| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is treA [H]
Identifier: 146299022
GI number: 146299022
Start: 1438052
End: 1439917
Strand: Direct
Name: treA [H]
Synonym: Fjoh_1262
Alternate gene names: 146299022
Gene position: 1438052-1439917 (Clockwise)
Preceding gene: 146299021
Following gene: 146299024
Centisome position: 23.59
GC content: 35.21
Gene sequence:
>1866_bases ATGAAATTTAAACTACATATAACCCAAACCATCGAAAAATTATTGGCTCAGGAAGATACTGACGGCGATAAAAAAATTAC GATAGATGACAACGGTCCAAAAAGTTTTTTACTTTATGATCAAGATGGAAATCCGGCAGTTATTAAAGGAACTTACCAGC TCTCGAATTTATTGCAGGAACTGGCCTTGGCTAAGAAAAACAATGTCGAATCAGCGGAGATAGATTTAAACGAAATCACC GAAGATCCTGTCAAAAGAATTTCAAGAAAAATTAAAGACTTGTATTGGAACGGCCTTACCAGAACAATCGATGCCATTGG CGTAAAGAAAATTCTGGAAGACGATAAAATCGAAAATGAATTTGCTTATTTATATGTGCCTTTTGGCGACGAAATTGTTT TTGATTATTTCAAGAAATTAGAAGCCTCAACACCAAAATTAAAAGTGGTGCAGATGCCTAAAAATATTACTCCTGAATAT GTTTTATCACTGAACAAAAAACCGGGAATTCTGGCTTTGGCACTTCAAATTAAAAACAATGAAGTTTCGGGCGTTCCGTT TGTGGTTCCCGGCGGAAGATTCAACGAAATGTACGGCTGGGACAGTTATTTTATTGCTAAAGGACTTTTAATTGATGATA AAATTGACCTTGCTTTGGGTATTGCCGAGAACTTTAAATATCAAATAGATCATTACGGAAAAATTCTAAACGCTAACAGA AGTTATTATTTAACCAGAACACAGCCTCCGTTGTATACATCGTTGATTATAGATGTTTTAGAAAAGTCAAATCCGGATAT TTTTTGGATTGAAAGACATTTAAAAACGGCTATAAAAGAATATTTAACCGTTTGGATGGAAGAAGGAAAAAGACTTACAG CAAATGGTTTAAATCGTTATAAAGCAGAAGGAATCGGGCTTCCGTTTGAGGTAGAAGAAGGGCATTTTGATGATATTCTG GAACAATATGCGCCAAAATACAACTTGTCTACGCGAGAATTCGAAAAGAAATATCTGGAAAGGGAAGTGGTTGATGAAGA ACTCGATAAATACTTTATTCACGATCGGAGCATGCGCGAAAGCGGTCATGACACAACCAATAGATTAGTTGGAGTTTGTG CCAATTTAAATACAGTTGCGATCAATAGTCTGCTTTATAAATACGAAACCGATATTGCTTTTTTGATTCAGAAATACTTT AAAAATGAATTTCAATATTTTGAAGATAAATCCTTTTCAAGTGAATATTGGCTGTTAAAAGCATCTTCGAGAAAAGAAAA AATAAACAAATTGTTATGGAGTTCTGAAAATGGAATTTATTTCGATTATGATTTTGTGAATGAAAAACAGCATGTTTTTG AAGCAGCCACAACTTTTTATCCGCTTTGGGCAAAAATAAGTACTCCGGAACAAGCTGAAATTTTGGTGAAAAAGACACTT CCAAAGTTTAAAATGAAAGGCGGAATTACGGGAAGTACCAAAGAATCAATTGCCGGCGTTGATGAAAATGCACCAATACG CCAATGGGATTATCCGTTTGGCTGGGCGCCGCATCAAATGCTTTTATGGGAAGGACTTCTGAATTATAATTTTAATGAAG AAGCGCAGGAAATGGTCTATCGCTGGCTTTGGCTCATTACCAGAAACGCGGTTGATTACAACGGAACGATTCCGGAAAAG TTTGATTTATCGATAAGCTCGCATAAAATCTTTGCCGAATACGGAAACGTAGGAACGGAATTTAATTATATAACCGAGGA AGGTTTTGGATGGATGAATGCTTCGTATCAATTCGGTTTAACGATTTTAAAAGACGATTTAAAACAAAAATTATCAGATT TAGTTGATCCTGATGAACTTTTTTAA
Upstream 100 bases:
>100_bases TTTAAAAATGAAGGTCCGGAAAAGGCTTTTTATTTTACCCTCATTCCAATGACTTTGTTACTGATCTCCTTTTTTATTCT TAAAAAAATAACTGCAAAAG
Downstream 100 bases:
>100_bases GGTTCATAAAATGAGAAACCCGACAGGTTTTTAAAAACCTGTCGGGTTTCTGTTTCATAAGCCTTCGACTTCGCTCAGGA TGACACTCATTTTATGACAA
Product: alpha,alpha-trehalase
Products: NA
Alternate protein names: Alpha,alpha-trehalase; Alpha,alpha-trehalose glucohydrolase [H]
Number of amino acids: Translated: 621; Mature: 621
Protein sequence:
>621_residues MKFKLHITQTIEKLLAQEDTDGDKKITIDDNGPKSFLLYDQDGNPAVIKGTYQLSNLLQELALAKKNNVESAEIDLNEIT EDPVKRISRKIKDLYWNGLTRTIDAIGVKKILEDDKIENEFAYLYVPFGDEIVFDYFKKLEASTPKLKVVQMPKNITPEY VLSLNKKPGILALALQIKNNEVSGVPFVVPGGRFNEMYGWDSYFIAKGLLIDDKIDLALGIAENFKYQIDHYGKILNANR SYYLTRTQPPLYTSLIIDVLEKSNPDIFWIERHLKTAIKEYLTVWMEEGKRLTANGLNRYKAEGIGLPFEVEEGHFDDIL EQYAPKYNLSTREFEKKYLEREVVDEELDKYFIHDRSMRESGHDTTNRLVGVCANLNTVAINSLLYKYETDIAFLIQKYF KNEFQYFEDKSFSSEYWLLKASSRKEKINKLLWSSENGIYFDYDFVNEKQHVFEAATTFYPLWAKISTPEQAEILVKKTL PKFKMKGGITGSTKESIAGVDENAPIRQWDYPFGWAPHQMLLWEGLLNYNFNEEAQEMVYRWLWLITRNAVDYNGTIPEK FDLSISSHKIFAEYGNVGTEFNYITEEGFGWMNASYQFGLTILKDDLKQKLSDLVDPDELF
Sequences:
>Translated_621_residues MKFKLHITQTIEKLLAQEDTDGDKKITIDDNGPKSFLLYDQDGNPAVIKGTYQLSNLLQELALAKKNNVESAEIDLNEIT EDPVKRISRKIKDLYWNGLTRTIDAIGVKKILEDDKIENEFAYLYVPFGDEIVFDYFKKLEASTPKLKVVQMPKNITPEY VLSLNKKPGILALALQIKNNEVSGVPFVVPGGRFNEMYGWDSYFIAKGLLIDDKIDLALGIAENFKYQIDHYGKILNANR SYYLTRTQPPLYTSLIIDVLEKSNPDIFWIERHLKTAIKEYLTVWMEEGKRLTANGLNRYKAEGIGLPFEVEEGHFDDIL EQYAPKYNLSTREFEKKYLEREVVDEELDKYFIHDRSMRESGHDTTNRLVGVCANLNTVAINSLLYKYETDIAFLIQKYF KNEFQYFEDKSFSSEYWLLKASSRKEKINKLLWSSENGIYFDYDFVNEKQHVFEAATTFYPLWAKISTPEQAEILVKKTL PKFKMKGGITGSTKESIAGVDENAPIRQWDYPFGWAPHQMLLWEGLLNYNFNEEAQEMVYRWLWLITRNAVDYNGTIPEK FDLSISSHKIFAEYGNVGTEFNYITEEGFGWMNASYQFGLTILKDDLKQKLSDLVDPDELF >Mature_621_residues MKFKLHITQTIEKLLAQEDTDGDKKITIDDNGPKSFLLYDQDGNPAVIKGTYQLSNLLQELALAKKNNVESAEIDLNEIT EDPVKRISRKIKDLYWNGLTRTIDAIGVKKILEDDKIENEFAYLYVPFGDEIVFDYFKKLEASTPKLKVVQMPKNITPEY VLSLNKKPGILALALQIKNNEVSGVPFVVPGGRFNEMYGWDSYFIAKGLLIDDKIDLALGIAENFKYQIDHYGKILNANR SYYLTRTQPPLYTSLIIDVLEKSNPDIFWIERHLKTAIKEYLTVWMEEGKRLTANGLNRYKAEGIGLPFEVEEGHFDDIL EQYAPKYNLSTREFEKKYLEREVVDEELDKYFIHDRSMRESGHDTTNRLVGVCANLNTVAINSLLYKYETDIAFLIQKYF KNEFQYFEDKSFSSEYWLLKASSRKEKINKLLWSSENGIYFDYDFVNEKQHVFEAATTFYPLWAKISTPEQAEILVKKTL PKFKMKGGITGSTKESIAGVDENAPIRQWDYPFGWAPHQMLLWEGLLNYNFNEEAQEMVYRWLWLITRNAVDYNGTIPEK FDLSISSHKIFAEYGNVGTEFNYITEEGFGWMNASYQFGLTILKDDLKQKLSDLVDPDELF
Specific function: Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system [H]
COG id: COG1626
COG function: function code G; Neutral trehalase
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 37 family [H]
Homologues:
Organism=Homo sapiens, GI116284412, Length=428, Percent_Identity=28.7383177570093, Blast_Score=120, Evalue=4e-27, Organism=Escherichia coli, GI1787447, Length=436, Percent_Identity=27.9816513761468, Blast_Score=154, Evalue=1e-38, Organism=Escherichia coli, GI1789936, Length=427, Percent_Identity=28.5714285714286, Blast_Score=149, Evalue=4e-37, Organism=Caenorhabditis elegans, GI17542196, Length=441, Percent_Identity=26.530612244898, Blast_Score=116, Evalue=4e-26, Organism=Caenorhabditis elegans, GI25148109, Length=430, Percent_Identity=25.1162790697674, Blast_Score=108, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17565078, Length=482, Percent_Identity=24.2738589211618, Blast_Score=108, Evalue=1e-23, Organism=Caenorhabditis elegans, GI71987755, Length=443, Percent_Identity=23.4762979683973, Blast_Score=96, Evalue=8e-20, Organism=Caenorhabditis elegans, GI25141398, Length=430, Percent_Identity=25.1162790697674, Blast_Score=96, Evalue=8e-20, Organism=Saccharomyces cerevisiae, GI6319473, Length=634, Percent_Identity=44.4794952681388, Blast_Score=546, Evalue=1e-156, Organism=Saccharomyces cerevisiae, GI6320204, Length=637, Percent_Identity=43.7990580847724, Blast_Score=534, Evalue=1e-152, Organism=Drosophila melanogaster, GI24656680, Length=430, Percent_Identity=27.4418604651163, Blast_Score=125, Evalue=9e-29, Organism=Drosophila melanogaster, GI24656675, Length=430, Percent_Identity=27.4418604651163, Blast_Score=125, Evalue=9e-29, Organism=Drosophila melanogaster, GI24656661, Length=430, Percent_Identity=27.4418604651163, Blast_Score=125, Evalue=1e-28, Organism=Drosophila melanogaster, GI17933716, Length=430, Percent_Identity=27.4418604651163, Blast_Score=125, Evalue=1e-28, Organism=Drosophila melanogaster, GI24656670, Length=430, Percent_Identity=27.4418604651163, Blast_Score=125, Evalue=1e-28, Organism=Drosophila melanogaster, GI24656685, Length=430, Percent_Identity=27.4418604651163, Blast_Score=124, Evalue=1e-28, Organism=Drosophila melanogaster, GI22024178, Length=423, Percent_Identity=23.4042553191489, Blast_Score=84, Evalue=3e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008928 - InterPro: IPR001661 - InterPro: IPR018232 [H]
Pfam domain/function: PF01204 Trehalase [H]
EC number: =3.2.1.28 [H]
Molecular weight: Translated: 72092; Mature: 72092
Theoretical pI: Translated: 4.86; Mature: 4.86
Prosite motif: PS00927 TREHALASE_1 ; PS00928 TREHALASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFKLHITQTIEKLLAQEDTDGDKKITIDDNGPKSFLLYDQDGNPAVIKGTYQLSNLLQE CEEEEEHHHHHHHHHHCCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEEHHHHHHHHHH LALAKKNNVESAEIDLNEITEDPVKRISRKIKDLYWNGLTRTIDAIGVKKILEDDKIENE HHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCC FAYLYVPFGDEIVFDYFKKLEASTPKLKVVQMPKNITPEYVLSLNKKPGILALALQIKNN EEEEEEECCHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHEEEECCCCCEEEEEEEEECC EVSGVPFVVPGGRFNEMYGWDSYFIAKGLLIDDKIDLALGIAENFKYQIDHYGKILNANR CCCCCCEEECCCCCCCCCCCCHHHHHCCCEEECCCCEEEEEHHCCEEEHHHHHHEECCCC SYYLTRTQPPLYTSLIIDVLEKSNPDIFWIERHLKTAIKEYLTVWMEEGKRLTANGLNRY CEEEEECCCCHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHCCCEEECCCCCHH KAEGIGLPFEVEEGHFDDILEQYAPKYNLSTREFEKKYLEREVVDEELDKYFIHDRSMRE HHCCCCCCEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH SGHDTTNRLVGVCANLNTVAINSLLYKYETDIAFLIQKYFKNEFQYFEDKSFSSEYWLLK CCCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE ASSRKEKINKLLWSSENGIYFDYDFVNEKQHVFEAATTFYPLWAKISTPEQAEILVKKTL CCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHEEEEECCCCHHHHHHHHHCC PKFKMKGGITGSTKESIAGVDENAPIRQWDYPFGWAPHQMLLWEGLLNYNFNEEAQEMVY CCHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHH RWLWLITRNAVDYNGTIPEKFDLSISSHKIFAEYGNVGTEFNYITEEGFGWMNASYQFGL HHHHHHHCCCCCCCCCCCCCEECEECCCEEEEECCCCCCCEEEEECCCCCEECCCHHCCH TILKDDLKQKLSDLVDPDELF HHHHHHHHHHHHHCCCHHHCC >Mature Secondary Structure MKFKLHITQTIEKLLAQEDTDGDKKITIDDNGPKSFLLYDQDGNPAVIKGTYQLSNLLQE CEEEEEHHHHHHHHHHCCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEEHHHHHHHHHH LALAKKNNVESAEIDLNEITEDPVKRISRKIKDLYWNGLTRTIDAIGVKKILEDDKIENE HHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCC FAYLYVPFGDEIVFDYFKKLEASTPKLKVVQMPKNITPEYVLSLNKKPGILALALQIKNN EEEEEEECCHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHEEEECCCCCEEEEEEEEECC EVSGVPFVVPGGRFNEMYGWDSYFIAKGLLIDDKIDLALGIAENFKYQIDHYGKILNANR CCCCCCEEECCCCCCCCCCCCHHHHHCCCEEECCCCEEEEEHHCCEEEHHHHHHEECCCC SYYLTRTQPPLYTSLIIDVLEKSNPDIFWIERHLKTAIKEYLTVWMEEGKRLTANGLNRY CEEEEECCCCHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHCCCEEECCCCCHH KAEGIGLPFEVEEGHFDDILEQYAPKYNLSTREFEKKYLEREVVDEELDKYFIHDRSMRE HHCCCCCCEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH SGHDTTNRLVGVCANLNTVAINSLLYKYETDIAFLIQKYFKNEFQYFEDKSFSSEYWLLK CCCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE ASSRKEKINKLLWSSENGIYFDYDFVNEKQHVFEAATTFYPLWAKISTPEQAEILVKKTL CCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHEEEEECCCCHHHHHHHHHCC PKFKMKGGITGSTKESIAGVDENAPIRQWDYPFGWAPHQMLLWEGLLNYNFNEEAQEMVY CCHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHH RWLWLITRNAVDYNGTIPEKFDLSISSHKIFAEYGNVGTEFNYITEEGFGWMNASYQFGL HHHHHHHCCCCCCCCCCCCCEECEECCCEEEEECCCCCCCEEEEECCCCCEECCCHHCCH TILKDDLKQKLSDLVDPDELF HHHHHHHHHHHHHCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA