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The map label for this gene is yobV [H]

Identifier: 146298550

GI number: 146298550

Start: 879237

End: 880196

Strand: Direct

Name: yobV [H]

Synonym: Fjoh_0788

Alternate gene names: 146298550

Gene position: 879237-880196 (Clockwise)

Preceding gene: 146298549

Following gene: 146298553

Centisome position: 14.42

GC content: 34.79

Gene sequence:

>960_bases
ATGCTAGACGAAACCCCAAAACGATTTGATAGAATTGTTGCCATTCTGATTCAATTACAATCAAAAAAAATTGTAAAAGC
ACAGGAATTGGCAGATCGTTTTGAATGCAGTTTAAGAACGATTTACAGGGATATTCGAACTCTCGAAGCTTCTGGAGTTC
CTATTTACAGTGAAGCTGGAGTTGGTTATGCTTTAATGGACGGGTATAGACTGCCTCCTGTAATGTTTACCCGCGAAGAA
GTAAGCAGTTTTATTGCTGCCGAAAAACTAATGCAAAAGTTTACTGATCCTTCTTTGGGAACACACTACGCATCTGCGAT
GTACAAACTGAAAGCTGTTTTAAGAAGTAATGACAAAGATTATCTTTCGAACATCGAATCCAGAATTGTAATGCAGGATG
CAGAACCAATGTTTAATGATAATTCGCCAAATACATTGGCAGTTCTTTTTGAAGGAATCGCAGAGAAAAAGCAAATTCTT
TTAACTTATAAAACTTTTGACAAAGAGGAAACTACGCAACGAAATTTAGAACCTGTTGGCGTTTTTCATGATAATAACAA
TTGGTATTTTTTGGGATACTGCCATCTTAGAAAAGATTATCGACAGTTTAGAACCGACAGAATTCAGGAAATTAAAAAAA
CAGATTTTGATTTTACGATCGAACACGATGCACTGGAAACCTACTTAACTAAAACTGAAACCTGCCCAACAACAAAAGTT
CGTCTTTTAATTGATCGCAAAATCGCAAGATATTTGGCAACAGAGAGAAAATATCATGGTTTTATTTCACAAAAAGAAGC
TGGCGAAAAAATAGAAATGACTTTTATGTCAAGGGATATTGATAATGCATTCCCAAGATGGTTTCTTATGTTTGGAGATT
ATGCCGAGATTATGGAACCTGAAATATTAAAAACCAATGTTCTGAAATTATTAGAAATTAACAGACAAAGGCTTGTATAG

Upstream 100 bases:

>100_bases
ACAGCTTTTTTTATTTTCTTTACTTTTTTCATTTGTATCTTTGAATCTTTAAAGCTGTAAAAAATGCTTAGCTGCTCAGA
ACCTTAGAATCTTAAAAGAA

Downstream 100 bases:

>100_bases
AAAAAACTCCTGATAGAATTATCTTCAGGAGTTTTTTTTTATCTATTTCTGTTTAACAACATTATAAAAATTGTAATCTG
TATTTGAGGCATCTGTAATG

Product: helix-turn-helix, type 11 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MLDETPKRFDRIVAILIQLQSKKIVKAQELADRFECSLRTIYRDIRTLEASGVPIYSEAGVGYALMDGYRLPPVMFTREE
VSSFIAAEKLMQKFTDPSLGTHYASAMYKLKAVLRSNDKDYLSNIESRIVMQDAEPMFNDNSPNTLAVLFEGIAEKKQIL
LTYKTFDKEETTQRNLEPVGVFHDNNNWYFLGYCHLRKDYRQFRTDRIQEIKKTDFDFTIEHDALETYLTKTETCPTTKV
RLLIDRKIARYLATERKYHGFISQKEAGEKIEMTFMSRDIDNAFPRWFLMFGDYAEIMEPEILKTNVLKLLEINRQRLV

Sequences:

>Translated_319_residues
MLDETPKRFDRIVAILIQLQSKKIVKAQELADRFECSLRTIYRDIRTLEASGVPIYSEAGVGYALMDGYRLPPVMFTREE
VSSFIAAEKLMQKFTDPSLGTHYASAMYKLKAVLRSNDKDYLSNIESRIVMQDAEPMFNDNSPNTLAVLFEGIAEKKQIL
LTYKTFDKEETTQRNLEPVGVFHDNNNWYFLGYCHLRKDYRQFRTDRIQEIKKTDFDFTIEHDALETYLTKTETCPTTKV
RLLIDRKIARYLATERKYHGFISQKEAGEKIEMTFMSRDIDNAFPRWFLMFGDYAEIMEPEILKTNVLKLLEINRQRLV
>Mature_319_residues
MLDETPKRFDRIVAILIQLQSKKIVKAQELADRFECSLRTIYRDIRTLEASGVPIYSEAGVGYALMDGYRLPPVMFTREE
VSSFIAAEKLMQKFTDPSLGTHYASAMYKLKAVLRSNDKDYLSNIESRIVMQDAEPMFNDNSPNTLAVLFEGIAEKKQIL
LTYKTFDKEETTQRNLEPVGVFHDNNNWYFLGYCHLRKDYRQFRTDRIQEIKKTDFDFTIEHDALETYLTKTETCPTTKV
RLLIDRKIARYLATERKYHGFISQKEAGEKIEMTFMSRDIDNAFPRWFLMFGDYAEIMEPEILKTNVLKLLEINRQRLV

Specific function: Unknown

COG id: COG2378

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013196
- InterPro:   IPR001034
- InterPro:   IPR011991 [H]

Pfam domain/function: PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 37437; Mature: 37437

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDETPKRFDRIVAILIQLQSKKIVKAQELADRFECSLRTIYRDIRTLEASGVPIYSEAG
CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCC
VGYALMDGYRLPPVMFTREEVSSFIAAEKLMQKFTDPSLGTHYASAMYKLKAVLRSNDKD
CCEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHH
YLSNIESRIVMQDAEPMFNDNSPNTLAVLFEGIAEKKQILLTYKTFDKEETTQRNLEPVG
HHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCHHHHHCCCCEEE
VFHDNNNWYFLGYCHLRKDYRQFRTDRIQEIKKTDFDFTIEHDALETYLTKTETCPTTKV
EEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCCCCHHH
RLLIDRKIARYLATERKYHGFISQKEAGEKIEMTFMSRDIDNAFPRWFLMFGDYAEIMEP
HHHHHHHHHHHHHHHHHHHCCCCHHCCCCEEEEEEHHCCHHHHCHHHHHHCCCHHHHHCC
EILKTNVLKLLEINRQRLV
HHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLDETPKRFDRIVAILIQLQSKKIVKAQELADRFECSLRTIYRDIRTLEASGVPIYSEAG
CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCC
VGYALMDGYRLPPVMFTREEVSSFIAAEKLMQKFTDPSLGTHYASAMYKLKAVLRSNDKD
CCEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHH
YLSNIESRIVMQDAEPMFNDNSPNTLAVLFEGIAEKKQILLTYKTFDKEETTQRNLEPVG
HHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCHHHHHCCCCEEE
VFHDNNNWYFLGYCHLRKDYRQFRTDRIQEIKKTDFDFTIEHDALETYLTKTETCPTTKV
EEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCCCCHHH
RLLIDRKIARYLATERKYHGFISQKEAGEKIEMTFMSRDIDNAFPRWFLMFGDYAEIMEP
HHHHHHHHHHHHHHHHHHHCCCCHHCCCCEEEEEEHHCCHHHHCHHHHHHCCCHHHHHCC
EILKTNVLKLLEINRQRLV
HHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]