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The map label for this gene is xylR [C]

Identifier: 146299599

GI number: 146299599

Start: 2119633

End: 2120541

Strand: Direct

Name: xylR [C]

Synonym: Fjoh_1839

Alternate gene names: 146299599

Gene position: 2119633-2120541 (Clockwise)

Preceding gene: 146299598

Following gene: 146299600

Centisome position: 34.77

GC content: 33.33

Gene sequence:

>909_bases
ATGAAACTGACAGAAACTTTAGAAGATTTTTACACTGTAAAAATAAAAGGGATGCCCGAAAATCTTAAAAAAGAGATCGG
ACATTTTAATGTTTTTAAATTGGATGATTATATCGGGAGCACTTGTAATCCGTTGCCTTATACTAGAAAAGACTTTTATA
AAATAAGTTTGATCGTGGGCAGAAACAAAGTGCATTATGCTGATAAAGTTGTGGCAATCGAAGATCAGGCTTTGTTTTTT
GCGAATCCGCAGATTCCGTATAGCTGGGAACATATTGATGAGAATCAAACTGGATTTTTCTGCATTTTTACAGATGCTTT
CTTTAGCCAGTTTGGAAATTTAAAAGAATATCCTTTGTTTCAGCCCGGAGGTAATCCTGTTGTTCCGGTTTCTAAAGAAC
TGGCAGAATCTTTAAAAACAGTTTATCTTAGAATGCTGGAAGAAATCAATTCTGATTATGCTTTTAAATATGATGTACTC
CGAAATCTGGTTTTTGAAATTATTCACCTTGCACTTAAAACGCAGACTGTAACTGCTTCATTATACAGTAAATCAAATGC
TACAATTCGAGTTTCTTCTTTATTTCTGGAGCTGCTAGAACGTCAGTTTCCAATAGAATCGATTACGCAGCAAATTAATT
TTCGTTCGCCTTCAGAATATGCCAATCAGTTAAATGTGCATGTCAATCACTTGAATAAAGCATTAAAAGAAACAACGGGA
AAAACAACTTCACAGATTATTTCTGAAAGAATTATTCAGGAAGCAATGATTCTGCTAAAACAAACCAATTGGAATATTAA
TGAAATTGCGTGGTGTTTAGGCTTCGAAGAATTGTCTCATTTTATTAATTTCTTCAAGAAAAATGTTCAGGTTTCGCCTA
AAAACTATCGTTTAGCAGAAATTGTTTGA

Upstream 100 bases:

>100_bases
ACGTGCTAATTGCAGTGCCCTTCGACTTCGCTCAAGAGGACAATCACTTCATTATTAAATTATCTAATTAACTAAAGATT
GATTTTTGTAACTTTGCAAA

Downstream 100 bases:

>100_bases
TTTTTGTAACTTCTTGTTTGATTGTTTCAATGTTTAAGAAGCACTTCACCAATACCTTTGTCCTGTAATTAATAACGTAA
AAATTAAAATCATGGACAAT

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator Arac Family; Transcriptional Regulator; AraC-Type Transcription Regulator; AraC-Family Regulatory Protein; Bacterial Regulatory Helix-Turn-Helix Protein; Helix-Turn-Helix- Domain Containing Protein AraC Type; Regulatory Protein

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MKLTETLEDFYTVKIKGMPENLKKEIGHFNVFKLDDYIGSTCNPLPYTRKDFYKISLIVGRNKVHYADKVVAIEDQALFF
ANPQIPYSWEHIDENQTGFFCIFTDAFFSQFGNLKEYPLFQPGGNPVVPVSKELAESLKTVYLRMLEEINSDYAFKYDVL
RNLVFEIIHLALKTQTVTASLYSKSNATIRVSSLFLELLERQFPIESITQQINFRSPSEYANQLNVHVNHLNKALKETTG
KTTSQIISERIIQEAMILLKQTNWNINEIAWCLGFEELSHFINFFKKNVQVSPKNYRLAEIV

Sequences:

>Translated_302_residues
MKLTETLEDFYTVKIKGMPENLKKEIGHFNVFKLDDYIGSTCNPLPYTRKDFYKISLIVGRNKVHYADKVVAIEDQALFF
ANPQIPYSWEHIDENQTGFFCIFTDAFFSQFGNLKEYPLFQPGGNPVVPVSKELAESLKTVYLRMLEEINSDYAFKYDVL
RNLVFEIIHLALKTQTVTASLYSKSNATIRVSSLFLELLERQFPIESITQQINFRSPSEYANQLNVHVNHLNKALKETTG
KTTSQIISERIIQEAMILLKQTNWNINEIAWCLGFEELSHFINFFKKNVQVSPKNYRLAEIV
>Mature_302_residues
MKLTETLEDFYTVKIKGMPENLKKEIGHFNVFKLDDYIGSTCNPLPYTRKDFYKISLIVGRNKVHYADKVVAIEDQALFF
ANPQIPYSWEHIDENQTGFFCIFTDAFFSQFGNLKEYPLFQPGGNPVVPVSKELAESLKTVYLRMLEEINSDYAFKYDVL
RNLVFEIIHLALKTQTVTASLYSKSNATIRVSSLFLELLERQFPIESITQQINFRSPSEYANQLNVHVNHLNKALKETTG
KTTSQIISERIIQEAMILLKQTNWNINEIAWCLGFEELSHFINFFKKNVQVSPKNYRLAEIV

Specific function: Regulatory Protein For The Xylbafghr Operon. [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35022; Mature: 35022

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLTETLEDFYTVKIKGMPENLKKEIGHFNVFKLDDYIGSTCNPLPYTRKDFYKISLIVG
CCHHHHHHCEEEEEEECCCHHHHHHCCCCEEEEEHHHHCCCCCCCCCCCCCEEEEEEEEE
RNKVHYADKVVAIEDQALFFANPQIPYSWEHIDENQTGFFCIFTDAFFSQFGNLKEYPLF
CCCEEECCEEEEEECCEEEEECCCCCCCHHCCCCCCCCEEEEEHHHHHHHHCCCCCCCCC
QPGGNPVVPVSKELAESLKTVYLRMLEEINSDYAFKYDVLRNLVFEIIHLALKTQTVTAS
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHH
LYSKSNATIRVSSLFLELLERQFPIESITQQINFRSPSEYANQLNVHVNHLNKALKETTG
HHCCCCCEEEHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
KTTSQIISERIIQEAMILLKQTNWNINEIAWCLGFEELSHFINFFKKNVQVSPKNYRLAE
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCEEHC
IV
CC
>Mature Secondary Structure
MKLTETLEDFYTVKIKGMPENLKKEIGHFNVFKLDDYIGSTCNPLPYTRKDFYKISLIVG
CCHHHHHHCEEEEEEECCCHHHHHHCCCCEEEEEHHHHCCCCCCCCCCCCCEEEEEEEEE
RNKVHYADKVVAIEDQALFFANPQIPYSWEHIDENQTGFFCIFTDAFFSQFGNLKEYPLF
CCCEEECCEEEEEECCEEEEECCCCCCCHHCCCCCCCCEEEEEHHHHHHHHCCCCCCCCC
QPGGNPVVPVSKELAESLKTVYLRMLEEINSDYAFKYDVLRNLVFEIIHLALKTQTVTAS
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHH
LYSKSNATIRVSSLFLELLERQFPIESITQQINFRSPSEYANQLNVHVNHLNKALKETTG
HHCCCCCEEEHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
KTTSQIISERIIQEAMILLKQTNWNINEIAWCLGFEELSHFINFFKKNVQVSPKNYRLAE
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCEEHC
IV
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA