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The map label for this gene is rarD-1 [C]

Identifier: 146284208

GI number: 146284208

Start: 4223965

End: 4224855

Strand: Direct

Name: rarD-1 [C]

Synonym: PST_3896

Alternate gene names: 146284208

Gene position: 4223965-4224855 (Clockwise)

Preceding gene: 146284205

Following gene: 146284210

Centisome position: 92.48

GC content: 65.54

Gene sequence:

>891_bases
ATGGCTACCGCCAATCTGCGCAAGGGTTATCTGCTGGGGCTGGCCACCTTCAGCATCTGGGGCATGTTCCCGCTCTACTT
CAAGGCACTCGAACAATACGGCGCGCTCGAGATCGTCACCCAGCGCGTGATCTGGTCGGCCGTGTTCGGCTCGCTGGTGC
TGCTGGTCTGGCGTCATCCGGGCTGGTGGCGCGAACTGCTGGCGCATCCACGTCGCCTCGGCGTGCTCGGCATCTCCAGC
GTGCTGATCGCGGCCAACTGGCTGATTTACGTCTGGGCGGTGAACCACGACCGAATGGTCGAGGCGAGCCTTGGCTACTA
CATCAATCCGCTGGTCAACGTGCTGCTCGGCATGCTCGTGCTGCGCGAGCGGCTGCGTCCGCTGCAGTGGCTGGCCGTGG
CCATGGCCACCGTCGGCGTCAGCCTGCAGCTGCTGATGCTCGGTGAATTTCCCTGGATTTCCCTGGTGCTGGCGCTGAGC
TTCGGCACCTACGGCCTGCTGCGCAAGCAGGCACCGGTGGCCGCGCTGCCGGGGTTGGTAGTGGAAACCTGGCTGCTGCT
ACCGGTGGCGCTGATCTGGCTGTTCTGGTTCGGCAACGGCGCGAGCACGGAACCGGCGTTCTGGACCAGCACCGATGCGC
TCTGGCTGATGGCGGCAGGCCCGGTGACCCTGATCCCGCTGCTCGGCTTCAACGCCGCCGCGCGCCACCTGCCCTATTCG
ACACTGGGCTTCCTGCAATACCTGACGCCGACGCTGCTGCTGATCCTCGCCGTGCAGCTGTTCGGCGAGCCATTTCCGGT
CGATCGCCAGCTGGCATTCTTCTGCATCTGGGCCGGCCTCGCGGTATACAGCCTGGACGCCTGGCGGGTGATGCGCAAAA
GCACCGGCTGA

Upstream 100 bases:

>100_bases
CAGCCCGTCGCGCGGCGCCGCTCTGTTAGCTGACTAACCTTTCTCTCCTCTGGCCAAAGGCGCAAAATGGCCGGCTCTCC
GCTGCTCGTCGAAGGACGTC

Downstream 100 bases:

>100_bases
GTGCTACGCCTGCTCGGCCGGCTGCAGCTTGAGCTCCACCATCAGGTCGTCGGCGAGGGTTTCCAGGCGCTCCTGCAGCC
GCTCCAGCGACAGGTCGCTG

Product: RarD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MATANLRKGYLLGLATFSIWGMFPLYFKALEQYGALEIVTQRVIWSAVFGSLVLLVWRHPGWWRELLAHPRRLGVLGISS
VLIAANWLIYVWAVNHDRMVEASLGYYINPLVNVLLGMLVLRERLRPLQWLAVAMATVGVSLQLLMLGEFPWISLVLALS
FGTYGLLRKQAPVAALPGLVVETWLLLPVALIWLFWFGNGASTEPAFWTSTDALWLMAAGPVTLIPLLGFNAAARHLPYS
TLGFLQYLTPTLLLILAVQLFGEPFPVDRQLAFFCIWAGLAVYSLDAWRVMRKSTG

Sequences:

>Translated_296_residues
MATANLRKGYLLGLATFSIWGMFPLYFKALEQYGALEIVTQRVIWSAVFGSLVLLVWRHPGWWRELLAHPRRLGVLGISS
VLIAANWLIYVWAVNHDRMVEASLGYYINPLVNVLLGMLVLRERLRPLQWLAVAMATVGVSLQLLMLGEFPWISLVLALS
FGTYGLLRKQAPVAALPGLVVETWLLLPVALIWLFWFGNGASTEPAFWTSTDALWLMAAGPVTLIPLLGFNAAARHLPYS
TLGFLQYLTPTLLLILAVQLFGEPFPVDRQLAFFCIWAGLAVYSLDAWRVMRKSTG
>Mature_295_residues
ATANLRKGYLLGLATFSIWGMFPLYFKALEQYGALEIVTQRVIWSAVFGSLVLLVWRHPGWWRELLAHPRRLGVLGISSV
LIAANWLIYVWAVNHDRMVEASLGYYINPLVNVLLGMLVLRERLRPLQWLAVAMATVGVSLQLLMLGEFPWISLVLALSF
GTYGLLRKQAPVAALPGLVVETWLLLPVALIWLFWFGNGASTEPAFWTSTDALWLMAAGPVTLIPLLGFNAAARHLPYST
LGFLQYLTPTLLLILAVQLFGEPFPVDRQLAFFCIWAGLAVYSLDAWRVMRKSTG

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=295, Percent_Identity=45.4237288135593, Blast_Score=248, Evalue=2e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33114; Mature: 32983

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATANLRKGYLLGLATFSIWGMFPLYFKALEQYGALEIVTQRVIWSAVFGSLVLLVWRHP
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCC
GWWRELLAHPRRLGVLGISSVLIAANWLIYVWAVNHDRMVEASLGYYINPLVNVLLGMLV
CHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHH
LRERLRPLQWLAVAMATVGVSLQLLMLGEFPWISLVLALSFGTYGLLRKQAPVAALPGLV
HHHHHCHHHHHHHHHHHHHHHHEEEHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
VETWLLLPVALIWLFWFGNGASTEPAFWTSTDALWLMAAGPVTLIPLLGFNAAARHLPYS
HHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCEEEEECCCHHHHHHHCCCHHHHHCCHH
TLGFLQYLTPTLLLILAVQLFGEPFPVDRQLAFFCIWAGLAVYSLDAWRVMRKSTG
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ATANLRKGYLLGLATFSIWGMFPLYFKALEQYGALEIVTQRVIWSAVFGSLVLLVWRHP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCC
GWWRELLAHPRRLGVLGISSVLIAANWLIYVWAVNHDRMVEASLGYYINPLVNVLLGMLV
CHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHH
LRERLRPLQWLAVAMATVGVSLQLLMLGEFPWISLVLALSFGTYGLLRKQAPVAALPGLV
HHHHHCHHHHHHHHHHHHHHHHEEEHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
VETWLLLPVALIWLFWFGNGASTEPAFWTSTDALWLMAAGPVTLIPLLGFNAAARHLPYS
HHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCEEEEECCCHHHHHHHCCCHHHHHCCHH
TLGFLQYLTPTLLLILAVQLFGEPFPVDRQLAFFCIWAGLAVYSLDAWRVMRKSTG
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]