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The map label for this gene is gmr [H]

Identifier: 146284114

GI number: 146284114

Start: 4109928

End: 4111889

Strand: Direct

Name: gmr [H]

Synonym: PST_3802

Alternate gene names: 146284114

Gene position: 4109928-4111889 (Clockwise)

Preceding gene: 146284113

Following gene: 146284115

Centisome position: 89.98

GC content: 65.55

Gene sequence:

>1962_bases
GTGCATCGACTGACGTCCAGCGACGACCTGGCCGAAGCCCTGACGCAGACCTGGGACCTGCTGATCAATGCACCGCAAAG
CGAGAACCTCGACCCCAGCGAGGCGATCGGCGCCATTCGCCGGCAGGCCAAGGACATCCCGATCATCCAGCTGACTGCCG
GCAACGATGCCGAAGCGATCACCGAAGCGTTGATGCTCGGCGCCCAGGATGCGCTGCCGCAGGGCGAGGATGAGTGGCTC
CTGCTGGTGGCCAACCGCGAGCTGGCCAACCTGGAAGAGCGTCGCGCACGACGCTCGGCGGAAGTGGCGCTGCGCGAGGC
CGAAAAGCGCTGCCAGTTGCTGCTCGACAGCTCGGTGGATGCCATCGCCTATGTGCACGATGGCATGCACATCTACGCCA
ACCGCGCCTACCTCGAGCTGTTCGGCTACGACGACGTGGAGGATCTGGAAGGCATGCCGATGATCGACTTGATCGCCGGC
ACCGACCAGAGTCGTTTCAAGACGTTCCTGAAGAACTACCAGACCCTCGAAGGCGCCGCCGAGCTTGCCTGCGGTGGCGT
GCGCGCCGACGGCGACACGCTCAAGACACGGATGATCTTCTCGCCGGCAGCCTACGACGGCGAGCCCTGCATCCAGGTCG
TGATCCGTGCCGAGAACGACAGCGCCGAACTGCAGAAACTGCGCGAAATCAGCAGTCAGGACCCCGTGACCGGCCTGCTC
AACCGCAACAGCTTCCTCGAAGTGATGGATGCCGCCGTCGAGCGCGCCGTGAACGCCGGACAGAGCGCCAGCCTGGCCTA
TGTTCGCGTCGACCGCTTCGCCGCGCTGCAGGCGGACATCGGCCTGGCCGACTCGGACGAGCTGCTCAGTCAGCTGGCCA
CCCTGCTGCGCGGACACTTTTCCGGCGACAGCCAGCTGGCACGCTTCGCCGACGACGTGTTCACCGTGCTGCAGCCCGGC
CTCACTCCGCAGCAGGCCGAACCCGAACTGCGCAAGCTGCTGAGCAAGGTCGAAGGCCATCTGCTCGACGTCGGCGGCCG
CACGGTGCAGACCACCCTCAGCATTGGCGTCGCCGGCCTCGACGAAAAGACCGCCAAGGCTCAGGACGCCATCGAGCGCG
CACACCGCTGCGCCGATGACCTGAGCGATGGCAATGCGCTGAAAATCTACAACCCGGCCGACGAGCTGGCCGCCGCCGCC
AACCGCGGCGACATCATCGCCATGCTCAAGCAGGCCCTGGAGAACAACAGCTTCCGCCTGCTGTTCCAGCCGATCATCAG
CCTGCGTGGCGACAGTTTCGAACACTACGAAGTGCTGCTGCGCCTGCTCGATCCGCAAGGCGTGGAGGTACCGCCCAGCG
AGTTCCTCAGCGTCGCCAGCGAGGCGGGCCTGGCCACCAAGATCGATCGCTGGGTCATCCTCAACTCCATCAAGCTGCTG
GCCGAACACCGGGCCAAGGGCCATCGCACACGGCTGTTCCTGCACCTGTCGGCTGCCAGCATCCAGGACGCCAGCCTGCT
GGCCTGGCTGGGCGTCGTGCTCAAGGCGTCGCGCCTGCCGGGCGATTCGCTGGCCTTCGAATTGGGCGAAGCCGATGCCG
TGGCCTACCTGAAGCCGGCCAAGGCGCTGGCGCAGGGGTTGGCCGGGCTCGGCTGTCGCATCGCGCTGTCCCAGTTCGGC
TGCGTGCTCAACCCGTTCAACACGCTCAAGCATCTGGACGCCGAGTTCATCAAGGTCGACGGCTCCTACACCCAGGACCT
CACCCGCCAGGAGAACCAGGAAGCCCTGAAGGCACTGCTGGCCGAGCTGCATGAGCAGCAGAAGCAGAGCATCGTGCCCT
TCGTCGAAAGCGCCACGGTACTTGCCACCCTCTGGCAGGCCGGCGTCAGCTATATCCAGGGCCACTACCTGCAGGGCCCG
AGCCAGTCGATGGACTACGACTTCTCCTCCGACGAAGAATGA

Upstream 100 bases:

>100_bases
CCTGCAAAAGAAAACCATCCGCCTGCTGATTCTCGAAGACTCGCAGAACGAGGCTGAGCGTCTGGTCAGCCTTTTCCGCA
ATGCCGGACAGGCGACCCGG

Downstream 100 bases:

>100_bases
CCTCCGGGCTGGCTCCCACCAGCCCGAAGACAGCCTTCTGCGCCAACTCGCCCTGACTTGATCGCGGTCATCCGCCGGCT
TCCACGCTGGGCTAGAGTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 653; Mature: 653

Protein sequence:

>653_residues
MHRLTSSDDLAEALTQTWDLLINAPQSENLDPSEAIGAIRRQAKDIPIIQLTAGNDAEAITEALMLGAQDALPQGEDEWL
LLVANRELANLEERRARRSAEVALREAEKRCQLLLDSSVDAIAYVHDGMHIYANRAYLELFGYDDVEDLEGMPMIDLIAG
TDQSRFKTFLKNYQTLEGAAELACGGVRADGDTLKTRMIFSPAAYDGEPCIQVVIRAENDSAELQKLREISSQDPVTGLL
NRNSFLEVMDAAVERAVNAGQSASLAYVRVDRFAALQADIGLADSDELLSQLATLLRGHFSGDSQLARFADDVFTVLQPG
LTPQQAEPELRKLLSKVEGHLLDVGGRTVQTTLSIGVAGLDEKTAKAQDAIERAHRCADDLSDGNALKIYNPADELAAAA
NRGDIIAMLKQALENNSFRLLFQPIISLRGDSFEHYEVLLRLLDPQGVEVPPSEFLSVASEAGLATKIDRWVILNSIKLL
AEHRAKGHRTRLFLHLSAASIQDASLLAWLGVVLKASRLPGDSLAFELGEADAVAYLKPAKALAQGLAGLGCRIALSQFG
CVLNPFNTLKHLDAEFIKVDGSYTQDLTRQENQEALKALLAELHEQQKQSIVPFVESATVLATLWQAGVSYIQGHYLQGP
SQSMDYDFSSDEE

Sequences:

>Translated_653_residues
MHRLTSSDDLAEALTQTWDLLINAPQSENLDPSEAIGAIRRQAKDIPIIQLTAGNDAEAITEALMLGAQDALPQGEDEWL
LLVANRELANLEERRARRSAEVALREAEKRCQLLLDSSVDAIAYVHDGMHIYANRAYLELFGYDDVEDLEGMPMIDLIAG
TDQSRFKTFLKNYQTLEGAAELACGGVRADGDTLKTRMIFSPAAYDGEPCIQVVIRAENDSAELQKLREISSQDPVTGLL
NRNSFLEVMDAAVERAVNAGQSASLAYVRVDRFAALQADIGLADSDELLSQLATLLRGHFSGDSQLARFADDVFTVLQPG
LTPQQAEPELRKLLSKVEGHLLDVGGRTVQTTLSIGVAGLDEKTAKAQDAIERAHRCADDLSDGNALKIYNPADELAAAA
NRGDIIAMLKQALENNSFRLLFQPIISLRGDSFEHYEVLLRLLDPQGVEVPPSEFLSVASEAGLATKIDRWVILNSIKLL
AEHRAKGHRTRLFLHLSAASIQDASLLAWLGVVLKASRLPGDSLAFELGEADAVAYLKPAKALAQGLAGLGCRIALSQFG
CVLNPFNTLKHLDAEFIKVDGSYTQDLTRQENQEALKALLAELHEQQKQSIVPFVESATVLATLWQAGVSYIQGHYLQGP
SQSMDYDFSSDEE
>Mature_653_residues
MHRLTSSDDLAEALTQTWDLLINAPQSENLDPSEAIGAIRRQAKDIPIIQLTAGNDAEAITEALMLGAQDALPQGEDEWL
LLVANRELANLEERRARRSAEVALREAEKRCQLLLDSSVDAIAYVHDGMHIYANRAYLELFGYDDVEDLEGMPMIDLIAG
TDQSRFKTFLKNYQTLEGAAELACGGVRADGDTLKTRMIFSPAAYDGEPCIQVVIRAENDSAELQKLREISSQDPVTGLL
NRNSFLEVMDAAVERAVNAGQSASLAYVRVDRFAALQADIGLADSDELLSQLATLLRGHFSGDSQLARFADDVFTVLQPG
LTPQQAEPELRKLLSKVEGHLLDVGGRTVQTTLSIGVAGLDEKTAKAQDAIERAHRCADDLSDGNALKIYNPADELAAAA
NRGDIIAMLKQALENNSFRLLFQPIISLRGDSFEHYEVLLRLLDPQGVEVPPSEFLSVASEAGLATKIDRWVILNSIKLL
AEHRAKGHRTRLFLHLSAASIQDASLLAWLGVVLKASRLPGDSLAFELGEADAVAYLKPAKALAQGLAGLGCRIALSQFG
CVLNPFNTLKHLDAEFIKVDGSYTQDLTRQENQEALKALLAELHEQQKQSIVPFVESATVLATLWQAGVSYIQGHYLQGP
SQSMDYDFSSDEE

Specific function: Part of a 2 protein system that seems to be dedicated to transcription of csgD. This protein decreases csgD transcription and thus decreases expression of adhesive curli fimbriae genes csgEFG, csgBAC/ymaD and adrA (yaic). Activity of this protein is antag

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=432, Percent_Identity=25.9259259259259, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI1788849, Length=448, Percent_Identity=26.1160714285714, Blast_Score=129, Evalue=4e-31,
Organism=Escherichia coli, GI87081921, Length=427, Percent_Identity=26.2295081967213, Blast_Score=113, Evalue=4e-26,
Organism=Escherichia coli, GI1788381, Length=550, Percent_Identity=26, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI1789650, Length=432, Percent_Identity=24.7685185185185, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI226510982, Length=424, Percent_Identity=23.8207547169811, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1790496, Length=232, Percent_Identity=27.1551724137931, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87082096, Length=237, Percent_Identity=25.7383966244726, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF00989 PAS [H]

EC number: =3.1.4.52 [H]

Molecular weight: Translated: 71313; Mature: 71313

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRLTSSDDLAEALTQTWDLLINAPQSENLDPSEAIGAIRRQAKDIPIIQLTAGNDAEAI
CCCCCCCHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHH
TEALMLGAQDALPQGEDEWLLLVANRELANLEERRARRSAEVALREAEKRCQLLLDSSVD
HHHHHHCCHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
AIAYVHDGMHIYANRAYLELFGYDDVEDLEGMPMIDLIAGTDQSRFKTFLKNYQTLEGAA
EEEEEECCEEEEECCEEEEEECCCCHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH
ELACGGVRADGDTLKTRMIFSPAAYDGEPCIQVVIRAENDSAELQKLREISSQDPVTGLL
HHHCCCCCCCCCHHEEEEEECCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCHHH
NRNSFLEVMDAAVERAVNAGQSASLAYVRVDRFAALQADIGLADSDELLSQLATLLRGHF
CCCHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
SGDSQLARFADDVFTVLQPGLTPQQAEPELRKLLSKVEGHLLDVGGRTVQTTLSIGVAGL
CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEECCCCEEEHHHHHCCCCC
DEKTAKAQDAIERAHRCADDLSDGNALKIYNPADELAAAANRGDIIAMLKQALENNSFRL
CHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCHHHHHHHHHHCCCCEEE
LFQPIISLRGDSFEHYEVLLRLLDPQGVEVPPSEFLSVASEAGLATKIDRWVILNSIKLL
HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
AEHRAKGHRTRLFLHLSAASIQDASLLAWLGVVLKASRLPGDSLAFELGEADAVAYLKPA
HHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHEEECCCCCHHHHHHHH
KALAQGLAGLGCRIALSQFGCVLNPFNTLKHLDAEFIKVDGSYTQDLTRQENQEALKALL
HHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHH
AELHEQQKQSIVPFVESATVLATLWQAGVSYIQGHYLQGPSQSMDYDFSSDEE
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MHRLTSSDDLAEALTQTWDLLINAPQSENLDPSEAIGAIRRQAKDIPIIQLTAGNDAEAI
CCCCCCCHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHH
TEALMLGAQDALPQGEDEWLLLVANRELANLEERRARRSAEVALREAEKRCQLLLDSSVD
HHHHHHCCHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
AIAYVHDGMHIYANRAYLELFGYDDVEDLEGMPMIDLIAGTDQSRFKTFLKNYQTLEGAA
EEEEEECCEEEEECCEEEEEECCCCHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH
ELACGGVRADGDTLKTRMIFSPAAYDGEPCIQVVIRAENDSAELQKLREISSQDPVTGLL
HHHCCCCCCCCCHHEEEEEECCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCHHH
NRNSFLEVMDAAVERAVNAGQSASLAYVRVDRFAALQADIGLADSDELLSQLATLLRGHF
CCCHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
SGDSQLARFADDVFTVLQPGLTPQQAEPELRKLLSKVEGHLLDVGGRTVQTTLSIGVAGL
CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEECCCCEEEHHHHHCCCCC
DEKTAKAQDAIERAHRCADDLSDGNALKIYNPADELAAAANRGDIIAMLKQALENNSFRL
CHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCHHHHHHHHHHCCCCEEE
LFQPIISLRGDSFEHYEVLLRLLDPQGVEVPPSEFLSVASEAGLATKIDRWVILNSIKLL
HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
AEHRAKGHRTRLFLHLSAASIQDASLLAWLGVVLKASRLPGDSLAFELGEADAVAYLKPA
HHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHEEECCCCCHHHHHHHH
KALAQGLAGLGCRIALSQFGCVLNPFNTLKHLDAEFIKVDGSYTQDLTRQENQEALKALL
HHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHH
AELHEQQKQSIVPFVESATVLATLWQAGVSYIQGHYLQGPSQSMDYDFSSDEE
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]