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The map label for this gene is ydiU [C]

Identifier: 146284193

GI number: 146284193

Start: 4207091

End: 4208551

Strand: Direct

Name: ydiU [C]

Synonym: PST_3881

Alternate gene names: 146284193

Gene position: 4207091-4208551 (Clockwise)

Preceding gene: 146284192

Following gene: 146284199

Centisome position: 92.11

GC content: 66.05

Gene sequence:

>1461_bases
TTGAAGACCCTGACCCAGCTCCATTTCGACAATCGCTTCGCCCGTCTCGGCGATACCTTTTCCACCCAGGTATCGCCGCA
GCCGCTGGAAGCGCCGCGCCTGGTGGTGGCAAGCGAGGCGGCGATGGCCCTGCTGGATCTCGACCCGGCCGAAGCCGAGC
AGGCGCTGTTCGCCGAACTGTTCTCCGGGCACAAGATCTGGTCCACCGCCGAGCCGCGCGCGATGGTCTATTCCGGCCAC
CAGTTCGGCAGTTACAACCCGCAGCTCGGCGACGGCCGAGGCCTGCTGCTCGGCGAGGTGGTGAACGAGGCCGGCGAGTA
CTGGGACCTGCACCTCAAGGGCGCCGGCAAGACGCCCTATTCGCGCATGGGCGATGGTCGCGCGGTGCTGCGCTCGTCGA
TCCGCGAATTCCTCGCCAGCGAGCATCTGCACGCCCTCGGCATCCCCAGTTCCCGCGCGCTGTGCGTCACCGGTTCGGAC
ACCCTGGTCTACCGCGAACGCCCCGAGCGTGGCGCCATGCTGCTGCGCCTGGCGCCAAGCCACGTGCGTTTCGGCCACTT
CGAGTTCTTCTACTACACCCGCCAGCACGGCGAACTGAAGCAGCTGCTCGAGCATGTCATCGAGGTGCACTTCCCCGAAC
TGCTGGAACATCCCGAACCGTTCCACATGTTCTTCCGCACGGTGCTCGAACGCACCGCCGCGCTGATTGCCCGCTGGCAG
GCCTACGGCTTCTGCCACGGAGTGATGAATACCGACAACATGTCGATCCTCGGCATCACCTTCGACTTCGGCCCCTACGC
CTTCCTCGATGACTTCGATGCCCGCTTCATCTGCAACCACTCCGACGATACCGGCCGCTACTCCTTCGAGAATCAGGTGC
CCATCGCCCACTGGAACCTGGCCGCGCTGGCCCAGGCGCTGACGCCCTTCGTCGAGGTCAAGGTGCTGCGCGAAACCATG
GAGCTGTTCCTGCCTCTGTACGAGGCCGAATGGCTCGATCTGATGCGCCGCCGGCTGGGTTTCAGCCAGGCCGAGGATGG
CGACGCCGAGCTGATCCGCCGCCTGCTGCAGTTGATGCAGGGCAGCGCGGTGGATTACACGCGCTTCTTCCGCGAACTCG
GCGAGCGCCCGGCCGAACAGGCCGTGCAGCGGCTGCGTGAGGATTTCATCGATCTGCAGGGCTTCGATGCCTGGGCGGCG
GACTATTGCGCGCGCAGCGCCCGCGAGGGCGGCGATCCGGTCGCGCGGCAGGCACGGATGCACGCGGTCAATCCGAAGTA
CATCCTGCGCAACTATCTGGCGCAGCAAGCGATCGAGGCGGCGGAGAAAGGCGATTACGCGCCGGTGCGCGAGCTGCATG
CGGTTCTCAGCCGCCCCTTCGACGAACAGCCCGGGATGGAGCGCTACGCCGAGCGGCCGCCCGAGTGGGGCAAGCATCTG
GAAATCAGCTGCTCGTCCTGA

Upstream 100 bases:

>100_bases
CGCGCCTGAGGAACGTCCAGGCGTCCGTCGTCCTCCAACGTCCTGAACAGGCTCGGCTCCGGCCGGGCCATGCTTGCCCG
CATGCCGCGCCGGAGGCGAC

Downstream 100 bases:

>100_bases
GACCGCCGCCCTGGGGCTGCGAGGCTGGCTATTCGCCCAGCGGCAGCAGCACGCGGAACACGGAGCCGCGACCTTCCTCG
CTGTGCACCTGGATACGCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 486; Mature: 486

Protein sequence:

>486_residues
MKTLTQLHFDNRFARLGDTFSTQVSPQPLEAPRLVVASEAAMALLDLDPAEAEQALFAELFSGHKIWSTAEPRAMVYSGH
QFGSYNPQLGDGRGLLLGEVVNEAGEYWDLHLKGAGKTPYSRMGDGRAVLRSSIREFLASEHLHALGIPSSRALCVTGSD
TLVYRERPERGAMLLRLAPSHVRFGHFEFFYYTRQHGELKQLLEHVIEVHFPELLEHPEPFHMFFRTVLERTAALIARWQ
AYGFCHGVMNTDNMSILGITFDFGPYAFLDDFDARFICNHSDDTGRYSFENQVPIAHWNLAALAQALTPFVEVKVLRETM
ELFLPLYEAEWLDLMRRRLGFSQAEDGDAELIRRLLQLMQGSAVDYTRFFRELGERPAEQAVQRLREDFIDLQGFDAWAA
DYCARSAREGGDPVARQARMHAVNPKYILRNYLAQQAIEAAEKGDYAPVRELHAVLSRPFDEQPGMERYAERPPEWGKHL
EISCSS

Sequences:

>Translated_486_residues
MKTLTQLHFDNRFARLGDTFSTQVSPQPLEAPRLVVASEAAMALLDLDPAEAEQALFAELFSGHKIWSTAEPRAMVYSGH
QFGSYNPQLGDGRGLLLGEVVNEAGEYWDLHLKGAGKTPYSRMGDGRAVLRSSIREFLASEHLHALGIPSSRALCVTGSD
TLVYRERPERGAMLLRLAPSHVRFGHFEFFYYTRQHGELKQLLEHVIEVHFPELLEHPEPFHMFFRTVLERTAALIARWQ
AYGFCHGVMNTDNMSILGITFDFGPYAFLDDFDARFICNHSDDTGRYSFENQVPIAHWNLAALAQALTPFVEVKVLRETM
ELFLPLYEAEWLDLMRRRLGFSQAEDGDAELIRRLLQLMQGSAVDYTRFFRELGERPAEQAVQRLREDFIDLQGFDAWAA
DYCARSAREGGDPVARQARMHAVNPKYILRNYLAQQAIEAAEKGDYAPVRELHAVLSRPFDEQPGMERYAERPPEWGKHL
EISCSS
>Mature_486_residues
MKTLTQLHFDNRFARLGDTFSTQVSPQPLEAPRLVVASEAAMALLDLDPAEAEQALFAELFSGHKIWSTAEPRAMVYSGH
QFGSYNPQLGDGRGLLLGEVVNEAGEYWDLHLKGAGKTPYSRMGDGRAVLRSSIREFLASEHLHALGIPSSRALCVTGSD
TLVYRERPERGAMLLRLAPSHVRFGHFEFFYYTRQHGELKQLLEHVIEVHFPELLEHPEPFHMFFRTVLERTAALIARWQ
AYGFCHGVMNTDNMSILGITFDFGPYAFLDDFDARFICNHSDDTGRYSFENQVPIAHWNLAALAQALTPFVEVKVLRETM
ELFLPLYEAEWLDLMRRRLGFSQAEDGDAELIRRLLQLMQGSAVDYTRFFRELGERPAEQAVQRLREDFIDLQGFDAWAA
DYCARSAREGGDPVARQARMHAVNPKYILRNYLAQQAIEAAEKGDYAPVRELHAVLSRPFDEQPGMERYAERPPEWGKHL
EISCSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family

Homologues:

Organism=Homo sapiens, GI32880229, Length=385, Percent_Identity=43.8961038961039, Blast_Score=295, Evalue=5e-80,
Organism=Escherichia coli, GI1787999, Length=465, Percent_Identity=48.8172043010753, Blast_Score=441, Evalue=1e-125,
Organism=Saccharomyces cerevisiae, GI6325034, Length=381, Percent_Identity=37.007874015748, Blast_Score=207, Evalue=4e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3881_PSEU5 (A4VRA3)

Other databases:

- EMBL:   CP000304
- RefSeq:   YP_001174346.1
- STRING:   A4VRA3
- GeneID:   5096842
- GenomeReviews:   CP000304_GR
- KEGG:   psa:PST_3881
- eggNOG:   COG0397
- HOGENOM:   HBG683993
- OMA:   FGSYNPR
- PhylomeDB:   A4VRA3
- ProtClustDB:   PRK00029
- BioCyc:   PSTU379731:PST_3881-MONOMER
- HAMAP:   MF_00692
- InterPro:   IPR003846

Pfam domain/function: PF02696 UPF0061

EC number: NA

Molecular weight: Translated: 55345; Mature: 55345

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLTQLHFDNRFARLGDTFSTQVSPQPLEAPRLVVASEAAMALLDLDPAEAEQALFAEL
CCCHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCEEEEHHHHHHHHCCCHHHHHHHHHHHH
FSGHKIWSTAEPRAMVYSGHQFGSYNPQLGDGRGLLLGEVVNEAGEYWDLHLKGAGKTPY
HCCCCEECCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCH
SRMGDGRAVLRSSIREFLASEHLHALGIPSSRALCVTGSDTLVYRERPERGAMLLRLAPS
HHCCCCHHHHHHHHHHHHHHCCHHEECCCCCCEEEEECCCEEEEECCCCCCCEEEEECCC
HVRFGHFEFFYYTRQHGELKQLLEHVIEVHFPELLEHPEPFHMFFRTVLERTAALIARWQ
CCCCCEEEEEEEECCCCHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
AYGFCHGVMNTDNMSILGITFDFGPYAFLDDFDARFICNHSDDTGRYSFENQVPIAHWNL
HHHHEECCCCCCCEEEEEEEECCCCCHHHCCCCCEEEECCCCCCCCCCCCCCCCEECCCH
AALAQALTPFVEVKVLRETMELFLPLYEAEWLDLMRRRLGFSQAEDGDAELIRRLLQLMQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC
GSAVDYTRFFRELGERPAEQAVQRLREDFIDLQGFDAWAADYCARSAREGGDPVARQARM
CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHH
HAVNPKYILRNYLAQQAIEAAEKGDYAPVRELHAVLSRPFDEQPGMERYAERPPEWGKHL
HCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCEE
EISCSS
EEEECC
>Mature Secondary Structure
MKTLTQLHFDNRFARLGDTFSTQVSPQPLEAPRLVVASEAAMALLDLDPAEAEQALFAEL
CCCHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCEEEEHHHHHHHHCCCHHHHHHHHHHHH
FSGHKIWSTAEPRAMVYSGHQFGSYNPQLGDGRGLLLGEVVNEAGEYWDLHLKGAGKTPY
HCCCCEECCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCH
SRMGDGRAVLRSSIREFLASEHLHALGIPSSRALCVTGSDTLVYRERPERGAMLLRLAPS
HHCCCCHHHHHHHHHHHHHHCCHHEECCCCCCEEEEECCCEEEEECCCCCCCEEEEECCC
HVRFGHFEFFYYTRQHGELKQLLEHVIEVHFPELLEHPEPFHMFFRTVLERTAALIARWQ
CCCCCEEEEEEEECCCCHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
AYGFCHGVMNTDNMSILGITFDFGPYAFLDDFDARFICNHSDDTGRYSFENQVPIAHWNL
HHHHEECCCCCCCEEEEEEEECCCCCHHHCCCCCEEEECCCCCCCCCCCCCCCCEECCCH
AALAQALTPFVEVKVLRETMELFLPLYEAEWLDLMRRRLGFSQAEDGDAELIRRLLQLMQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC
GSAVDYTRFFRELGERPAEQAVQRLREDFIDLQGFDAWAADYCARSAREGGDPVARQARM
CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHH
HAVNPKYILRNYLAQQAIEAAEKGDYAPVRELHAVLSRPFDEQPGMERYAERPPEWGKHL
HCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCEE
EISCSS
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA