Click here to switch to the map view.

The map label for this gene is nirN [H]

Identifier: 146283855

GI number: 146283855

Start: 3824889

End: 3826397

Strand: Direct

Name: nirN [H]

Synonym: PST_3538

Alternate gene names: 146283855

Gene position: 3824889-3826397 (Clockwise)

Preceding gene: 146283854

Following gene: 146283856

Centisome position: 83.74

GC content: 66.6

Gene sequence:

>1509_bases
ATGCAACTGATACCCGCCCTGCTGCTGGCCGCCGCGCTGCCGGCCGCCACCTTCGTCGCCCTCGACATGGCCAGTGCTGC
CACGCCGGACGACAGCCAGGCCCTGTATGAACAGCACTGCCAGGCCTGCCACGGCGTCAACCGCCTCGGTGGCGCCGGGC
CGGCGCTGCTGCCGGAAAGCCTCAGCCGCATCAAACCGGCCGAGGCCCAGGCGGTGATCCGCGACGGCCGCCCGGCGAGC
CAGATGGCCGCCTATTCACACGTGCTGAATGACGCGCAGATCACCGGCCTGGTCGATTACCTGTATCAGCCCTCGGCCGT
GCCGCCGACCTGGAGCGATGCCGATATCCGGGCCAGCCACCGCATCCTCACCGACGTCGCCACCCTGCCGACGACTCCGC
AGCACGGCGCCGATCCGCGCAACCTGTTCGTCGTGGTCGAGGCTGGCAATCATCACGTGCGGGTGCTGGATGGCGATCGT
TTCGAGGAACTGGCCAACTTCCAGTCGCACTTCGCCCTGCACGGCGGGCCGAAGTTCTCGCCCGATGGCCGCTTCGTCTA
TTTCGCCTCCCGCGATGGCTGGGTCAGCGTCTACGACCTGCACAACCTGACTATGCTCGCCGAGGTCCGTGCCGGGCTGA
ACACCCGCAACCTGGCGGTCAGCAACGACGGCCGCTGGGTGCTGGTGGGCAACTACCTGCCGGGCACCCTGGTGCTGCTC
GATGCGCGCGACCTGTCGCTGGTCAAGCACATCCCCGCCGTAGGCCAGGACGGCACGCCGTCGCGGGTCAGCGCCGTGTA
CACCGCGCCGCCGCGCGACAGCTTCGTGGTCGCGCTGAAGGACGTGAAAGAGGCCTGGGAGCTCTCCTATACCGGCGAGC
CGACCTTCGAACCGCGGCGCATCGAGGCCGCAGACTTCCTCGATGACTTCTCCTTCACGCCGGACTACCGCTACCTGCTG
GCCACCTCGCGCAAGGCCCACGGTGGCCAGGTGATCGATCTCGACAACGGCCAGGCGGTCACCGACATTCCGCTGCCGGG
CATGCCGCACCTGGGCTCGGGCATCTACTGGAAACGCGACGGCAAATGGGTGTTCGCCACCCCCAACGTCAGCAAGGGAC
TGATCTCGGTGCTGGATCTGGACACCTGGAAGCTGATCAAGGAGATCCCCACCGAAGGCCCGGGCTTCTTCATGCGCAGC
CAGGCAAACTCGCCCTACGCCTGGACCGACGTGTTCTTCGGCCCGAACAACGACGCCGTGCACCTGATCGACAAGCAGAC
CCTGGAAGTCGCCCACACGCTGCGGCCGATGCCGGGCAAGAACGCCGCCCACGTCGAATTCACCAACGACGGCCGCTACG
CCCTGCTCAGCGTCTGGGACACCGACGGCGCACTGATCGTCTACGACGCCAAGACGCTGGAGGAGGTCAAGCGCATCCCG
ATGAACAAGCCATCGGGCAAGTACAACGTCGGCAACAAGATCGAATTCGCCGAAGGCACCTCGCATTAG

Upstream 100 bases:

>100_bases
CTCTCACCGTAATCGGCAAGGTGGTGGGCCTGTTCGCCGAGCGCCAGGTCCGCCACCCGGCGCGCCTGCACGGCGACCCG
CTCGCCACCGCGGAGGCCTT

Downstream 100 bases:

>100_bases
CACCTTGCGCGTCGCCCGCAGAGAACAGCGGGCGACCTATCATCCGCAAGCCAATACAATCCGTGGTTCCAGCACTTTCA
TGAAGGCCGACCATGGACAT

Product: c-type cytochrome

Products: NA

Alternate protein names: Cytochrome cd1; Cytochrome oxidase; Hydroxylamine reductase [H]

Number of amino acids: Translated: 502; Mature: 502

Protein sequence:

>502_residues
MQLIPALLLAAALPAATFVALDMASAATPDDSQALYEQHCQACHGVNRLGGAGPALLPESLSRIKPAEAQAVIRDGRPAS
QMAAYSHVLNDAQITGLVDYLYQPSAVPPTWSDADIRASHRILTDVATLPTTPQHGADPRNLFVVVEAGNHHVRVLDGDR
FEELANFQSHFALHGGPKFSPDGRFVYFASRDGWVSVYDLHNLTMLAEVRAGLNTRNLAVSNDGRWVLVGNYLPGTLVLL
DARDLSLVKHIPAVGQDGTPSRVSAVYTAPPRDSFVVALKDVKEAWELSYTGEPTFEPRRIEAADFLDDFSFTPDYRYLL
ATSRKAHGGQVIDLDNGQAVTDIPLPGMPHLGSGIYWKRDGKWVFATPNVSKGLISVLDLDTWKLIKEIPTEGPGFFMRS
QANSPYAWTDVFFGPNNDAVHLIDKQTLEVAHTLRPMPGKNAAHVEFTNDGRYALLSVWDTDGALIVYDAKTLEEVKRIP
MNKPSGKYNVGNKIEFAEGTSH

Sequences:

>Translated_502_residues
MQLIPALLLAAALPAATFVALDMASAATPDDSQALYEQHCQACHGVNRLGGAGPALLPESLSRIKPAEAQAVIRDGRPAS
QMAAYSHVLNDAQITGLVDYLYQPSAVPPTWSDADIRASHRILTDVATLPTTPQHGADPRNLFVVVEAGNHHVRVLDGDR
FEELANFQSHFALHGGPKFSPDGRFVYFASRDGWVSVYDLHNLTMLAEVRAGLNTRNLAVSNDGRWVLVGNYLPGTLVLL
DARDLSLVKHIPAVGQDGTPSRVSAVYTAPPRDSFVVALKDVKEAWELSYTGEPTFEPRRIEAADFLDDFSFTPDYRYLL
ATSRKAHGGQVIDLDNGQAVTDIPLPGMPHLGSGIYWKRDGKWVFATPNVSKGLISVLDLDTWKLIKEIPTEGPGFFMRS
QANSPYAWTDVFFGPNNDAVHLIDKQTLEVAHTLRPMPGKNAAHVEFTNDGRYALLSVWDTDGALIVYDAKTLEEVKRIP
MNKPSGKYNVGNKIEFAEGTSH
>Mature_502_residues
MQLIPALLLAAALPAATFVALDMASAATPDDSQALYEQHCQACHGVNRLGGAGPALLPESLSRIKPAEAQAVIRDGRPAS
QMAAYSHVLNDAQITGLVDYLYQPSAVPPTWSDADIRASHRILTDVATLPTTPQHGADPRNLFVVVEAGNHHVRVLDGDR
FEELANFQSHFALHGGPKFSPDGRFVYFASRDGWVSVYDLHNLTMLAEVRAGLNTRNLAVSNDGRWVLVGNYLPGTLVLL
DARDLSLVKHIPAVGQDGTPSRVSAVYTAPPRDSFVVALKDVKEAWELSYTGEPTFEPRRIEAADFLDDFSFTPDYRYLL
ATSRKAHGGQVIDLDNGQAVTDIPLPGMPHLGSGIYWKRDGKWVFATPNVSKGLISVLDLDTWKLIKEIPTEGPGFFMRS
QANSPYAWTDVFFGPNNDAVHLIDKQTLEVAHTLRPMPGKNAAHVEFTNDGRYALLSVWDTDGALIVYDAKTLEEVKRIP
MNKPSGKYNVGNKIEFAEGTSH

Specific function: Inactivation of this cytochrome oxidase results in the loss of nitrite and nitric oxide reductase activities, but not of nitrous oxide reductase activity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cytochrome c domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR011048
- InterPro:   IPR003143
- InterPro:   IPR015943 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: =1.7.2.1; =1.7.99.1 [H]

Molecular weight: Translated: 54912; Mature: 54912

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLIPALLLAAALPAATFVALDMASAATPDDSQALYEQHCQACHGVNRLGGAGPALLPES
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHCCCCCCCCCHHH
LSRIKPAEAQAVIRDGRPASQMAAYSHVLNDAQITGLVDYLYQPSAVPPTWSDADIRASH
HHHCCCCHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
RILTDVATLPTTPQHGADPRNLFVVVEAGNHHVRVLDGDRFEELANFQSHFALHGGPKFS
HHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEECCCHHHHHHHHHHHEEECCCCCCC
PDGRFVYFASRDGWVSVYDLHNLTMLAEVRAGLNTRNLAVSNDGRWVLVGNYLPGTLVLL
CCCCEEEEECCCCCEEEEECCCHHEEHHHHCCCCCCEEEEECCCCEEEECCCCCCEEEEE
DARDLSLVKHIPAVGQDGTPSRVSAVYTAPPRDSFVVALKDVKEAWELSYTGEPTFEPRR
ECCCHHHHHHCCCCCCCCCCCCEEEEEECCCCCCEEEEEHHHHHHHCEECCCCCCCCCCE
IEAADFLDDFSFTPDYRYLLATSRKAHGGQVIDLDNGQAVTDIPLPGMPHLGSGIYWKRD
ECHHHHHHCCCCCCCCEEEEEECCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCEEEEC
GKWVFATPNVSKGLISVLDLDTWKLIKEIPTEGPGFFMRSQANSPYAWTDVFFGPNNDAV
CEEEEECCCCCCCHHHHHCCHHHHHHHHCCCCCCCEEEECCCCCCEEEEEEEECCCCCEE
HLIDKQTLEVAHTLRPMPGKNAAHVEFTNDGRYALLSVWDTDGALIVYDAKTLEEVKRIP
EEECHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEECCCCEEEEEEHHHHHHHHHCC
MNKPSGKYNVGNKIEFAEGTSH
CCCCCCCCCCCCEEEECCCCCC
>Mature Secondary Structure
MQLIPALLLAAALPAATFVALDMASAATPDDSQALYEQHCQACHGVNRLGGAGPALLPES
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHCCCCCCCCCHHH
LSRIKPAEAQAVIRDGRPASQMAAYSHVLNDAQITGLVDYLYQPSAVPPTWSDADIRASH
HHHCCCCHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
RILTDVATLPTTPQHGADPRNLFVVVEAGNHHVRVLDGDRFEELANFQSHFALHGGPKFS
HHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEECCCHHHHHHHHHHHEEECCCCCCC
PDGRFVYFASRDGWVSVYDLHNLTMLAEVRAGLNTRNLAVSNDGRWVLVGNYLPGTLVLL
CCCCEEEEECCCCCEEEEECCCHHEEHHHHCCCCCCEEEEECCCCEEEECCCCCCEEEEE
DARDLSLVKHIPAVGQDGTPSRVSAVYTAPPRDSFVVALKDVKEAWELSYTGEPTFEPRR
ECCCHHHHHHCCCCCCCCCCCCEEEEEECCCCCCEEEEEHHHHHHHCEECCCCCCCCCCE
IEAADFLDDFSFTPDYRYLLATSRKAHGGQVIDLDNGQAVTDIPLPGMPHLGSGIYWKRD
ECHHHHHHCCCCCCCCEEEEEECCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCEEEEC
GKWVFATPNVSKGLISVLDLDTWKLIKEIPTEGPGFFMRSQANSPYAWTDVFFGPNNDAV
CEEEEECCCCCCCHHHHHCCHHHHHHHHCCCCCCCEEEECCCCCCEEEEEEEECCCCCEE
HLIDKQTLEVAHTLRPMPGKNAAHVEFTNDGRYALLSVWDTDGALIVYDAKTLEEVKRIP
EEECHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEECCCCEEEEEEHHHHHHHHHCC
MNKPSGKYNVGNKIEFAEGTSH
CCCCCCCCCCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7747927 [H]