| Definition | Pseudomonas stutzeri A1501, complete genome. |
|---|---|
| Accession | NC_009434 |
| Length | 4,567,418 |
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The map label for this gene is 146284361
Identifier: 146284361
GI number: 146284361
Start: 4401045
End: 4403597
Strand: Direct
Name: 146284361
Synonym: PST_4049
Alternate gene names: NA
Gene position: 4401045-4403597 (Clockwise)
Preceding gene: 146284360
Following gene: 146284363
Centisome position: 96.36
GC content: 66.35
Gene sequence:
>2553_bases ATGCAAGACAAACAACTGTCCACCGAGGAACTGATCGCCCAGGACGTCGGTGCACGTTCGCCCGCCGGGCCGATGGCCGC GGTCATCGCCGGGCTCGCACTGCTCTGGTCGCTGTTCCAGCTGTGGATCGCCTCGCCGCTGCCGTTCATCCTCGGCTTCG GCGTGCTGAACGACACCGAAACCCGCTCGATTCACCTGGCCTTCGCCCTGCTGCTGGCTTTTCTCGCCTACCCGGCCTTC AAGCGCTCGCCGCGTGACCGCGTGCCGCTAATGGACATCGCCCTCGGGCTGGTGGCCGCCGCCTGCGCCGCCTATCTGTT TCTCGCCTATTCGCAACTGGCGCAGCGCCCCGGCAACCTGACCACCCTGGACCTGGTCACGGCCTGCGTCGGCATACCGC TGCTGCTGGAAGCCACCCGCCGCGCCCTCGGCCCGCCGCTGGCGATCATCGCCCTGGTGTTCCTCGTCTACAGCGTCGCC GGCCCCTGGATGCCCGGCCTGCTGGCCCACCGCGGGGTGAGCTTCACCGCACTGGCCAACCACCAGTGGATCACCACCGA AGGCGTGTTCGGCATCGCCCTCGGCGTCTCCACCAGCTTCGTCTTCCTCTTCGTGCTGTTCGGTGCCTTGCTTGAGCGAG CCGGCGCCGGGCATTACTTCATTCAGCTGGCCTTCAGCATGCTCGGCCATTTCCGCGGTGGTCCGGCCAAGGCGGCCGTG GTGGCCTCCGGCATGACCGGCCTGATCTCCGGCTCGTCCATCGCCAACGTGGTGACCACCGGCACCTTCACCATCCCGAT GATGAAACGCACCGGCTTCTCGGCGGAGAAGGCCGGCGCGGTGGAAGTGGCCTCCTCGGTCAACGGCCAGATCATGCCGC CGGTGATGGGTGCGGCGGCCTTCCTGATGGTCGAGTACGTCGGCATTCCCTATGTGGAAGTGATCAAGCATGCCTTTCTC CCGGCGCTGATCTCCTATATCGCGCTGATCTACATCGTCCACCTGGAATCGCTCAAGCTCGGTCTGCAGGCGCTGCCGCG GGCCAACGTGGCCAAACCCTGGATGCAGCGGCTGATCGGCTTCGCCTTCGGCGCCGCGCTGATCTCCGGCCTTTCGCTGG GCGTCTACTACGGCCTCGGCTGGCTCAAGCCGGCCCTCGGCGATGCCGCGCTGTGGGTCATCGCCGGGCTGCTGGCGCTG GTCTACCTCGGTCTGCTGAAGATCGCCGCGAGCAACCCGCCGCTGCCCCATGAAGATCCCAACATGCCGCTGGAGAAGCT GCCGGAAACCCGTCCGGTGCTGCTCTCCGGCTTGCACTTCCTGCTGCCGGTAGTGGTGCTGGTCTGGTGCCTGATGATCG AGCGGCTGTCCCCCGGCCTCTCGGCCTTCTGGGGTTCGGTGATGCTGGTGATCATCCTGCTCACCCAGCGCCCGCTGCTG TCATGGATGCGCCATGACCGCAGCCACGTGGACGGCACCTTCATGGACGGCGTGATCGACCTGCGCGAGGGCCTGATCGC CGGTGCGCGCAACATGATCGGCATCGGCATCGCCACCGCGGCGGCGGGCATCATCGTCGGTGCGGTGTCGCAGACCGGCG TGGGCCTGGTGCTGGCGGATCTGGTGGAACTGCTGTCGATGGGCAATCTGCTGCTGATGCTGTTGCTCACCGCCTTCCTC AGCCTGATTCTCGGCATGGGCCTGCCCACCACCGCCAACTACATCGTGGTGTCCAGCCTGCTGGCGCCGGTGATCGTCGC CCTGGGCCAGCAGAACGGGCTGATCGTGCCGCTGATCGCGGTGCATCTGTTCGTCTTCTACTTCGGCATCATGGCCGACG TGACGCCGCCGGTGGGCCTGGCCTCGTTCGCCGCGGCGGCGGTGTCCAAGGGCGATCCGATCCGCACCGGGGTGACTGCG TTCTATTACAGCCTGCGCACCGCGGCGCTGCCGTTCCTGTTCATCTTTAACACCGACCTGCTGCTGATCGGCGTGGACTT CTGGCACGGCGTGCTGATCTTCATCGTCGCCACCATCGCCATGCTGATCTTCGCCGCCGGCACCCAGGGCTATTTCCTGG TGCGCAGCCGCTGGTACGAGAGCCTGCTGTTGCTGCTGGTGGCCTTCACCCTGTTCCGCCCCGGCTTCTGGATGGATCTC ATCCATGACCCGTATCAGGAGATTCCGCCGGCGCAGCTGGTGGAAGCACTGGGCAACGTCGAGGAAGACAGCCAGCTGCG CCTGCGCGTGCTCGGCGAGGACGCAGTAGGCGATGCCCGTGAGTTCGTGCTGTTGCTGGCGATCCCGGACGGCGCCTCGG GCGAGGAGAAGCTGGAGAAGATCGGCCTGATGACCTACGAGCAGGACGGCAAGCTGCTGGTGGACAGCGTCACCTTCGGC AGCCCGGCTGCCGAGGCGGGGCTGGAGTTCGACCAGCAGATTCTCTCGGTACGCGCGCCGACCGACCGCTGGCCGAAGGA ATTCATGTGGATTCCGGGCTTCCTGCTGTTCGGCCTGATCGTCTGGATGCAGCGCCGCCGCCGTCAGACCTGA
Upstream 100 bases:
>100_bases CGTCCGCCGGCCTGATTGCCACGCCTCAGCTGAGAACCCGTGCGCCGTATGGCCACGGGTTTTCGCGGTTCCGTTACCTG AAAAAAACAGGCCTCATTTC
Downstream 100 bases:
>100_bases TCGACTCGGAAGCGTCTGAAACCCCGGTCACGTGCGAGCGTGCCGGGGTTTTTCATTTGGTGCTCCCACCGGCGTACCCG CGCCAGGGCACCATGATCAA
Product: putative TRAP-type uncharacterized transport system, fused permease component
Products: NA
Alternate protein names: Trap Transporter 4tm/12tm Fusion Protein; TRAP Transporter; TRAP-Type Transport System Fused Permease Component; TRAP-Type Transport System Permease Protein; TRAP-Type Transport System Permease Component; TRAP-Type Transporter 4TM/12TM Fusion Protein; TRAP-Type Transporter Fused Permease Components; TRAP-T Family Transporter With Fused DctQ/DctM Subunits; Inner Membrane Protein; TRAP-Type Transporter Permease Component; Permease; TRAP-Type Transport System Permease; TRAP Transporter Large Permease; TRAP Transporter 4TM/12TM Fusion Family; TRAP-Type Transporter Fused Permeases; C4-Dicarboxylate Transporter; TRAP Type Transporter Protein; TRAP-T Family Transporter Fused Inner Membrane Subunits; TRAP Transporter Transmembrane Protein; TRAP Transporter Permease; Integral Membrane Protein; Transcriptional Regulator DeoR Family; Trap Family Transporter; N-Carbamoyl-L-Amino Acid Hydrolase; TRAP-Type Transporter; 4TM/12TM TRAP Transporter; TRAP-Type Transport System; TRAP Transporter Membrane-Spanning Component
Number of amino acids: Translated: 850; Mature: 850
Protein sequence:
>850_residues MQDKQLSTEELIAQDVGARSPAGPMAAVIAGLALLWSLFQLWIASPLPFILGFGVLNDTETRSIHLAFALLLAFLAYPAF KRSPRDRVPLMDIALGLVAAACAAYLFLAYSQLAQRPGNLTTLDLVTACVGIPLLLEATRRALGPPLAIIALVFLVYSVA GPWMPGLLAHRGVSFTALANHQWITTEGVFGIALGVSTSFVFLFVLFGALLERAGAGHYFIQLAFSMLGHFRGGPAKAAV VASGMTGLISGSSIANVVTTGTFTIPMMKRTGFSAEKAGAVEVASSVNGQIMPPVMGAAAFLMVEYVGIPYVEVIKHAFL PALISYIALIYIVHLESLKLGLQALPRANVAKPWMQRLIGFAFGAALISGLSLGVYYGLGWLKPALGDAALWVIAGLLAL VYLGLLKIAASNPPLPHEDPNMPLEKLPETRPVLLSGLHFLLPVVVLVWCLMIERLSPGLSAFWGSVMLVIILLTQRPLL SWMRHDRSHVDGTFMDGVIDLREGLIAGARNMIGIGIATAAAGIIVGAVSQTGVGLVLADLVELLSMGNLLLMLLLTAFL SLILGMGLPTTANYIVVSSLLAPVIVALGQQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSKGDPIRTGVTA FYYSLRTAALPFLFIFNTDLLLIGVDFWHGVLIFIVATIAMLIFAAGTQGYFLVRSRWYESLLLLLVAFTLFRPGFWMDL IHDPYQEIPPAQLVEALGNVEEDSQLRLRVLGEDAVGDAREFVLLLAIPDGASGEEKLEKIGLMTYEQDGKLLVDSVTFG SPAAEAGLEFDQQILSVRAPTDRWPKEFMWIPGFLLFGLIVWMQRRRRQT
Sequences:
>Translated_850_residues MQDKQLSTEELIAQDVGARSPAGPMAAVIAGLALLWSLFQLWIASPLPFILGFGVLNDTETRSIHLAFALLLAFLAYPAF KRSPRDRVPLMDIALGLVAAACAAYLFLAYSQLAQRPGNLTTLDLVTACVGIPLLLEATRRALGPPLAIIALVFLVYSVA GPWMPGLLAHRGVSFTALANHQWITTEGVFGIALGVSTSFVFLFVLFGALLERAGAGHYFIQLAFSMLGHFRGGPAKAAV VASGMTGLISGSSIANVVTTGTFTIPMMKRTGFSAEKAGAVEVASSVNGQIMPPVMGAAAFLMVEYVGIPYVEVIKHAFL PALISYIALIYIVHLESLKLGLQALPRANVAKPWMQRLIGFAFGAALISGLSLGVYYGLGWLKPALGDAALWVIAGLLAL VYLGLLKIAASNPPLPHEDPNMPLEKLPETRPVLLSGLHFLLPVVVLVWCLMIERLSPGLSAFWGSVMLVIILLTQRPLL SWMRHDRSHVDGTFMDGVIDLREGLIAGARNMIGIGIATAAAGIIVGAVSQTGVGLVLADLVELLSMGNLLLMLLLTAFL SLILGMGLPTTANYIVVSSLLAPVIVALGQQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSKGDPIRTGVTA FYYSLRTAALPFLFIFNTDLLLIGVDFWHGVLIFIVATIAMLIFAAGTQGYFLVRSRWYESLLLLLVAFTLFRPGFWMDL IHDPYQEIPPAQLVEALGNVEEDSQLRLRVLGEDAVGDAREFVLLLAIPDGASGEEKLEKIGLMTYEQDGKLLVDSVTFG SPAAEAGLEFDQQILSVRAPTDRWPKEFMWIPGFLLFGLIVWMQRRRRQT >Mature_850_residues MQDKQLSTEELIAQDVGARSPAGPMAAVIAGLALLWSLFQLWIASPLPFILGFGVLNDTETRSIHLAFALLLAFLAYPAF KRSPRDRVPLMDIALGLVAAACAAYLFLAYSQLAQRPGNLTTLDLVTACVGIPLLLEATRRALGPPLAIIALVFLVYSVA GPWMPGLLAHRGVSFTALANHQWITTEGVFGIALGVSTSFVFLFVLFGALLERAGAGHYFIQLAFSMLGHFRGGPAKAAV VASGMTGLISGSSIANVVTTGTFTIPMMKRTGFSAEKAGAVEVASSVNGQIMPPVMGAAAFLMVEYVGIPYVEVIKHAFL PALISYIALIYIVHLESLKLGLQALPRANVAKPWMQRLIGFAFGAALISGLSLGVYYGLGWLKPALGDAALWVIAGLLAL VYLGLLKIAASNPPLPHEDPNMPLEKLPETRPVLLSGLHFLLPVVVLVWCLMIERLSPGLSAFWGSVMLVIILLTQRPLL SWMRHDRSHVDGTFMDGVIDLREGLIAGARNMIGIGIATAAAGIIVGAVSQTGVGLVLADLVELLSMGNLLLMLLLTAFL SLILGMGLPTTANYIVVSSLLAPVIVALGQQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSKGDPIRTGVTA FYYSLRTAALPFLFIFNTDLLLIGVDFWHGVLIFIVATIAMLIFAAGTQGYFLVRSRWYESLLLLLVAFTLFRPGFWMDL IHDPYQEIPPAQLVEALGNVEEDSQLRLRVLGEDAVGDAREFVLLLAIPDGASGEEKLEKIGLMTYEQDGKLLVDSVTFG SPAAEAGLEFDQQILSVRAPTDRWPKEFMWIPGFLLFGLIVWMQRRRRQT
Specific function: Unknown
COG id: COG4666
COG function: function code R; TRAP-type uncharacterized transport system, fused permease components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 91453; Mature: 91453
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQDKQLSTEELIAQDVGARSPAGPMAAVIAGLALLWSLFQLWIASPLPFILGFGVLNDTE CCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCC TRSIHLAFALLLAFLAYPAFKRSPRDRVPLMDIALGLVAAACAAYLFLAYSQLAQRPGNL HHHHHHHHHHHHHHHHCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC TTLDLVTACVGIPLLLEATRRALGPPLAIIALVFLVYSVAGPWMPGLLAHRGVSFTALAN HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEEECC HQWITTEGVFGIALGVSTSFVFLFVLFGALLERAGAGHYFIQLAFSMLGHFRGGPAKAAV CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHH VASGMTGLISGSSIANVVTTGTFTIPMMKRTGFSAEKAGAVEVASSVNGQIMPPVMGAAA HHCCCHHHCCCCHHHHHHCCCEEEEEHHHHCCCCCHHCCHHHHHHCCCCCCCCHHHHHHH FLMVEYVGIPYVEVIKHAFLPALISYIALIYIVHLESLKLGLQALPRANVAKPWMQRLIG HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH FAFGAALISGLSLGVYYGLGWLKPALGDAALWVIAGLLALVYLGLLKIAASNPPLPHEDP HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC NMPLEKLPETRPVLLSGLHFLLPVVVLVWCLMIERLSPGLSAFWGSVMLVIILLTQRPLL CCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHH SWMRHDRSHVDGTFMDGVIDLREGLIAGARNMIGIGIATAAAGIIVGAVSQTGVGLVLAD HHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH LVELLSMGNLLLMLLLTAFLSLILGMGLPTTANYIVVSSLLAPVIVALGQQNGLIVPLIA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHH VHLFVFYFGIMADVTPPVGLASFAAAAVSKGDPIRTGVTAFYYSLRTAALPFLFIFNTDL HHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCE LLIGVDFWHGVLIFIVATIAMLIFAAGTQGYFLVRSRWYESLLLLLVAFTLFRPGFWMDL EEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHH IHDPYQEIPPAQLVEALGNVEEDSQLRLRVLGEDAVGDAREFVLLLAIPDGASGEEKLEK HCCCHHHCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHEEEEEECCCCCCCHHHHHH IGLMTYEQDGKLLVDSVTFGSPAAEAGLEFDQQILSVRAPTDRWPKEFMWIPGFLLFGLI HCCCEEECCCCEEEEEECCCCCHHHHCCHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHH VWMQRRRRQT HHHHHHHCCC >Mature Secondary Structure MQDKQLSTEELIAQDVGARSPAGPMAAVIAGLALLWSLFQLWIASPLPFILGFGVLNDTE CCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCC TRSIHLAFALLLAFLAYPAFKRSPRDRVPLMDIALGLVAAACAAYLFLAYSQLAQRPGNL HHHHHHHHHHHHHHHHCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC TTLDLVTACVGIPLLLEATRRALGPPLAIIALVFLVYSVAGPWMPGLLAHRGVSFTALAN HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEEECC HQWITTEGVFGIALGVSTSFVFLFVLFGALLERAGAGHYFIQLAFSMLGHFRGGPAKAAV CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHH VASGMTGLISGSSIANVVTTGTFTIPMMKRTGFSAEKAGAVEVASSVNGQIMPPVMGAAA HHCCCHHHCCCCHHHHHHCCCEEEEEHHHHCCCCCHHCCHHHHHHCCCCCCCCHHHHHHH FLMVEYVGIPYVEVIKHAFLPALISYIALIYIVHLESLKLGLQALPRANVAKPWMQRLIG HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH FAFGAALISGLSLGVYYGLGWLKPALGDAALWVIAGLLALVYLGLLKIAASNPPLPHEDP HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC NMPLEKLPETRPVLLSGLHFLLPVVVLVWCLMIERLSPGLSAFWGSVMLVIILLTQRPLL CCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHH SWMRHDRSHVDGTFMDGVIDLREGLIAGARNMIGIGIATAAAGIIVGAVSQTGVGLVLAD HHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH LVELLSMGNLLLMLLLTAFLSLILGMGLPTTANYIVVSSLLAPVIVALGQQNGLIVPLIA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHH VHLFVFYFGIMADVTPPVGLASFAAAAVSKGDPIRTGVTAFYYSLRTAALPFLFIFNTDL HHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCE LLIGVDFWHGVLIFIVATIAMLIFAAGTQGYFLVRSRWYESLLLLLVAFTLFRPGFWMDL EEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHH IHDPYQEIPPAQLVEALGNVEEDSQLRLRVLGEDAVGDAREFVLLLAIPDGASGEEKLEK HCCCHHHCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHEEEEEECCCCCCCHHHHHH IGLMTYEQDGKLLVDSVTFGSPAAEAGLEFDQQILSVRAPTDRWPKEFMWIPGFLLFGLI HCCCEEECCCCEEEEEECCCCCHHHHCCHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHH VWMQRRRRQT HHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA