Click here to switch to the map view.

The map label for this gene is yrdA [C]

Identifier: 146299438

GI number: 146299438

Start: 1947105

End: 1947623

Strand: Direct

Name: yrdA [C]

Synonym: Fjoh_1678

Alternate gene names: 146299438

Gene position: 1947105-1947623 (Clockwise)

Preceding gene: 146299437

Following gene: 146299445

Centisome position: 31.94

GC content: 36.42

Gene sequence:

>519_bases
ATGGTTATAAAATCTGTAAACGGAAAAGCACCTTCAATACCACAAGATTGTTATGTTGCTGAAAATGCAACAATTGTCGG
CGATGTTTCTTTTGGAGATTCTTGCAGCGTGTGGTTTAATGCTGTGGTTCGCGGAGATGTTCACTTTATTAAGATAGGAA
ACAAAGTAAACATTCAGGATGGAGCCGTAATTCATTGCACTTATCAAAAACACCCAACTATTATAGGAAACAATGTTTCA
ATTGGTCATAATGCGATTGTTCACGGATGCACGATTCATGACAATGTATTAATAGGAATGGGGGCTATTGTAATGGATAA
CTGCGTTGTTGAAAGTAATTCGATTATTGCAGCCGGAGCTGTTTTAACTCAAAATACTGTTGTTCCTTCGGGGACTATTT
TTGCAGGTGTTCCAGCTAAAAAAGTAAAAGACATTGATCAATCTGATTTTGCAGGCGAAATCGAACGTATTTCGAACAAT
TATGTAATGTATTCAGGATGGTTTAAAAACGAAGAATAA

Upstream 100 bases:

>100_bases
TGATACTGGCGGTTATCACCAGATTACTTTAGGAATTAATTTATTTTGCAGAAAAGAGCGTTACGATTGTAATTGCCCTG
CAGTTAATTAAAAAAATATT

Downstream 100 bases:

>100_bases
AATACAAATTCCAAATTCCAATAGTATTGATGCTTTATTGGAATTTGGTCTCGATAGCTATCGGGATTATTTTGAAGTTT
TTATAAACTTATAAATTGAT

Product: carbonic anhydrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MVIKSVNGKAPSIPQDCYVAENATIVGDVSFGDSCSVWFNAVVRGDVHFIKIGNKVNIQDGAVIHCTYQKHPTIIGNNVS
IGHNAIVHGCTIHDNVLIGMGAIVMDNCVVESNSIIAAGAVLTQNTVVPSGTIFAGVPAKKVKDIDQSDFAGEIERISNN
YVMYSGWFKNEE

Sequences:

>Translated_172_residues
MVIKSVNGKAPSIPQDCYVAENATIVGDVSFGDSCSVWFNAVVRGDVHFIKIGNKVNIQDGAVIHCTYQKHPTIIGNNVS
IGHNAIVHGCTIHDNVLIGMGAIVMDNCVVESNSIIAAGAVLTQNTVVPSGTIFAGVPAKKVKDIDQSDFAGEIERISNN
YVMYSGWFKNEE
>Mature_172_residues
MVIKSVNGKAPSIPQDCYVAENATIVGDVSFGDSCSVWFNAVVRGDVHFIKIGNKVNIQDGAVIHCTYQKHPTIIGNNVS
IGHNAIVHGCTIHDNVLIGMGAIVMDNCVVESNSIIAAGAVLTQNTVVPSGTIFAGVPAKKVKDIDQSDFAGEIERISNN
YVMYSGWFKNEE

Specific function: Unknown

COG id: COG0663

COG function: function code R; Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gamma-class carbonic anhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082240, Length=176, Percent_Identity=34.0909090909091, Blast_Score=136, Evalue=9e-34,
Organism=Escherichia coli, GI1787667, Length=151, Percent_Identity=36.4238410596026, Blast_Score=112, Evalue=1e-26,
Organism=Escherichia coli, GI87081681, Length=150, Percent_Identity=31.3333333333333, Blast_Score=83, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001451
- InterPro:   IPR011004 [H]

Pfam domain/function: PF00132 Hexapep [H]

EC number: NA

Molecular weight: Translated: 18378; Mature: 18378

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIKSVNGKAPSIPQDCYVAENATIVGDVSFGDSCSVWFNAVVRGDVHFIKIGNKVNIQD
CEEECCCCCCCCCCCCEEEECCCEEEEECCCCCCCCEEEEEEEECCEEEEEECCEEECCC
GAVIHCTYQKHPTIIGNNVSIGHNAIVHGCTIHDNVLIGMGAIVMDNCVVESNSIIAAGA
CEEEEEEECCCCEEEECCEEECCCEEEEEEEECCCEEEECCHHHCCCEEEECCCEEEECE
VLTQNTVVPSGTIFAGVPAKKVKDIDQSDFAGEIERISNNYVMYSGWFKNEE
EEECCEECCCCCEEECCCHHHHHCCCCCCCCHHHHHHCCCEEEEEEEECCCC
>Mature Secondary Structure
MVIKSVNGKAPSIPQDCYVAENATIVGDVSFGDSCSVWFNAVVRGDVHFIKIGNKVNIQD
CEEECCCCCCCCCCCCEEEECCCEEEEECCCCCCCCEEEEEEEECCEEEEEECCEEECCC
GAVIHCTYQKHPTIIGNNVSIGHNAIVHGCTIHDNVLIGMGAIVMDNCVVESNSIIAAGA
CEEEEEEECCCCEEEECCEEECCCEEEEEEEECCCEEEECCHHHCCCEEEECCCEEEECE
VLTQNTVVPSGTIFAGVPAKKVKDIDQSDFAGEIERISNNYVMYSGWFKNEE
EEECCEECCCCCEEECCCHHHHHCCCCCCCCHHHHHHCCCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]