BacMap

Definition	Flavobacterium johnsoniae UW101 chromosome, complete genome.
Accession	NC_009441
Length	6,096,872

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The map label for this gene is rbpA [H]

Identifier: 146299063

GI number: 146299063

Start: 1486084

End: 1486428

Strand: Direct

Name: rbpA [H]

Synonym: Fjoh_1303

Alternate gene names: 146299063

Gene position: 1486084-1486428 (Clockwise)

Preceding gene: 146299062

Following gene: 146299070

Centisome position: 24.37

GC content: 39.42

Gene sequence:

>345_bases
ATGAATATTTTCGTTGGAAGCCTTCCATTCAGTATTGAGGAAGCAGATTTAAGAGAGTCTTTTGAGGCTTATGGAACAGT
TGACTCTGTTAAAATTATTACTGATAAATTTACTGGAAGAAGTAAAGGCTTTGGTTTTGTTGAAATGCCAAATGATAGCG
AAGCTCAGAAAGCTATCGACGAATTGAACGGTGCTGTTGTTTCAGGTCGTACAATCGTTGTAAATAAATCTGAGCCAAAA
CCAGAAGGCGAAAGAAGAAGTTTTAATAACAACCGCGGAGGAAACGATCGTGGTGGTTACGGAAACAACCGTGGCGGAGA
TCGCGGAAACAGAAGAGAATATTAA

Upstream 100 bases:

>100_bases
GATCAGTGCTTTTAAATCTAAATAAAAACTTAAATAAACTAATATATAGTAGATTACAGAAAAATAAGACTACATTTGTC
GTTATTATAAAAAAGTATCT

Downstream 100 bases:

>100_bases
TGTTTTTTTTCTAAAATATAAAAGGGATCAACGAAAGTTGATCCCTTTTTTTATGTTGTTTTTATTTCAGGTTTTAAGTT
TCAGGTTGTTGTAATGGTAA

Product: RNP-1 like RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MNIFVGSLPFSIEEADLRESFEAYGTVDSVKIITDKFTGRSKGFGFVEMPNDSEAQKAIDELNGAVVSGRTIVVNKSEPK
PEGERRSFNNNRGGNDRGGYGNNRGGDRGNRREY

Sequences:

>Translated_114_residues
MNIFVGSLPFSIEEADLRESFEAYGTVDSVKIITDKFTGRSKGFGFVEMPNDSEAQKAIDELNGAVVSGRTIVVNKSEPK
PEGERRSFNNNRGGNDRGGYGNNRGGDRGNRREY
>Mature_114_residues
MNIFVGSLPFSIEEADLRESFEAYGTVDSVKIITDKFTGRSKGFGFVEMPNDSEAQKAIDELNGAVVSGRTIVVNKSEPK
PEGERRSFNNNRGGNDRGGYGNNRGGDRGNRREY

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI4757926, Length=74, Percent_Identity=43.2432432432432, Blast_Score=69, Evalue=9e-13,
Organism=Homo sapiens, GI35493811, Length=74, Percent_Identity=43.2432432432432, Blast_Score=69, Evalue=9e-13,
Organism=Homo sapiens, GI116734696, Length=74, Percent_Identity=41.8918918918919, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI116734694, Length=74, Percent_Identity=41.8918918918919, Blast_Score=67, Evalue=4e-12,
Organism=Homo sapiens, GI116734698, Length=74, Percent_Identity=41.8918918918919, Blast_Score=66, Evalue=5e-12,
Organism=Homo sapiens, GI4502847, Length=93, Percent_Identity=36.5591397849462, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI188219591, Length=90, Percent_Identity=32.2222222222222, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI188219593, Length=90, Percent_Identity=32.2222222222222, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI34577105, Length=74, Percent_Identity=40.5405405405405, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI221139802, Length=76, Percent_Identity=39.4736842105263, Blast_Score=63, Evalue=5e-11,
Organism=Homo sapiens, GI185135971, Length=81, Percent_Identity=38.2716049382716, Blast_Score=62, Evalue=6e-11,
Organism=Homo sapiens, GI46367787, Length=81, Percent_Identity=37.037037037037, Blast_Score=62, Evalue=7e-11,
Organism=Homo sapiens, GI38201714, Length=81, Percent_Identity=38.2716049382716, Blast_Score=62, Evalue=7e-11,
Organism=Homo sapiens, GI4507499, Length=90, Percent_Identity=33.3333333333333, Blast_Score=62, Evalue=8e-11,
Organism=Homo sapiens, GI77695912, Length=90, Percent_Identity=33.3333333333333, Blast_Score=62, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17537143, Length=81, Percent_Identity=44.4444444444444, Blast_Score=72, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI32564504, Length=81, Percent_Identity=40.7407407407407, Blast_Score=72, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI32564506, Length=81, Percent_Identity=40.7407407407407, Blast_Score=72, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17531965, Length=81, Percent_Identity=40.7407407407407, Blast_Score=71, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17531963, Length=81, Percent_Identity=40.7407407407407, Blast_Score=71, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17508587, Length=80, Percent_Identity=38.75, Blast_Score=69, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=37.6623376623377, Blast_Score=66, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=36.3636363636364, Blast_Score=65, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI193209459, Length=108, Percent_Identity=32.4074074074074, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=38.1578947368421, Blast_Score=62, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6321599, Length=91, Percent_Identity=40.6593406593407, Blast_Score=67, Evalue=9e-13,
Organism=Saccharomyces cerevisiae, GI6321689, Length=95, Percent_Identity=36.8421052631579, Blast_Score=64, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24582417, Length=104, Percent_Identity=38.4615384615385, Blast_Score=74, Evalue=1e-14,
Organism=Drosophila melanogaster, GI45550943, Length=104, Percent_Identity=38.4615384615385, Blast_Score=74, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24582419, Length=104, Percent_Identity=38.4615384615385, Blast_Score=74, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24582423, Length=104, Percent_Identity=38.4615384615385, Blast_Score=74, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24582421, Length=104, Percent_Identity=38.4615384615385, Blast_Score=74, Evalue=1e-14,
Organism=Drosophila melanogaster, GI19920866, Length=104, Percent_Identity=38.4615384615385, Blast_Score=74, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24582412, Length=104, Percent_Identity=38.4615384615385, Blast_Score=74, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24650782, Length=86, Percent_Identity=37.2093023255814, Blast_Score=67, Evalue=3e-12,
Organism=Drosophila melanogaster, GI161078702, Length=86, Percent_Identity=37.2093023255814, Blast_Score=67, Evalue=3e-12,
Organism=Drosophila melanogaster, GI281362714, Length=86, Percent_Identity=37.2093023255814, Blast_Score=67, Evalue=3e-12,
Organism=Drosophila melanogaster, GI221330653, Length=81, Percent_Identity=39.5061728395062, Blast_Score=66, Evalue=5e-12,
Organism=Drosophila melanogaster, GI19549688, Length=81, Percent_Identity=39.5061728395062, Blast_Score=66, Evalue=5e-12,
Organism=Drosophila melanogaster, GI19549694, Length=81, Percent_Identity=39.5061728395062, Blast_Score=66, Evalue=5e-12,
Organism=Drosophila melanogaster, GI221330652, Length=81, Percent_Identity=39.5061728395062, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI62471589, Length=81, Percent_Identity=39.5061728395062, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI19549692, Length=81, Percent_Identity=39.5061728395062, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI19549690, Length=81, Percent_Identity=39.5061728395062, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI161078704, Length=88, Percent_Identity=35.2272727272727, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI281365444, Length=83, Percent_Identity=33.7349397590361, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI281365442, Length=83, Percent_Identity=33.7349397590361, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI281365440, Length=83, Percent_Identity=33.7349397590361, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI281365438, Length=83, Percent_Identity=33.7349397590361, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI281365436, Length=83, Percent_Identity=33.7349397590361, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI281365434, Length=83, Percent_Identity=33.7349397590361, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24655233, Length=83, Percent_Identity=33.7349397590361, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24655242, Length=83, Percent_Identity=33.7349397590361, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24655237, Length=83, Percent_Identity=33.7349397590361, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI17137710, Length=76, Percent_Identity=38.1578947368421, Blast_Score=62, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24655228, Length=83, Percent_Identity=33.7349397590361, Blast_Score=62, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24649519, Length=79, Percent_Identity=39.2405063291139, Blast_Score=62, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24649515, Length=79, Percent_Identity=39.2405063291139, Blast_Score=62, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24649517, Length=79, Percent_Identity=39.2405063291139, Blast_Score=62, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24649513, Length=79, Percent_Identity=39.2405063291139, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 12553; Mature: 12553

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIFVGSLPFSIEEADLRESFEAYGTVDSVKIITDKFTGRSKGFGFVEMPNDSEAQKAID
CCEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHHHH
ELNGAVVSGRTIVVNKSEPKPEGERRSFNNNRGGNDRGGYGNNRGGDRGNRREY
HHCCEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNIFVGSLPFSIEEADLRESFEAYGTVDSVKIITDKFTGRSKGFGFVEMPNDSEAQKAID
CCEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHHHH
ELNGAVVSGRTIVVNKSEPKPEGERRSFNNNRGGNDRGGYGNNRGGDRGNRREY
HHCCEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8704138; 8590279; 8905231 [H]