| Definition | Pseudomonas stutzeri A1501, complete genome. |
|---|---|
| Accession | NC_009434 |
| Length | 4,567,418 |
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The map label for this gene is 146284436
Identifier: 146284436
GI number: 146284436
Start: 4478201
End: 4480225
Strand: Direct
Name: 146284436
Synonym: PST_4125
Alternate gene names: NA
Gene position: 4478201-4480225 (Clockwise)
Preceding gene: 146284435
Following gene: 146284437
Centisome position: 98.05
GC content: 65.53
Gene sequence:
>2025_bases ATGAGCGAAAGCCAAGGGCTGCACGCCAGTCCCAGCGAATGGCCGAGGGCGCTGTTCTACGTCGCCCTGCTGTTCTCCAT CTATCAGATCGTCACCGCCGCCTTTCACCCGGTGTCCAGCCAGGTGCTGCGCGCCGGTCACGTCGGCTTCCTGTTGCTGC TGGTGTTCCTTTGCTACCCGGCCCGCGGCAACGGCAAGCCGTTCCAGCCCGTGGCCTGGCTGCTTGGGCTGGCCGGTTTC GCCACCTTCATCTACCAGTGGTATTTCGAGGCGGACCTGATCCAGCGCTCCGGCGACATGACCAGCACCGACATGGTGGT CGGCCTGACGCTGATTGTGCTGGTGTTCGAGGCCGCGCGCCGGGTCATGGGTATCGCCCTGCCGATCATCTGCGGGCTGT TCCTCGCCTACGGCCTGCTCGGCGAATACCTGCCCGGTGATCTCGCGCACCGCGGCTATTACCTGGACCAGATCGTCAAC CAGCTGTCGTTCGGCACCGAAGGCCTGTACGGCACGCCGACCTACGTTTCGGCGACCTACATCTTCCTCTTCATCCTGTT CGGCTCGTTCCTCGAGCAGGCGGGAATGATCAAACTATTCACCGACTTCGCCATGGGTCTGTTCGGCCACAAGCTCGGGG GCCCGGCTAAGGTCTCGGTGGTGTCCTCGGCGTTGATGGGCACCATCACCGGTTCCGGTGTGGCCAACGTGGTCACCACC GGCCAGTTCACCATCCCGCTGATGAAGCGCTTCGGTTATCGCCCGGCCTTCGCCGGTGGCGTCGAGGCCACCTCGTCGAT GGGCAGCCAGATCATGCCGCCGGTGATGGGCGCGGTAGCGTTCATCATGGCCGAAACCATCAACGTGCCCTTCGTCGAGA TCGCCAAGGCCGCGCTGATCCCCGCGCTGCTGTACTTCGGCTCGGTGTTCTGGATGGTCCATCTGGAAGCCAAGCGCGCC GGCCTCAAGGGCCTGCCGAAGGACGAGTGCCCGAGTGCCTGGGCCGCAGTGAAGGAGCGCTGGTACCTGCTGATCCCGCT GCTGGTGCTGGTCTGGCTGCTGTTCTCCGGACGCACGCCGATGTTCGCCGGCACCATCGGCCTGGCGCTGACGGCGATCG TCATCCTCGGCTCGGCGATCATCCTCAAGGTGTCGTCGTTCGGCCTGCGCATCGCCTTCTGGATCGCCCTCGGCCTGCTC TGCGCCGGGTTCTTCCAGCTCGGCATCGGGGTGATCTTCGGCGTCATCGCCGCGCTGGTGGCCGTGTGCTGGTTCATCAA GGGCGGCCGCGACACCCTGACCATCTGCCTGCACGCGCTGGTCGAAGGCGCGCGCCATGCGGTGCCGGTGGGTATCGCCT GTGCCCTGGTGGGCGTGATCATCGGCATCGTTTCGCTGACTGGCGTGGCCTCGACCTTCGCCGGCTACATCCTCGCGGTC GGCGAGAACAACCTGTTCCTTTCGCTGATCCTGACCATGCTGACCTGCCTGGTGCTGGGCATGGGCATCCCGACCATTCC CAACTACATCATCACCAGCTCGATCGCCGCACCCGCGCTGCTGGATCTCGGCGTGCCGCTGATCGTCTCGCACATGTTCG TCTTCTACTTCGGCATCATGGCCGACCTGACTCCGCCGGTGGCGCTGGCCTGCTTCGCTGCCGCGCCGATCGCCAAGGAG AAGGGCCTGAAGATCAGCATGTGGGCCATCCGCATCGCCATCGCCGGTTTCATCGTGCCGTTCATGGCGGTGTACAACCC GGCGCTGATGATGCAGGGCGGAGACTGGGGCGCCACGCTGTACATGCTGTTCAAGGCGGCGTTCGCCATCGGCCTGTGGG GCGCGGTGTTCACCGGCTACCTGCAGCGGCCCATGGCGCTGTGGGAGAAAGTGCTGGGCTTCGTCGCCGGTGCGGCGATG ATCCTCGCCACGCCGATGAGTGACGAGATCGGCTTCGCCCTCGGCGCGATCTTCCTCGCTCAGCACATCTGGCGCGCCCG TCGCGCCGAGCCGGCGGCGGCGTGA
Upstream 100 bases:
>100_bases CCTGCTCCAGCCCGCATCCTTGTAGCAGCAGGCTTGCCCGCGTTGCCTCGTTGGCAAGCCTGCTTCTACAGGCCCCACCT TGCAGTGAGAGAGTGATTCC
Downstream 100 bases:
>100_bases TCGGTCTGTGCCTGGGGCTGGCAGGCGTGGTGTGGGCCGAAGTGCCCACCCCCGCCTTCACCCTGGCGTGGAACCACACC ATCGAGAAGATCCGCTGGGA
Product: transporter, putative
Products: NA
Alternate protein names: Trap Transporter 4tm/12tm Fusion Protein; TRAP Transporter; TRAP-Type Transport System Fused Permease Component; TRAP-Type Transport System Permease Component; TRAP-Type Transporter 4TM/12TM Fusion Protein; C4-Dicarboxylate Anaerobic Carrier; TRAP-T Family Transporter With Fused DctQ/DctM Subunits; TRAP-Type Transporter Permease Component; Permease; TRAP-Type Transport System Permease; TRAP-Type Transport System Permease Protein; TRAP-Type Transporter Fused Permease Components; TRAP Transporter Large Permease; TRAP Transport System Permease Component; TRAP-Type Transporter Fused Permeases; C4-Dicarboxylate Transporter; TRAP Type Transporter Protein; Inner Membrane Protein; TRAP-T Family Transporter Fused Inner Membrane Subunits; TRAP Transporter Transmembrane Protein; TRAP Transporter Permease; Integral Membrane Protein; Trap Family Transporter; N-Carbamoyl-L-Amino Acid Hydrolase; TRAP Family Transporter; TRAP-Type Transport System Fused Permease Components; 4TM/12TM TRAP Transporter; TRAP Transporter Membrane-Spanning Component; TRAP-Type Transport System
Number of amino acids: Translated: 674; Mature: 673
Protein sequence:
>674_residues MSESQGLHASPSEWPRALFYVALLFSIYQIVTAAFHPVSSQVLRAGHVGFLLLLVFLCYPARGNGKPFQPVAWLLGLAGF ATFIYQWYFEADLIQRSGDMTSTDMVVGLTLIVLVFEAARRVMGIALPIICGLFLAYGLLGEYLPGDLAHRGYYLDQIVN QLSFGTEGLYGTPTYVSATYIFLFILFGSFLEQAGMIKLFTDFAMGLFGHKLGGPAKVSVVSSALMGTITGSGVANVVTT GQFTIPLMKRFGYRPAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALIPALLYFGSVFWMVHLEAKRA GLKGLPKDECPSAWAAVKERWYLLIPLLVLVWLLFSGRTPMFAGTIGLALTAIVILGSAIILKVSSFGLRIAFWIALGLL CAGFFQLGIGVIFGVIAALVAVCWFIKGGRDTLTICLHALVEGARHAVPVGIACALVGVIIGIVSLTGVASTFAGYILAV GENNLFLSLILTMLTCLVLGMGIPTIPNYIITSSIAAPALLDLGVPLIVSHMFVFYFGIMADLTPPVALACFAAAPIAKE KGLKISMWAIRIAIAGFIVPFMAVYNPALMMQGGDWGATLYMLFKAAFAIGLWGAVFTGYLQRPMALWEKVLGFVAGAAM ILATPMSDEIGFALGAIFLAQHIWRARRAEPAAA
Sequences:
>Translated_674_residues MSESQGLHASPSEWPRALFYVALLFSIYQIVTAAFHPVSSQVLRAGHVGFLLLLVFLCYPARGNGKPFQPVAWLLGLAGF ATFIYQWYFEADLIQRSGDMTSTDMVVGLTLIVLVFEAARRVMGIALPIICGLFLAYGLLGEYLPGDLAHRGYYLDQIVN QLSFGTEGLYGTPTYVSATYIFLFILFGSFLEQAGMIKLFTDFAMGLFGHKLGGPAKVSVVSSALMGTITGSGVANVVTT GQFTIPLMKRFGYRPAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALIPALLYFGSVFWMVHLEAKRA GLKGLPKDECPSAWAAVKERWYLLIPLLVLVWLLFSGRTPMFAGTIGLALTAIVILGSAIILKVSSFGLRIAFWIALGLL CAGFFQLGIGVIFGVIAALVAVCWFIKGGRDTLTICLHALVEGARHAVPVGIACALVGVIIGIVSLTGVASTFAGYILAV GENNLFLSLILTMLTCLVLGMGIPTIPNYIITSSIAAPALLDLGVPLIVSHMFVFYFGIMADLTPPVALACFAAAPIAKE KGLKISMWAIRIAIAGFIVPFMAVYNPALMMQGGDWGATLYMLFKAAFAIGLWGAVFTGYLQRPMALWEKVLGFVAGAAM ILATPMSDEIGFALGAIFLAQHIWRARRAEPAAA >Mature_673_residues SESQGLHASPSEWPRALFYVALLFSIYQIVTAAFHPVSSQVLRAGHVGFLLLLVFLCYPARGNGKPFQPVAWLLGLAGFA TFIYQWYFEADLIQRSGDMTSTDMVVGLTLIVLVFEAARRVMGIALPIICGLFLAYGLLGEYLPGDLAHRGYYLDQIVNQ LSFGTEGLYGTPTYVSATYIFLFILFGSFLEQAGMIKLFTDFAMGLFGHKLGGPAKVSVVSSALMGTITGSGVANVVTTG QFTIPLMKRFGYRPAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALIPALLYFGSVFWMVHLEAKRAG LKGLPKDECPSAWAAVKERWYLLIPLLVLVWLLFSGRTPMFAGTIGLALTAIVILGSAIILKVSSFGLRIAFWIALGLLC AGFFQLGIGVIFGVIAALVAVCWFIKGGRDTLTICLHALVEGARHAVPVGIACALVGVIIGIVSLTGVASTFAGYILAVG ENNLFLSLILTMLTCLVLGMGIPTIPNYIITSSIAAPALLDLGVPLIVSHMFVFYFGIMADLTPPVALACFAAAPIAKEK GLKISMWAIRIAIAGFIVPFMAVYNPALMMQGGDWGATLYMLFKAAFAIGLWGAVFTGYLQRPMALWEKVLGFVAGAAMI LATPMSDEIGFALGAIFLAQHIWRARRAEPAAA
Specific function: Unknown
COG id: COG4666
COG function: function code R; TRAP-type uncharacterized transport system, fused permease components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 72067; Mature: 71936
Theoretical pI: Translated: 8.58; Mature: 8.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSESQGLHASPSEWPRALFYVALLFSIYQIVTAAFHPVSSQVLRAGHVGFLLLLVFLCYP CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCHHHHHHHHHHHHCC ARGNGKPFQPVAWLLGLAGFATFIYQWYFEADLIQRSGDMTSTDMVVGLTLIVLVFEAAR CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH RVMGIALPIICGLFLAYGLLGEYLPGDLAHRGYYLDQIVNQLSFGTEGLYGTPTYVSATY HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHH IFLFILFGSFLEQAGMIKLFTDFAMGLFGHKLGGPAKVSVVSSALMGTITGSGVANVVTT HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHCC GQFTIPLMKRFGYRPAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALI CCHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH PALLYFGSVFWMVHLEAKRAGLKGLPKDECPSAWAAVKERWYLLIPLLVLVWLLFSGRTP HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC MFAGTIGLALTAIVILGSAIILKVSSFGLRIAFWIALGLLCAGFFQLGIGVIFGVIAALV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVCWFIKGGRDTLTICLHALVEGARHAVPVGIACALVGVIIGIVSLTGVASTFAGYILAV HHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEE GENNLFLSLILTMLTCLVLGMGIPTIPNYIITSSIAAPALLDLGVPLIVSHMFVFYFGIM CCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH ADLTPPVALACFAAAPIAKEKGLKISMWAIRIAIAGFIVPFMAVYNPALMMQGGDWGATL HHCCHHHHHHHHHHCCCHHHCCCEEHHHHHHHHHHHHHHHHHHHHCCHHEEECCCHHHHH YMLFKAAFAIGLWGAVFTGYLQRPMALWEKVLGFVAGAAMILATPMSDEIGFALGAIFLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH QHIWRARRAEPAAA HHHHHHHCCCCCCC >Mature Secondary Structure SESQGLHASPSEWPRALFYVALLFSIYQIVTAAFHPVSSQVLRAGHVGFLLLLVFLCYP CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCHHHHHHHHHHHHCC ARGNGKPFQPVAWLLGLAGFATFIYQWYFEADLIQRSGDMTSTDMVVGLTLIVLVFEAAR CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH RVMGIALPIICGLFLAYGLLGEYLPGDLAHRGYYLDQIVNQLSFGTEGLYGTPTYVSATY HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHH IFLFILFGSFLEQAGMIKLFTDFAMGLFGHKLGGPAKVSVVSSALMGTITGSGVANVVTT HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHCC GQFTIPLMKRFGYRPAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALI CCHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH PALLYFGSVFWMVHLEAKRAGLKGLPKDECPSAWAAVKERWYLLIPLLVLVWLLFSGRTP HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC MFAGTIGLALTAIVILGSAIILKVSSFGLRIAFWIALGLLCAGFFQLGIGVIFGVIAALV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVCWFIKGGRDTLTICLHALVEGARHAVPVGIACALVGVIIGIVSLTGVASTFAGYILAV HHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEE GENNLFLSLILTMLTCLVLGMGIPTIPNYIITSSIAAPALLDLGVPLIVSHMFVFYFGIM CCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH ADLTPPVALACFAAAPIAKEKGLKISMWAIRIAIAGFIVPFMAVYNPALMMQGGDWGATL HHCCHHHHHHHHHHCCCHHHCCCEEHHHHHHHHHHHHHHHHHHHHCCHHEEECCCHHHHH YMLFKAAFAIGLWGAVFTGYLQRPMALWEKVLGFVAGAAMILATPMSDEIGFALGAIFLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH QHIWRARRAEPAAA HHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA