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The map label for this gene is ideR [H]

Identifier: 146298695

GI number: 146298695

Start: 1047354

End: 1048007

Strand: Direct

Name: ideR [H]

Synonym: Fjoh_0933

Alternate gene names: 146298695

Gene position: 1047354-1048007 (Clockwise)

Preceding gene: 146298694

Following gene: 146298704

Centisome position: 17.18

GC content: 35.02

Gene sequence:

>654_bases
ATGACCTTTTCAGAAGAAAACTACTTAAAATCGATATATCATCTTACGGCTTCGTTAGAAACTGAAGTAAGCACTAATGC
TATTGCTGAAATGATGGAAACGAAAGCTTCCTCTGTAACAGATATGCTGAAAAAACTCGCAGAAAAGGATTTGGTTAATT
ATAAAAAGTACCAAGGCGTTTCATTGACAGAAAACGGAAAACTTGCTGCTAAAATGATCGTAAGAAAACACCGTTTATGG
GAAGTTTTTCTGGTTGAAAAACTCAATTTCAGCTGGGATGAAGTTCATGATATTGCAGAACAGCTGGAACACATTAAATC
AGAACAGCTGATTAACCGTCTGGATGATTTTCTGGGAAATCCAACTGAAGATCCGCATGGCGATCCAATTCCGGATGCAA
ACGGCCGAATCATTAAAATAGAAAAACAGCTTTTATCTGAATTAGAAGTAAACCAAACCGGAGTTTGTGTAGGCGTAAAA
GATACTTCATCAGAATTTTTGAAATACCTCGATAAACAAGAAATCGCTTTGGGGTCTAAAATCGAGTTTTTATCTAAAGA
ATCATTCGATTTATCAGTCAAAATTAAAGTTGACGGAAGAGAATTATCTATTTCGAATAAAATTGCTTCTAATTTGTTTG
TAAAGCTGGTTTAG

Upstream 100 bases:

>100_bases
TAAATAAACAAGGCTCAAAGGTTCAGAGTTACAAAGGAACAAAGGTTTTCGACTTTGAACCTTTGAACCTTTGCAACTTT
GCCCCTCAAAAAGAAAAAAA

Downstream 100 bases:

>100_bases
AGGGATGTTTTCAAGAAATAAACTAAGAGGTTCTTAGAGTATTCATACATCAATATTTTTTATTAGTTTGTGAAACCCAT
TTTCCTGCTGTATCAACATT

Product: iron dependent repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MTFSEENYLKSIYHLTASLETEVSTNAIAEMMETKASSVTDMLKKLAEKDLVNYKKYQGVSLTENGKLAAKMIVRKHRLW
EVFLVEKLNFSWDEVHDIAEQLEHIKSEQLINRLDDFLGNPTEDPHGDPIPDANGRIIKIEKQLLSELEVNQTGVCVGVK
DTSSEFLKYLDKQEIALGSKIEFLSKESFDLSVKIKVDGRELSISNKIASNLFVKLV

Sequences:

>Translated_217_residues
MTFSEENYLKSIYHLTASLETEVSTNAIAEMMETKASSVTDMLKKLAEKDLVNYKKYQGVSLTENGKLAAKMIVRKHRLW
EVFLVEKLNFSWDEVHDIAEQLEHIKSEQLINRLDDFLGNPTEDPHGDPIPDANGRIIKIEKQLLSELEVNQTGVCVGVK
DTSSEFLKYLDKQEIALGSKIEFLSKESFDLSVKIKVDGRELSISNKIASNLFVKLV
>Mature_216_residues
TFSEENYLKSIYHLTASLETEVSTNAIAEMMETKASSVTDMLKKLAEKDLVNYKKYQGVSLTENGKLAAKMIVRKHRLWE
VFLVEKLNFSWDEVHDIAEQLEHIKSEQLINRLDDFLGNPTEDPHGDPIPDANGRIIKIEKQLLSELEVNQTGVCVGVKD
TSSEFLKYLDKQEIALGSKIEFLSKESFDLSVKIKVDGRELSISNKIASNLFVKLV

Specific function: Metal-dependent DNA-binding protein that controls transcription of many genes involved in iron metabolism [H]

COG id: COG1321

COG function: function code K; Mn-dependent transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH dtxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007167
- InterPro:   IPR001367
- InterPro:   IPR022689
- InterPro:   IPR022687
- InterPro:   IPR008988
- InterPro:   IPR011991 [H]

Pfam domain/function: PF02742 Fe_dep_repr_C; PF01325 Fe_dep_repress; PF04023 FeoA [H]

EC number: NA

Molecular weight: Translated: 24622; Mature: 24491

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: PS50944 HTH_DTXR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFSEENYLKSIYHLTASLETEVSTNAIAEMMETKASSVTDMLKKLAEKDLVNYKKYQGV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SLTENGKLAAKMIVRKHRLWEVFLVEKLNFSWDEVHDIAEQLEHIKSEQLINRLDDFLGN
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PTEDPHGDPIPDANGRIIKIEKQLLSELEVNQTGVCVGVKDTSSEFLKYLDKQEIALGSK
CCCCCCCCCCCCCCCCEEEEHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCH
IEFLSKESFDLSVKIKVDGRELSISNKIASNLFVKLV
HHHHCCCCCCEEEEEEECCCEEEHHHHHHHHHHEECC
>Mature Secondary Structure 
TFSEENYLKSIYHLTASLETEVSTNAIAEMMETKASSVTDMLKKLAEKDLVNYKKYQGV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SLTENGKLAAKMIVRKHRLWEVFLVEKLNFSWDEVHDIAEQLEHIKSEQLINRLDDFLGN
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PTEDPHGDPIPDANGRIIKIEKQLLSELEVNQTGVCVGVKDTSSEFLKYLDKQEIALGSK
CCCCCCCCCCCCCCCCEEEEHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCH
IEFLSKESFDLSVKIKVDGRELSISNKIASNLFVKLV
HHHHCCCCCCEEEEEEECCCEEEHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]