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The map label for this gene is 146284313

Identifier: 146284313

GI number: 146284313

Start: 4338686

End: 4340281

Strand: Direct

Name: 146284313

Synonym: PST_4001

Alternate gene names: NA

Gene position: 4338686-4340281 (Clockwise)

Preceding gene: 146284312

Following gene: 146284314

Centisome position: 94.99

GC content: 68.92

Gene sequence:

>1596_bases
GTGCCCGTTCCCGATCTCTTCGCCGAAGGCCTCGCCCGTGGCTGGACCACCCATGACGGCTCGCACCTGCAGCAGGACCT
GACGCTGGAAGCCGATATCGCCATCGTCGGCAGCGGCGCGGGCGGCGCCACCAGCGCGGAAATCCTCAGCGCCGCCGGTT
TCAAGGTGCTGATGATCGAGGAAGGCCCGCTGCGCACCAGCCGCGACTTCGACATGCAGGAAGCCCGGGCCTACCGCTCG
CTCTATCAGGAAGCCATCGGCCGCACCAGCAAGGACGGCGCCATCACGATCCTGCAAGGCCGTGCGGTGGGCGGTACCAC
GCTGGTGAACTGGACCTCGAGTTTCCGCACCCCAGCGCAGACCCTGCAGCACTGGGCCCGCGAGCACGGCGTCAGCGGGC
TTTCGGCCGAAGCGCTGCAACCCTGGTTCGAACGCATGGAGCAGCGCCTGGGCGTGGCACCCTGGGCAGTGCCGCCGAAC
GCCAACAACCAGGTGCTCAGGCGCGGCTGCGAACGGCTCGACTATCACTGGGCGGTGATCCCGCGCAACGTGCGCGGCTG
CTGGAACCTGGGCTACTGCGGCATGGGCTGCCCGACCAATGCCAAGCAGTCGATGCTGGTCACCAGCATTCCGGCGCTGC
TGGACAAGGGCGGCGAACTGCTCTATTTCGCACGGGCCGAGCGCCTGCAGGTGCGTGGCGAGCAGGTGATCGGGCTCGAC
TGCCTGGGCATGGACGAGCGCTGCGTGGCGCCCACCGGCCGGCGCATCCGGGTCATCGCCCGGCACTACATCCTCGCCGG
CGGCGGCATCAACACGCCGGGGTTGCTGCTGCGCTCGGAGGTGCCCGACCCACACCAGCGCGTCGGCAAGCGCACCTTTC
TGCACCTGACCAACTTCTGCGCGGCGCAATTCGATGAGCGCATCGACGCCTTCAGCGGCGCACCGCAATCGATCTATTCG
GATCACTTCCAGTGGCGCGACGGGGCTGCCGGGCCGGCGGGCTACAAGCTCGAAGTGCCGCCCATCCATCCCGCGCTCGC
GGCCACCCTGCTCGGCGATTTCGGCTCGGAGAACGCGCAGCGCATGGCCGCGCTGCCGCATACCCACGCCATGATCGCCC
TGCAGCGCGACGGCTTTCATCCGGACAGTGCCGAGGGCAGCGTCGAGCTGCGCGACGATGGCAGCCCTGTACTCGACTAC
CGCATGACCGCCTACGCCTGGGACGGCATCCGCCGCGCCTTTCTCAGCATGGCCGAGATCCAGTTCGCCGCCGGTGCCCG
CGCGGTGCTGCCGCTGCATGCCGATGCCCGTTACGTGAAGACGGCCCGTGCGGCACGCGAACTGATCGAGCGCCTCGACC
TCGCGCCGTACCGCACCCGCCTCGGCAGCGCGCACGTCATGGGCGGCTGCGCCATGGGCGAAGACCCGCGCCAGGCGGTG
ACCGACAGCCTCGGCCGGCACCATCAGCTGGGCAATCTGTCCATTCACGACGGCTCGCTGTTTCCCACCAGCGTCGGCGC
CAACCCGCAGCTGTCGATTTACGCCCTGTGCGCGAAGCTGGCCACGCAGTTGGGTGATCGCCTGCACAAGTCCTGA

Upstream 100 bases:

>100_bases
CGCTGCTGCAGATGATCCTCATGGCCTGGTACGCCTGCCCCGCTTCCTGGGCGCACTGCGGCTATCCCGGGCCACCGGCC
ATCTGACCAAGGAGGGCGCC

Downstream 100 bases:

>100_bases
GATTGGCTCGCATTCGCGGCAGATCGCCGCATGGCCATTCAGACTTTACGCTGCCGATACCGAGCCGCTACCATCCACAC
CCCCACGCATGCGTCAGGAC

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 531; Mature: 530

Protein sequence:

>531_residues
MPVPDLFAEGLARGWTTHDGSHLQQDLTLEADIAIVGSGAGGATSAEILSAAGFKVLMIEEGPLRTSRDFDMQEARAYRS
LYQEAIGRTSKDGAITILQGRAVGGTTLVNWTSSFRTPAQTLQHWAREHGVSGLSAEALQPWFERMEQRLGVAPWAVPPN
ANNQVLRRGCERLDYHWAVIPRNVRGCWNLGYCGMGCPTNAKQSMLVTSIPALLDKGGELLYFARAERLQVRGEQVIGLD
CLGMDERCVAPTGRRIRVIARHYILAGGGINTPGLLLRSEVPDPHQRVGKRTFLHLTNFCAAQFDERIDAFSGAPQSIYS
DHFQWRDGAAGPAGYKLEVPPIHPALAATLLGDFGSENAQRMAALPHTHAMIALQRDGFHPDSAEGSVELRDDGSPVLDY
RMTAYAWDGIRRAFLSMAEIQFAAGARAVLPLHADARYVKTARAARELIERLDLAPYRTRLGSAHVMGGCAMGEDPRQAV
TDSLGRHHQLGNLSIHDGSLFPTSVGANPQLSIYALCAKLATQLGDRLHKS

Sequences:

>Translated_531_residues
MPVPDLFAEGLARGWTTHDGSHLQQDLTLEADIAIVGSGAGGATSAEILSAAGFKVLMIEEGPLRTSRDFDMQEARAYRS
LYQEAIGRTSKDGAITILQGRAVGGTTLVNWTSSFRTPAQTLQHWAREHGVSGLSAEALQPWFERMEQRLGVAPWAVPPN
ANNQVLRRGCERLDYHWAVIPRNVRGCWNLGYCGMGCPTNAKQSMLVTSIPALLDKGGELLYFARAERLQVRGEQVIGLD
CLGMDERCVAPTGRRIRVIARHYILAGGGINTPGLLLRSEVPDPHQRVGKRTFLHLTNFCAAQFDERIDAFSGAPQSIYS
DHFQWRDGAAGPAGYKLEVPPIHPALAATLLGDFGSENAQRMAALPHTHAMIALQRDGFHPDSAEGSVELRDDGSPVLDY
RMTAYAWDGIRRAFLSMAEIQFAAGARAVLPLHADARYVKTARAARELIERLDLAPYRTRLGSAHVMGGCAMGEDPRQAV
TDSLGRHHQLGNLSIHDGSLFPTSVGANPQLSIYALCAKLATQLGDRLHKS
>Mature_530_residues
PVPDLFAEGLARGWTTHDGSHLQQDLTLEADIAIVGSGAGGATSAEILSAAGFKVLMIEEGPLRTSRDFDMQEARAYRSL
YQEAIGRTSKDGAITILQGRAVGGTTLVNWTSSFRTPAQTLQHWAREHGVSGLSAEALQPWFERMEQRLGVAPWAVPPNA
NNQVLRRGCERLDYHWAVIPRNVRGCWNLGYCGMGCPTNAKQSMLVTSIPALLDKGGELLYFARAERLQVRGEQVIGLDC
LGMDERCVAPTGRRIRVIARHYILAGGGINTPGLLLRSEVPDPHQRVGKRTFLHLTNFCAAQFDERIDAFSGAPQSIYSD
HFQWRDGAAGPAGYKLEVPPIHPALAATLLGDFGSENAQRMAALPHTHAMIALQRDGFHPDSAEGSVELRDDGSPVLDYR
MTAYAWDGIRRAFLSMAEIQFAAGARAVLPLHADARYVKTARAARELIERLDLAPYRTRLGSAHVMGGCAMGEDPRQAVT
DSLGRHHQLGNLSIHDGSLFPTSVGANPQLSIYALCAKLATQLGDRLHKS

Specific function: Unknown

COG id: COG2303

COG function: function code E; Choline dehydrogenase and related flavoproteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GMC oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000172
- InterPro:   IPR007867 [H]

Pfam domain/function: PF05199 GMC_oxred_C; PF00732 GMC_oxred_N [H]

EC number: NA

Molecular weight: Translated: 57836; Mature: 57705

Theoretical pI: Translated: 7.47; Mature: 7.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVPDLFAEGLARGWTTHDGSHLQQDLTLEADIAIVGSGAGGATSAEILSAAGFKVLMIE
CCCHHHHHHHHHCCCCCCCCHHHHHCCEEEEEEEEEECCCCCCHHHHHHHHCCCEEEEEE
EGPLRTSRDFDMQEARAYRSLYQEAIGRTSKDGAITILQGRAVGGTTLVNWTSSFRTPAQ
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEEECCHHCCCHHH
TLQHWAREHGVSGLSAEALQPWFERMEQRLGVAPWAVPPNANNQVLRRGCERLDYHWAVI
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEE
PRNVRGCWNLGYCGMGCPTNAKQSMLVTSIPALLDKGGELLYFARAERLQVRGEQVIGLD
ECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEHHHHHHCCCEEEEEE
CLGMDERCVAPTGRRIRVIARHYILAGGGINTPGLLLRSEVPDPHQRVGKRTFLHLTNFC
ECCCCCCCCCCCCCEEEEEEEEHEEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH
AAQFDERIDAFSGAPQSIYSDHFQWRDGAAGPAGYKLEVPPIHPALAATLLGDFGSENAQ
HHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCHHH
RMAALPHTHAMIALQRDGFHPDSAEGSVELRDDGSPVLDYRMTAYAWDGIRRAFLSMAEI
HHHCCCCCEEEEEEECCCCCCCCCCCEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHH
QFAAGARAVLPLHADARYVKTARAARELIERLDLAPYRTRLGSAHVMGGCAMGEDPRQAV
HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCEECCCCCCCCHHHHH
TDSLGRHHQLGNLSIHDGSLFPTSVGANPQLSIYALCAKLATQLGDRLHKS
HHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PVPDLFAEGLARGWTTHDGSHLQQDLTLEADIAIVGSGAGGATSAEILSAAGFKVLMIE
CCHHHHHHHHHCCCCCCCCHHHHHCCEEEEEEEEEECCCCCCHHHHHHHHCCCEEEEEE
EGPLRTSRDFDMQEARAYRSLYQEAIGRTSKDGAITILQGRAVGGTTLVNWTSSFRTPAQ
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEEECCHHCCCHHH
TLQHWAREHGVSGLSAEALQPWFERMEQRLGVAPWAVPPNANNQVLRRGCERLDYHWAVI
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEE
PRNVRGCWNLGYCGMGCPTNAKQSMLVTSIPALLDKGGELLYFARAERLQVRGEQVIGLD
ECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEHHHHHHCCCEEEEEE
CLGMDERCVAPTGRRIRVIARHYILAGGGINTPGLLLRSEVPDPHQRVGKRTFLHLTNFC
ECCCCCCCCCCCCCEEEEEEEEHEEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH
AAQFDERIDAFSGAPQSIYSDHFQWRDGAAGPAGYKLEVPPIHPALAATLLGDFGSENAQ
HHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCHHH
RMAALPHTHAMIALQRDGFHPDSAEGSVELRDDGSPVLDYRMTAYAWDGIRRAFLSMAEI
HHHCCCCCEEEEEEECCCCCCCCCCCEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHH
QFAAGARAVLPLHADARYVKTARAARELIERLDLAPYRTRLGSAHVMGGCAMGEDPRQAV
HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCEECCCCCCCCHHHHH
TDSLGRHHQLGNLSIHDGSLFPTSVGANPQLSIYALCAKLATQLGDRLHKS
HHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]