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The map label for this gene is ycbB [H]

Identifier: 146299088

GI number: 146299088

Start: 1517658

End: 1519277

Strand: Direct

Name: ycbB [H]

Synonym: Fjoh_1328

Alternate gene names: 146299088

Gene position: 1517658-1519277 (Clockwise)

Preceding gene: 146299083

Following gene: 146299092

Centisome position: 24.89

GC content: 32.84

Gene sequence:

>1620_bases
ATGCGAAATTTTACTTTTTTATCTGTAATTGCTGCTTGTAGTTTTTTAATGTTTTCTTTTACCCCGGCAAGCAATACTCT
TAAATTTAAAAACGAGATCAACGAATTTGATAACATTTTAAATGTCAAGACAACTATTGTTTTTGGAACAATTGATGCTG
CTTCTATTAATTCTTTTTATAAAAAATATCCCAAACTAAAAAAATATCAAAAAGATGTTGAAGATCTTTATAAAAAGAAA
GACTATAATACCATTTGGTACGACGATAAAAGTGTCAGCGAATTTGGAGCACTTTTGTATCACAAAGTCAGCCTTCTAGA
AGATCAGGGAATAAATGCCGAAATGCCCTATATGGACTTGGTTGATGATGTTTTTAATGAAAACGTTACAAACAAACTTC
CTAAAGCAGATACAGAATTGTTATTGTCTAATATGTATGTTTTTTATGCCAGTAACGTTTATTCTGGTGTCGATCCGCAG
ACTTTGAAATCAATTGGCTGGTTTCTGCCAACAAAAACCATTTCTTATGATAGGATTTTAGATTCATTAATGGGCGATCC
AAACCGTTTAAATAAAGATGAAAACCTTCTTTTTAGTCAGTATTATAAACTTCAAAATGTATTGCAGAGATACCGAAACA
TTGAAAAAAACGGGCTTTGGAAAAAAATTGAAATCGACGAAGCTAATTACAAAGAATTAAAACCTTTAGACAGCGGTAAA
GTTGTCCAGCAAATTAGAGAACGCTTATTTGTCGTTGGCGATTTAAAAGAAGATTCAAAAAGCCAGTATTATGATCAGGA
AATGATGGATGCTGTTTTAAAGTATAAAAAACGATATGGACTAAAATTGAATTATACTTTTACGAAAGAGCAGATAGATC
AAATGAACGAACCAATCAGCAACAGAATTAGAACTATTATGCTGAATATGGAACGATGCAGATGGATTCCGACTAAACTA
GCCAAAGCAGATGAATATGTAATGGTTAATATTCCTTCGTTCAGGCTGATTTATGTTAAGGATGGAAAATATGATTTAGT
TTCGGACGTTTTTGTGGGAACCCGAATGACAGAAACCGTAATTTTTAGCGGCAATATTGACCGAATTGTTTTCAGCCCTT
ATTGGTATGTTCCGGCAAGTATTATTAAAAATGAGCTGAAACTTAAAATGGCCGAAGATAAAAATTACCTTGCAGATCAT
AATATGGAGTGGAATGGCGGAAGTGTAAGACAAAAGCCAGGTCCTAATAACTCTTTAGGGTTAGTAAAATTTATGTTTCC
TAATCCAAACGATATTTATCTGCATGATACACCGGCAAAAAGTTTGTTTGATTTTGAAAAAAGAACCTTCAGCCACGGAT
GTATTAATGTTAGAGATGCTAAAAAATTAGCATTAGAAATACTAAAAGACAATCCAGACTGGCCTGTTGATAAAATAAAT
GATGCTATGAGCGGTGAAAAAGAAACTACCTGCATGCTCAAAAATAAAATTCCAATTTATATAGGTTATTTTACAGCCTG
GGTTACAGACGACGGCGAAATTGGTTTTTATCCTGATGTTTACGATCGTGATAAGCAATTAGATAAACTTTTGTATGGCG
ATTCTGTTGCCCTAAAATAA

Upstream 100 bases:

>100_bases
ATAAAACAAAAAAGTTATGAAAACTTATTTTGGAGCTTCATTATGAGTTTTCGGTATTTTTTAAAATAATTTTTGTTTAA
AAAATTTAAAACTTAAAAAT

Downstream 100 bases:

>100_bases
AAAAGAAACCCTCGTTAGAATTAATTTTCAGCGAGGGTTTTTTAAAAAAATGGTCTACAAGTTATTCATATTTTAAATAT
TTCAAAACATCGATTTTAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 539; Mature: 539

Protein sequence:

>539_residues
MRNFTFLSVIAACSFLMFSFTPASNTLKFKNEINEFDNILNVKTTIVFGTIDAASINSFYKKYPKLKKYQKDVEDLYKKK
DYNTIWYDDKSVSEFGALLYHKVSLLEDQGINAEMPYMDLVDDVFNENVTNKLPKADTELLLSNMYVFYASNVYSGVDPQ
TLKSIGWFLPTKTISYDRILDSLMGDPNRLNKDENLLFSQYYKLQNVLQRYRNIEKNGLWKKIEIDEANYKELKPLDSGK
VVQQIRERLFVVGDLKEDSKSQYYDQEMMDAVLKYKKRYGLKLNYTFTKEQIDQMNEPISNRIRTIMLNMERCRWIPTKL
AKADEYVMVNIPSFRLIYVKDGKYDLVSDVFVGTRMTETVIFSGNIDRIVFSPYWYVPASIIKNELKLKMAEDKNYLADH
NMEWNGGSVRQKPGPNNSLGLVKFMFPNPNDIYLHDTPAKSLFDFEKRTFSHGCINVRDAKKLALEILKDNPDWPVDKIN
DAMSGEKETTCMLKNKIPIYIGYFTAWVTDDGEIGFYPDVYDRDKQLDKLLYGDSVALK

Sequences:

>Translated_539_residues
MRNFTFLSVIAACSFLMFSFTPASNTLKFKNEINEFDNILNVKTTIVFGTIDAASINSFYKKYPKLKKYQKDVEDLYKKK
DYNTIWYDDKSVSEFGALLYHKVSLLEDQGINAEMPYMDLVDDVFNENVTNKLPKADTELLLSNMYVFYASNVYSGVDPQ
TLKSIGWFLPTKTISYDRILDSLMGDPNRLNKDENLLFSQYYKLQNVLQRYRNIEKNGLWKKIEIDEANYKELKPLDSGK
VVQQIRERLFVVGDLKEDSKSQYYDQEMMDAVLKYKKRYGLKLNYTFTKEQIDQMNEPISNRIRTIMLNMERCRWIPTKL
AKADEYVMVNIPSFRLIYVKDGKYDLVSDVFVGTRMTETVIFSGNIDRIVFSPYWYVPASIIKNELKLKMAEDKNYLADH
NMEWNGGSVRQKPGPNNSLGLVKFMFPNPNDIYLHDTPAKSLFDFEKRTFSHGCINVRDAKKLALEILKDNPDWPVDKIN
DAMSGEKETTCMLKNKIPIYIGYFTAWVTDDGEIGFYPDVYDRDKQLDKLLYGDSVALK
>Mature_539_residues
MRNFTFLSVIAACSFLMFSFTPASNTLKFKNEINEFDNILNVKTTIVFGTIDAASINSFYKKYPKLKKYQKDVEDLYKKK
DYNTIWYDDKSVSEFGALLYHKVSLLEDQGINAEMPYMDLVDDVFNENVTNKLPKADTELLLSNMYVFYASNVYSGVDPQ
TLKSIGWFLPTKTISYDRILDSLMGDPNRLNKDENLLFSQYYKLQNVLQRYRNIEKNGLWKKIEIDEANYKELKPLDSGK
VVQQIRERLFVVGDLKEDSKSQYYDQEMMDAVLKYKKRYGLKLNYTFTKEQIDQMNEPISNRIRTIMLNMERCRWIPTKL
AKADEYVMVNIPSFRLIYVKDGKYDLVSDVFVGTRMTETVIFSGNIDRIVFSPYWYVPASIIKNELKLKMAEDKNYLADH
NMEWNGGSVRQKPGPNNSLGLVKFMFPNPNDIYLHDTPAKSLFDFEKRTFSHGCINVRDAKKLALEILKDNPDWPVDKIN
DAMSGEKETTCMLKNKIPIYIGYFTAWVTDDGEIGFYPDVYDRDKQLDKLLYGDSVALK

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=285, Percent_Identity=31.2280701754386, Blast_Score=148, Evalue=8e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 62831; Mature: 62831

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNFTFLSVIAACSFLMFSFTPASNTLKFKNEINEFDNILNVKTTIVFGTIDAASINSFY
CCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHEEEEEEEEECCCHHHHHHHH
KKYPKLKKYQKDVEDLYKKKDYNTIWYDDKSVSEFGALLYHKVSLLEDQGINAEMPYMDL
HHCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
VDDVFNENVTNKLPKADTELLLSNMYVFYASNVYSGVDPQTLKSIGWFLPTKTISYDRIL
HHHHHCCCHHHCCCCHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHCCCCCCCHHHHH
DSLMGDPNRLNKDENLLFSQYYKLQNVLQRYRNIEKNGLWKKIEIDEANYKELKPLDSGK
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHCCCEEEEEECCCCHHHCCCCCCCH
VVQQIRERLFVVGDLKEDSKSQYYDQEMMDAVLKYKKRYGLKLNYTFTKEQIDQMNEPIS
HHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCHHH
NRIRTIMLNMERCRWIPTKLAKADEYVMVNIPSFRLIYVKDGKYDLVSDVFVGTRMTETV
HHHHHHEEEHHHHHCCHHHHCCCCCEEEEECCCEEEEEEECCCCHHHHHHHHCCCEEEEE
IFSGNIDRIVFSPYWYVPASIIKNELKLKMAEDKNYLADHNMEWNGGSVRQKPGPNNSLG
EEECCCCEEEECCCHHCCHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCE
LVKFMFPNPNDIYLHDTPAKSLFDFEKRTFSHGCINVRDAKKLALEILKDNPDWPVDKIN
EEEEECCCCCEEEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHH
DAMSGEKETTCMLKNKIPIYIGYFTAWVTDDGEIGFYPDVYDRDKQLDKLLYGDSVALK
HHHCCCCCCEEEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MRNFTFLSVIAACSFLMFSFTPASNTLKFKNEINEFDNILNVKTTIVFGTIDAASINSFY
CCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHEEEEEEEEECCCHHHHHHHH
KKYPKLKKYQKDVEDLYKKKDYNTIWYDDKSVSEFGALLYHKVSLLEDQGINAEMPYMDL
HHCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
VDDVFNENVTNKLPKADTELLLSNMYVFYASNVYSGVDPQTLKSIGWFLPTKTISYDRIL
HHHHHCCCHHHCCCCHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHCCCCCCCHHHHH
DSLMGDPNRLNKDENLLFSQYYKLQNVLQRYRNIEKNGLWKKIEIDEANYKELKPLDSGK
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHCCCEEEEEECCCCHHHCCCCCCCH
VVQQIRERLFVVGDLKEDSKSQYYDQEMMDAVLKYKKRYGLKLNYTFTKEQIDQMNEPIS
HHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCHHH
NRIRTIMLNMERCRWIPTKLAKADEYVMVNIPSFRLIYVKDGKYDLVSDVFVGTRMTETV
HHHHHHEEEHHHHHCCHHHHCCCCCEEEEECCCEEEEEEECCCCHHHHHHHHCCCEEEEE
IFSGNIDRIVFSPYWYVPASIIKNELKLKMAEDKNYLADHNMEWNGGSVRQKPGPNNSLG
EEECCCCEEEECCCHHCCHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCE
LVKFMFPNPNDIYLHDTPAKSLFDFEKRTFSHGCINVRDAKKLALEILKDNPDWPVDKIN
EEEEECCCCCEEEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHH
DAMSGEKETTCMLKNKIPIYIGYFTAWVTDDGEIGFYPDVYDRDKQLDKLLYGDSVALK
HHHCCCCCCEEEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]