BacMap

Definition	Flavobacterium johnsoniae UW101 chromosome, complete genome.
Accession	NC_009441
Length	6,096,872

Click here to switch to the map view.

The map label for this gene is yusZ [H]

Identifier: 146299600

GI number: 146299600

Start: 2120633

End: 2121472

Strand: Direct

Name: yusZ [H]

Synonym: Fjoh_1840

Alternate gene names: 146299600

Gene position: 2120633-2121472 (Clockwise)

Preceding gene: 146299599

Following gene: 146299611

Centisome position: 34.78

GC content: 34.64

Gene sequence:

>840_bases
ATGGACAATAACAAAGTTTGGTTTATCACAGGTGCTTCAAAAGGACTTGGATTAGAATTAGCTAAAAAATTATTAGCAGA
AGGTTTTAAAGTTGCTGCAACATCAAGAAGTGAAGAGGCTTTAGTAAAAGTATTAGGAAATTCATCTGAAAAATTTCTTC
CTCTTGAAATGGATTTAGTTGACGAGAAAAGTGTAAAAAGTGCAATCGACAAAACTATCAATCATTTTAAAACAATTGAT
GTTTTGGTAAATAATGCCGGTTATGGTTTATTGGGAGCATTGGAAGAATTAACAGACGCTGAATCAAGAAAAAACTACGA
AGTAAATGTTTTCGGATTATTGAATGTAATTAGAAATACAATGCCAATTCTTCGTGCAAACAAATCTGGACACATTTTTA
ATATTTCTTCTGTAGGAGGTTATTATGGGGAATTTCCAGGCTGGGGAATTTACTGTTCTACAAAATTTGCAGTTGCGGGT
TTAACAGAATCTTTAGCAGCAGAAGTAAAATCGTTTGGAGTTCATGCTACAATCGTGTATCCGGGTTATTTTAGAACTGA
TTTCTTAAAAGACAGTTCTTTATTACTGCCTCAAAACCCAATTGCAGATTATAAAGAAGTAAGACAATCTGAAAGCGCGC
ACAAGGAAGATATCAACCAAAATCAGCCGGGAGATCCTGTGAAATTAGCTGAAGCTTTGATTAAAGCAAGCGAGGATCAA
AATCCGCCTCTGCATTTGTTTTTAGGGGAAGATGCCTATAATATGGCAAACCAAAAAATAGCAAGTGTAAAAAGCGAATT
GGAAGCATGGAAAGAGGTTTCTGTTTCTACTGGTTTTTAA

Upstream 100 bases:

>100_bases
ATTGTTTGATTTTTGTAACTTCTTGTTTGATTGTTTCAATGTTTAAGAAGCACTTCACCAATACCTTTGTCCTGTAATTA
ATAACGTAAAAATTAAAATC

Downstream 100 bases:

>100_bases
TTAGATAATGATATTTATAACGATTGGTGTTAATTTATCCAAATAGTAAACCCGACAGGTATTTAAAACCTGTCGGGTTT
GTTGTGTTTATAAGTTTGTC

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: ORFA [H]

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MDNNKVWFITGASKGLGLELAKKLLAEGFKVAATSRSEEALVKVLGNSSEKFLPLEMDLVDEKSVKSAIDKTINHFKTID
VLVNNAGYGLLGALEELTDAESRKNYEVNVFGLLNVIRNTMPILRANKSGHIFNISSVGGYYGEFPGWGIYCSTKFAVAG
LTESLAAEVKSFGVHATIVYPGYFRTDFLKDSSLLLPQNPIADYKEVRQSESAHKEDINQNQPGDPVKLAEALIKASEDQ
NPPLHLFLGEDAYNMANQKIASVKSELEAWKEVSVSTGF

Sequences:

>Translated_279_residues
MDNNKVWFITGASKGLGLELAKKLLAEGFKVAATSRSEEALVKVLGNSSEKFLPLEMDLVDEKSVKSAIDKTINHFKTID
VLVNNAGYGLLGALEELTDAESRKNYEVNVFGLLNVIRNTMPILRANKSGHIFNISSVGGYYGEFPGWGIYCSTKFAVAG
LTESLAAEVKSFGVHATIVYPGYFRTDFLKDSSLLLPQNPIADYKEVRQSESAHKEDINQNQPGDPVKLAEALIKASEDQ
NPPLHLFLGEDAYNMANQKIASVKSELEAWKEVSVSTGF
>Mature_279_residues
MDNNKVWFITGASKGLGLELAKKLLAEGFKVAATSRSEEALVKVLGNSSEKFLPLEMDLVDEKSVKSAIDKTINHFKTID
VLVNNAGYGLLGALEELTDAESRKNYEVNVFGLLNVIRNTMPILRANKSGHIFNISSVGGYYGEFPGWGIYCSTKFAVAG
LTESLAAEVKSFGVHATIVYPGYFRTDFLKDSSLLLPQNPIADYKEVRQSESAHKEDINQNQPGDPVKLAEALIKASEDQ
NPPLHLFLGEDAYNMANQKIASVKSELEAWKEVSVSTGF

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI223718074, Length=270, Percent_Identity=30.7407407407407, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI40548397, Length=189, Percent_Identity=33.8624338624339, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI214010158, Length=189, Percent_Identity=33.8624338624339, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI214010156, Length=189, Percent_Identity=33.8624338624339, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI22758144, Length=189, Percent_Identity=33.8624338624339, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI7657478, Length=260, Percent_Identity=29.2307692307692, Blast_Score=98, Evalue=7e-21,
Organism=Homo sapiens, GI19743808, Length=187, Percent_Identity=33.1550802139037, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI150247226, Length=187, Percent_Identity=33.6898395721925, Blast_Score=95, Evalue=7e-20,
Organism=Homo sapiens, GI22507405, Length=190, Percent_Identity=33.6842105263158, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI119392083, Length=189, Percent_Identity=32.8042328042328, Blast_Score=91, Evalue=9e-19,
Organism=Homo sapiens, GI20149619, Length=195, Percent_Identity=30.2564102564103, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI31542939, Length=279, Percent_Identity=29.3906810035842, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI50726952, Length=195, Percent_Identity=32.3076923076923, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI40254992, Length=188, Percent_Identity=25.531914893617, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI109715829, Length=220, Percent_Identity=28.6363636363636, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI4503817, Length=181, Percent_Identity=28.1767955801105, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI224922801, Length=181, Percent_Identity=30.3867403314917, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI7706318, Length=193, Percent_Identity=29.0155440414508, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI59889578, Length=166, Percent_Identity=31.3253012048193, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI4758504, Length=199, Percent_Identity=29.1457286432161, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI157739938, Length=193, Percent_Identity=26.4248704663212, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI44680136, Length=205, Percent_Identity=28.2926829268293, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI44680133, Length=205, Percent_Identity=28.2926829268293, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI17738292, Length=205, Percent_Identity=28.2926829268293, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI66933014, Length=165, Percent_Identity=31.5151515151515, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI210032110, Length=217, Percent_Identity=26.2672811059908, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI142976729, Length=198, Percent_Identity=27.2727272727273, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI186928839, Length=208, Percent_Identity=26.9230769230769, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI10190704, Length=185, Percent_Identity=27.5675675675676, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI210032112, Length=145, Percent_Identity=30.3448275862069, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI5031737, Length=197, Percent_Identity=27.4111675126904, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI33667109, Length=197, Percent_Identity=27.4111675126904, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI40254986, Length=142, Percent_Identity=31.6901408450704, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI87082100, Length=186, Percent_Identity=33.3333333333333, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1787335, Length=189, Percent_Identity=31.7460317460317, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1786701, Length=186, Percent_Identity=30.6451612903226, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1786812, Length=185, Percent_Identity=27.5675675675676, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787820, Length=179, Percent_Identity=27.3743016759777, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI2367175, Length=191, Percent_Identity=27.2251308900524, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87082160, Length=238, Percent_Identity=27.3109243697479, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788459, Length=188, Percent_Identity=29.2553191489362, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17567345, Length=226, Percent_Identity=27.8761061946903, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71994604, Length=234, Percent_Identity=29.9145299145299, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17560676, Length=242, Percent_Identity=28.9256198347107, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17508895, Length=186, Percent_Identity=31.1827956989247, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI193204405, Length=243, Percent_Identity=28.3950617283951, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17562910, Length=238, Percent_Identity=27.7310924369748, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17560220, Length=247, Percent_Identity=30.3643724696356, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17570069, Length=194, Percent_Identity=33.5051546391753, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI115534660, Length=194, Percent_Identity=30.9278350515464, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71994600, Length=243, Percent_Identity=27.1604938271605, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17562906, Length=240, Percent_Identity=27.9166666666667, Blast_Score=75, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17562904, Length=242, Percent_Identity=28.099173553719, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17560332, Length=196, Percent_Identity=31.1224489795918, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71997402, Length=193, Percent_Identity=32.6424870466321, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17562908, Length=279, Percent_Identity=26.5232974910394, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17559104, Length=239, Percent_Identity=25.9414225941423, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=201, Percent_Identity=30.8457711442786, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17565030, Length=251, Percent_Identity=28.6852589641434, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI71982365, Length=148, Percent_Identity=31.0810810810811, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17538486, Length=202, Percent_Identity=28.2178217821782, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17538480, Length=241, Percent_Identity=29.4605809128631, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17507613, Length=197, Percent_Identity=28.4263959390863, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17561402, Length=188, Percent_Identity=30.3191489361702, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI32563809, Length=197, Percent_Identity=28.4263959390863, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=247, Percent_Identity=28.7449392712551, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17568967, Length=215, Percent_Identity=29.7674418604651, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17544670, Length=202, Percent_Identity=30.1980198019802, Blast_Score=64, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17531453, Length=204, Percent_Identity=30.8823529411765, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=199, Percent_Identity=31.6582914572864, Blast_Score=92, Evalue=7e-20,
Organism=Saccharomyces cerevisiae, GI6322067, Length=248, Percent_Identity=28.2258064516129, Blast_Score=83, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6322227, Length=200, Percent_Identity=27, Blast_Score=73, Evalue=5e-14,
Organism=Saccharomyces cerevisiae, GI6322226, Length=189, Percent_Identity=27.5132275132275, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=194, Percent_Identity=28.3505154639175, Blast_Score=62, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24643142, Length=212, Percent_Identity=31.1320754716981, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24580925, Length=203, Percent_Identity=31.5270935960591, Blast_Score=88, Evalue=7e-18,
Organism=Drosophila melanogaster, GI21358495, Length=191, Percent_Identity=30.3664921465969, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI24641232, Length=231, Percent_Identity=29.4372294372294, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI281364494, Length=227, Percent_Identity=31.2775330396476, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24663911, Length=201, Percent_Identity=29.3532338308458, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI116007236, Length=200, Percent_Identity=27.5, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI21356301, Length=181, Percent_Identity=30.3867403314917, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI28571526, Length=241, Percent_Identity=31.1203319502075, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI116007238, Length=181, Percent_Identity=27.6243093922652, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI21355319, Length=190, Percent_Identity=28.4210526315789, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24641388, Length=221, Percent_Identity=30.7692307692308, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24648944, Length=217, Percent_Identity=28.110599078341, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI17737361, Length=207, Percent_Identity=28.9855072463768, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21357673, Length=191, Percent_Identity=26.1780104712042, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24640492, Length=202, Percent_Identity=28.7128712871287, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28571387, Length=203, Percent_Identity=25.615763546798, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI23397609, Length=196, Percent_Identity=30.1020408163265, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI281364892, Length=226, Percent_Identity=25.6637168141593, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24644339, Length=241, Percent_Identity=28.6307053941909, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI221331218, Length=222, Percent_Identity=25.2252252252252, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24665243, Length=222, Percent_Identity=25.2252252252252, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI21357041, Length=195, Percent_Identity=30.2564102564103, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI221331216, Length=223, Percent_Identity=25.5605381165919, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24665247, Length=223, Percent_Identity=25.5605381165919, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24581726, Length=133, Percent_Identity=27.0676691729323, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24639444, Length=191, Percent_Identity=29.3193717277487, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 30568; Mature: 30568

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNNKVWFITGASKGLGLELAKKLLAEGFKVAATSRSEEALVKVLGNSSEKFLPLEMDLV
CCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHCCCCCCEEEEECCCC
DEKSVKSAIDKTINHFKTIDVLVNNAGYGLLGALEELTDAESRKNYEVNVFGLLNVIRNT
CHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHH
MPILRANKSGHIFNISSVGGYYGEFPGWGIYCSTKFAVAGLTESLAAEVKSFGVHATIVY
HHHEEECCCCCEEEECCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCEEEEEE
PGYFRTDFLKDSSLLLPQNPIADYKEVRQSESAHKEDINQNQPGDPVKLAEALIKASEDQ
CCCHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC
NPPLHLFLGEDAYNMANQKIASVKSELEAWKEVSVSTGF
CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDNNKVWFITGASKGLGLELAKKLLAEGFKVAATSRSEEALVKVLGNSSEKFLPLEMDLV
CCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHCCCCCCEEEEECCCC
DEKSVKSAIDKTINHFKTIDVLVNNAGYGLLGALEELTDAESRKNYEVNVFGLLNVIRNT
CHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHH
MPILRANKSGHIFNISSVGGYYGEFPGWGIYCSTKFAVAGLTESLAAEVKSFGVHATIVY
HHHEEECCCCCEEEECCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCEEEEEE
PGYFRTDFLKDSSLLLPQNPIADYKEVRQSESAHKEDINQNQPGDPVKLAEALIKASEDQ
CCCHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC
NPPLHLFLGEDAYNMANQKIASVKSELEAWKEVSVSTGF
CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353931; 9384377; 8396117 [H]