Click here to switch to the map view.

The map label for this gene is alc

Identifier: 146283422

GI number: 146283422

Start: 3329126

End: 3330121

Strand: Direct

Name: alc

Synonym: PST_3095

Alternate gene names: 146283422

Gene position: 3329126-3330121 (Clockwise)

Preceding gene: 146283421

Following gene: 146283423

Centisome position: 72.89

GC content: 64.86

Gene sequence:

>996_bases
ATGAAAGCTTACGCCGTACCCTTCGAGAAATACGTCAACCTGGCCGACGCACGTCTGGGCACCCGCGCCATTTCCGTCAC
CGACGACTGGTTCGCCGACGTCAACCGGCTGTTCCAGCCCACGCCGGCCGTATGGAAGGAAGGCGTATTCGATGACAACG
GCAAGTGGATGGACGGCTGGGAGTCGCGCCGCAAGCGTTTCGAAGGTTACGACCACGCGGTGATCCGCCTCGGCGTACCG
GGCTGGATCAAGGGCGTGGATATCGACACCAGCTTCTTCACCGGCAACTACCCGCCGTCTGCCTCGCTGGAAGCCTGCTT
CGTCGCCGATGGCGACCCGAGCGACGCGACCGTCTGGACCGAAATCCTTCCGGCCGTGGAGCTCAAGGGCAACAGCCACC
ACTACCATGAGATCGCCTTCGACAAGCCGGTCAGTCACCTGCGCTTCAACATCTACCCGGACGGAGGCGTAGCCCGCCTG
CGCGTGCACGGCATCCCGTACCGCGACTGGAGCAGCGTCGGCCACAACGAGCAGGTCGACCTGGCGGCCGCCCTCAATGG
CGGCCGCGCACTGGCCTGCTCGGACGAGCACTTCGGGCGCATGAGCAACATCCTCAACCCGAACCGCGGCGAGAACATGG
GTGACGGCTGGGAAACCGCCCGCCGCCGCACCCCTGGCAATGACTGGGTGATCGTCGCCCTCGGCCACCCGGGCGAGATC
GAGCGCGTCGTCGTCGATACCCTGCACTTCAAGGGCAACTATCCCGACAGCTGCTCGATCCAGGCGGCCTACGTGAAGGG
CGGCACCGACAGCCAGATCGAAACGCAGAGCCTGTTCTGGCGCGAACTGCTGCCCAGCCAGAAGCTCTCCATGCACGCCG
AACACGAATTCGCCGGGCAGATCGCCAAGCTCGGCCCGGTGACCCACGTACGCCTGAACATCTTTCCGGACGGCGGCGTC
AGCCGGCTACGGCTGTTTGGCAAGGTGGTGAAGTAA

Upstream 100 bases:

>100_bases
CCTGTTCCGCCTGCAGGCCATGTAGCCGGAAAGGGACCGGCAACACCGCACTACAGGCTGCAAGGGCAGAACGCTCCACT
CCATTTCAAGGCAGATCGCG

Downstream 100 bases:

>100_bases
GGAGCGGGACTCAGCCCTCAGCCGAACCCTCTCCCTTCGGGGTGAGGGCGCGGGCTCCAGCGAACAATGAAAAGCATCCA
CTAATTGAACGAGCAAACCA

Product: allantoicase

Products: NA

Alternate protein names: Allantoate amidinohydrolase

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MKAYAVPFEKYVNLADARLGTRAISVTDDWFADVNRLFQPTPAVWKEGVFDDNGKWMDGWESRRKRFEGYDHAVIRLGVP
GWIKGVDIDTSFFTGNYPPSASLEACFVADGDPSDATVWTEILPAVELKGNSHHYHEIAFDKPVSHLRFNIYPDGGVARL
RVHGIPYRDWSSVGHNEQVDLAAALNGGRALACSDEHFGRMSNILNPNRGENMGDGWETARRRTPGNDWVIVALGHPGEI
ERVVVDTLHFKGNYPDSCSIQAAYVKGGTDSQIETQSLFWRELLPSQKLSMHAEHEFAGQIAKLGPVTHVRLNIFPDGGV
SRLRLFGKVVK

Sequences:

>Translated_331_residues
MKAYAVPFEKYVNLADARLGTRAISVTDDWFADVNRLFQPTPAVWKEGVFDDNGKWMDGWESRRKRFEGYDHAVIRLGVP
GWIKGVDIDTSFFTGNYPPSASLEACFVADGDPSDATVWTEILPAVELKGNSHHYHEIAFDKPVSHLRFNIYPDGGVARL
RVHGIPYRDWSSVGHNEQVDLAAALNGGRALACSDEHFGRMSNILNPNRGENMGDGWETARRRTPGNDWVIVALGHPGEI
ERVVVDTLHFKGNYPDSCSIQAAYVKGGTDSQIETQSLFWRELLPSQKLSMHAEHEFAGQIAKLGPVTHVRLNIFPDGGV
SRLRLFGKVVK
>Mature_331_residues
MKAYAVPFEKYVNLADARLGTRAISVTDDWFADVNRLFQPTPAVWKEGVFDDNGKWMDGWESRRKRFEGYDHAVIRLGVP
GWIKGVDIDTSFFTGNYPPSASLEACFVADGDPSDATVWTEILPAVELKGNSHHYHEIAFDKPVSHLRFNIYPDGGVARL
RVHGIPYRDWSSVGHNEQVDLAAALNGGRALACSDEHFGRMSNILNPNRGENMGDGWETARRRTPGNDWVIVALGHPGEI
ERVVVDTLHFKGNYPDSCSIQAAYVKGGTDSQIETQSLFWRELLPSQKLSMHAEHEFAGQIAKLGPVTHVRLNIFPDGGV
SRLRLFGKVVK

Specific function: Unknown

COG id: COG4266

COG function: function code F; Allantoicase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the allantoicase family

Homologues:

Organism=Homo sapiens, GI144953901, Length=365, Percent_Identity=36.1643835616438, Blast_Score=230, Evalue=1e-60,
Organism=Saccharomyces cerevisiae, GI6322220, Length=339, Percent_Identity=36.283185840708, Blast_Score=209, Evalue=4e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ALLC_PSEU5 (A4VP32)

Other databases:

- EMBL:   CP000304
- RefSeq:   YP_001173575.1
- ProteinModelPortal:   A4VP32
- SMR:   A4VP32
- STRING:   A4VP32
- GeneID:   5096056
- GenomeReviews:   CP000304_GR
- KEGG:   psa:PST_3095
- eggNOG:   COG4266
- HOGENOM:   HBG480577
- OMA:   NSHHYHE
- PhylomeDB:   A4VP32
- ProtClustDB:   PRK13257
- BioCyc:   PSTU379731:PST_3095-MONOMER
- HAMAP:   MF_00813
- InterPro:   IPR005164
- InterPro:   IPR015908
- InterPro:   IPR008979
- PANTHER:   PTHR12045
- PIRSF:   PIRSF016516
- TIGRFAMs:   TIGR02961

Pfam domain/function: PF03561 Allantoicase; SSF49785 Gal_bind_like

EC number: =3.5.3.4

Molecular weight: Translated: 36915; Mature: 36915

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAYAVPFEKYVNLADARLGTRAISVTDDWFADVNRLFQPTPAVWKEGVFDDNGKWMDGW
CCCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCH
ESRRKRFEGYDHAVIRLGVPGWIKGVDIDTSFFTGNYPPSASLEACFVADGDPSDATVWT
HHHHHHCCCCCEEEEEECCCCCEEEEECCCCEEECCCCCCCCCEEEEEECCCCCCCCHHH
EILPAVELKGNSHHYHEIAFDKPVSHLRFNIYPDGGVARLRVHGIPYRDWSSVGHNEQVD
HHHCCEEECCCCCEEEEEECCCCCCCEEEEEECCCCEEEEEEECCCCCCHHHCCCCCCEE
LAAALNGGRALACSDEHFGRMSNILNPNRGENMGDGWETARRRTPGNDWVIVALGHPGEI
EEEEECCCEEEEECCHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCEEEEEECCCCCC
ERVVVDTLHFKGNYPDSCSIQAAYVKGGTDSQIETQSLFWRELLPSQKLSMHAEHEFAGQ
CEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCHHHHCCCHHHHHH
IAKLGPVTHVRLNIFPDGGVSRLRLFGKVVK
HHHCCCEEEEEEEEECCCCHHHHHHHHHHCC
>Mature Secondary Structure
MKAYAVPFEKYVNLADARLGTRAISVTDDWFADVNRLFQPTPAVWKEGVFDDNGKWMDGW
CCCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCH
ESRRKRFEGYDHAVIRLGVPGWIKGVDIDTSFFTGNYPPSASLEACFVADGDPSDATVWT
HHHHHHCCCCCEEEEEECCCCCEEEEECCCCEEECCCCCCCCCEEEEEECCCCCCCCHHH
EILPAVELKGNSHHYHEIAFDKPVSHLRFNIYPDGGVARLRVHGIPYRDWSSVGHNEQVD
HHHCCEEECCCCCEEEEEECCCCCCCEEEEEECCCCEEEEEEECCCCCCHHHCCCCCCEE
LAAALNGGRALACSDEHFGRMSNILNPNRGENMGDGWETARRRTPGNDWVIVALGHPGEI
EEEEECCCEEEEECCHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCEEEEEECCCCCC
ERVVVDTLHFKGNYPDSCSIQAAYVKGGTDSQIETQSLFWRELLPSQKLSMHAEHEFAGQ
CEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCHHHHCCCHHHHHH
IAKLGPVTHVRLNIFPDGGVSRLRLFGKVVK
HHHCCCEEEEEEEEECCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA