFFVFGCSNTKYLPEGDLLYTGGSVKVKDSIMKKKDRKALQTELEGLLRPKPNKTFLGLR PKLWFYNIAGEPKKQKGFRYWLRTKVGEEPVLFSKVDLDYNASVLRNFTENRGFFKTRVSADSTVRNKRVTAEYTVTPRK QYKIKSVIFPDDSLAMSRIIGRSSRRSLLKVGNPYDLDVIKSERERIDARLKEKGYYYFNPDYILAKVDSSKGDHEVNIR LVIKDDTPVKALTAYKIDKIYVYPNYSLNNDSMVYRKKNIQQYKDFTIIDTAETFKPRIYDRTIYFKKGDLYNRKDHNLT LNRFVNLGTFSFVKNEFKPSDSIKNALDSYYYLTLLPKKFIRVEVLGKTNSASYTGTEVNVNWNNRNFFRGAELFTFSIF GGADFQLGGVNKGKNIYKLGAETSLTWPRFITPFNIEGNSEYVPRTKATLRYEYQKRTQLYALNSFNTSFGYLWKENIRK EHQLNVIDVTYVSPNHVTPEYLEDIQEDPALGKVIEKQLIFGPTYNYTYTNTMQKRRKNTIYFNGELDLAGNITGLVTGA DYPNNVKTIFDVPFSQYVKIKSDFRHYLKLGKESELASRLIVGAGFASGNSNTLPASKQFVVGGTNSIRAFRARTLGPGS YVIPETTTNINYTPDQSADLKLEFNTEYRAKLFSIVRGAVFLDAGNIWLLHADPDKPGAEISKDFMKELAVGAGVGLRFD LSFLILRTDLAMPLRNPALPDGQRWVIDDINFGSSSWRKDNLILNIAIGYPF
Sequences:
>Translated_772_residues MNKKHNHINNHFAKYFVLLSLFFVFGCSNTKYLPEGDLLYTGGSVKVKDSIMKKKDRKALQTELEGLLRPKPNKTFLGLR PKLWFYNIAGEPKKQKGFRYWLRTKVGEEPVLFSKVDLDYNASVLRNFTENRGFFKTRVSADSTVRNKRVTAEYTVTPRK QYKIKSVIFPDDSLAMSRIIGRSSRRSLLKVGNPYDLDVIKSERERIDARLKEKGYYYFNPDYILAKVDSSKGDHEVNIR LVIKDDTPVKALTAYKIDKIYVYPNYSLNNDSMVYRKKNIQQYKDFTIIDTAETFKPRIYDRTIYFKKGDLYNRKDHNLT LNRFVNLGTFSFVKNEFKPSDSIKNALDSYYYLTLLPKKFIRVEVLGKTNSASYTGTEVNVNWNNRNFFRGAELFTFSIF GGADFQLGGVNKGKNIYKLGAETSLTWPRFITPFNIEGNSEYVPRTKATLRYEYQKRTQLYALNSFNTSFGYLWKENIRK EHQLNVIDVTYVSPNHVTPEYLEDIQEDPALGKVIEKQLIFGPTYNYTYTNTMQKRRKNTIYFNGELDLAGNITGLVTGA DYPNNVKTIFDVPFSQYVKIKSDFRHYLKLGKESELASRLIVGAGFASGNSNTLPASKQFVVGGTNSIRAFRARTLGPGS YVIPETTTNINYTPDQSADLKLEFNTEYRAKLFSIVRGAVFLDAGNIWLLHADPDKPGAEISKDFMKELAVGAGVGLRFD LSFLILRTDLAMPLRNPALPDGQRWVIDDINFGSSSWRKDNLILNIAIGYPF >Mature_772_residues MNKKHNHINNHFAKYFVLLSLFFVFGCSNTKYLPEGDLLYTGGSVKVKDSIMKKKDRKALQTELEGLLRPKPNKTFLGLR PKLWFYNIAGEPKKQKGFRYWLRTKVGEEPVLFSKVDLDYNASVLRNFTENRGFFKTRVSADSTVRNKRVTAEYTVTPRK QYKIKSVIFPDDSLAMSRIIGRSSRRSLLKVGNPYDLDVIKSERERIDARLKEKGYYYFNPDYILAKVDSSKGDHEVNIR LVIKDDTPVKALTAYKIDKIYVYPNYSLNNDSMVYRKKNIQQYKDFTIIDTAETFKPRIYDRTIYFKKGDLYNRKDHNLT LNRFVNLGTFSFVKNEFKPSDSIKNALDSYYYLTLLPKKFIRVEVLGKTNSASYTGTEVNVNWNNRNFFRGAELFTFSIF GGADFQLGGVNKGKNIYKLGAETSLTWPRFITPFNIEGNSEYVPRTKATLRYEYQKRTQLYALNSFNTSFGYLWKENIRK EHQLNVIDVTYVSPNHVTPEYLEDIQEDPALGKVIEKQLIFGPTYNYTYTNTMQKRRKNTIYFNGELDLAGNITGLVTGA DYPNNVKTIFDVPFSQYVKIKSDFRHYLKLGKESELASRLIVGAGFASGNSNTLPASKQFVVGGTNSIRAFRARTLGPGS YVIPETTTNINYTPDQSADLKLEFNTEYRAKLFSIVRGAVFLDAGNIWLLHADPDKPGAEISKDFMKELAVGAGVGLRFD LSFLILRTDLAMPLRNPALPDGQRWVIDDINFGSSSWRKDNLILNIAIGYPF
Specific function: Unknown
COG id: COG0729
COG function: function code M; Outer membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 88652; Mature: 88652
Theoretical pI: Translated: 10.08; Mature: 10.08
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKKHNHINNHFAKYFVLLSLFFVFGCSNTKYLPEGDLLYTGGSVKVKDSIMKKKDRKAL CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCEEEHHHHHHHHHHHHH QTELEGLLRPKPNKTFLGLRPKLWFYNIAGEPKKQKGFRYWLRTKVGEEPVLFSKVDLDY HHHHHHHCCCCCCCEEEECCCCEEEEECCCCCCHHCCCEEEEECCCCCCCEEEEEECCCC NASVLRNFTENRGFFKTRVSADSTVRNKRVTAEYTVTPRKQYKIKSVIFPDDSLAMSRII CHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCHHHHHHHH GRSSRRSLLKVGNPYDLDVIKSERERIDARLKEKGYYYFNPDYILAKVDSSKGDHEVNIR CCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCEEEEEECCCCCCEEEEEE LVIKDDTPVKALTAYKIDKIYVYPNYSLNNDSMVYRKKNIQQYKDFTIIDTAETFKPRIY EEEECCCCCEEEEEEEEEEEEEEECCCCCCCCEEEEHHCHHHHCCEEEEECHHHCCCEEE DRTIYFKKGDLYNRKDHNLTLNRFVNLGTFSFVKNEFKPSDSIKNALDSYYYLTLLPKKF EEEEEEECCCCCCCCCCCEEHHHEEECCCHHHHHCCCCCCHHHHHHHHCEEEEEECCCCE IRVEVLGKTNSASYTGTEVNVNWNNRNFFRGAELFTFSIFGGADFQLGGVNKGKNIYKLG EEEEEEECCCCCCCCCCEEEEEECCCCEECCCEEEEEEEECCCCEEECCCCCCCCEEEEC AETSLTWPRFITPFNIEGNSEYVPRTKATLRYEYQKRTQLYALNSFNTSFGYLWKENIRK CCCCCCCCCEECEEEECCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCHHHHHHCCC EHQLNVIDVTYVSPNHVTPEYLEDIQEDPALGKVIEKQLIFGPTYNYTYTNTMQKRRKNT CCCCEEEEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHEECCCCCCEECHHHHHHCCCE IYFNGELDLAGNITGLVTGADYPNNVKTIFDVPFSQYVKIKSDFRHYLKLGKESELASRL EEECCEEEECCCEEEEEECCCCCCCCCEEEECCHHHHEEEHHHHHHHHHCCCHHHHHHEE IVGAGFASGNSNTLPASKQFVVGGTNSIRAFRARTLGPGSYVIPETTTNINYTPDQSADL EEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCEECCCCCCCCEECCCCCCEE KLEFNTEYRAKLFSIVRGAVFLDAGNIWLLHADPDKPGAEISKDFMKELAVGAGVGLRFD EEEECCHHHHHHHHHHHCEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEE LSFLILRTDLAMPLRNPALPDGQRWVIDDINFGSSSWRKDNLILNIAIGYPF EEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCC >Mature Secondary Structure MNKKHNHINNHFAKYFVLLSLFFVFGCSNTKYLPEGDLLYTGGSVKVKDSIMKKKDRKAL CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCEEEHHHHHHHHHHHHH QTELEGLLRPKPNKTFLGLRPKLWFYNIAGEPKKQKGFRYWLRTKVGEEPVLFSKVDLDY HHHHHHHCCCCCCCEEEECCCCEEEEECCCCCCHHCCCEEEEECCCCCCCEEEEEECCCC NASVLRNFTENRGFFKTRVSADSTVRNKRVTAEYTVTPRKQYKIKSVIFPDDSLAMSRII CHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCHHHHHHHH GRSSRRSLLKVGNPYDLDVIKSERERIDARLKEKGYYYFNPDYILAKVDSSKGDHEVNIR CCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCEEEEEECCCCCCEEEEEE LVIKDDTPVKALTAYKIDKIYVYPNYSLNNDSMVYRKKNIQQYKDFTIIDTAETFKPRIY EEEECCCCCEEEEEEEEEEEEEEECCCCCCCCEEEEHHCHHHHCCEEEEECHHHCCCEEE DRTIYFKKGDLYNRKDHNLTLNRFVNLGTFSFVKNEFKPSDSIKNALDSYYYLTLLPKKF EEEEEEECCCCCCCCCCCEEHHHEEECCCHHHHHCCCCCCHHHHHHHHCEEEEEECCCCE IRVEVLGKTNSASYTGTEVNVNWNNRNFFRGAELFTFSIFGGADFQLGGVNKGKNIYKLG EEEEEEECCCCCCCCCCEEEEEECCCCEECCCEEEEEEEECCCCEEECCCCCCCCEEEEC AETSLTWPRFITPFNIEGNSEYVPRTKATLRYEYQKRTQLYALNSFNTSFGYLWKENIRK CCCCCCCCCEECEEEECCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCHHHHHHCCC EHQLNVIDVTYVSPNHVTPEYLEDIQEDPALGKVIEKQLIFGPTYNYTYTNTMQKRRKNT CCCCEEEEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHEECCCCCCEECHHHHHHCCCE IYFNGELDLAGNITGLVTGADYPNNVKTIFDVPFSQYVKIKSDFRHYLKLGKESELASRL EEECCEEEECCCEEEEEECCCCCCCCCEEEECCHHHHEEEHHHHHHHHHCCCHHHHHHEE IVGAGFASGNSNTLPASKQFVVGGTNSIRAFRARTLGPGSYVIPETTTNINYTPDQSADL EEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCEECCCCCCCCEECCCCCCEE KLEFNTEYRAKLFSIVRGAVFLDAGNIWLLHADPDKPGAEISKDFMKELAVGAGVGLRFD EEEECCHHHHHHHHHHHCEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEE LSFLILRTDLAMPLRNPALPDGQRWVIDDINFGSSSWRKDNLILNIAIGYPF EEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA