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The map label for this gene is exoD [H]

Identifier: 146283186

GI number: 146283186

Start: 3069753

End: 3070343

Strand: Direct

Name: exoD [H]

Synonym: PST_2851

Alternate gene names: 146283186

Gene position: 3069753-3070343 (Clockwise)

Preceding gene: 146283184

Following gene: 146283187

Centisome position: 67.21

GC content: 63.62

Gene sequence:

>591_bases
ATGAATTCCGAAACACCACCGCAGAACCTCGAACGCTTGCTGGAGCGTCTCGAGCAGGCCGGGGAGCCGGGTGAGCCGGT
AAGCATCGAGTGCATGCTGCAAGCCACCGATGAGCGCAGCTTCGGTGCCCTGCTGCTGGTACCAGGCCTGCTGGTGTTCT
CGCCCCTGTCGGGGATTCCCGGATTGCCCAGCGTGTTCGCGGTGATGGTTTCGCTGATCGCAATTCAGCTGCTGATCGGC
CGGAAGCACTTCTGGCTACCCAAATGGCTGCTCAAGCGCAGCGCCTCGCGCAGCAAGTACGACAAGGCCATAGCCTTCCT
GCATCGCATTGCCGGCTTCGTCGACCGCCTGCTCAAGCGACGGCTGACCTTCCTTACCAACGGCCTGGCGAATCGGCTGA
ATGCCGTGCTGTGCCTGGCAATAGCGGCCACCATGCCGCCGCTGGAGCTGATCCCGTTCGGCAACTCCACTGCCGGCGCC
GCCTTGAGCGTGCTGGGGCTGGGTATGATGGCGCGCGACGGCGCCATGGTCATCGCCGCCCTGCTGTTCTTCTTCGGTCT
GGCCTTCATGGTGTCCCGACTCTGGCTGTGA

Upstream 100 bases:

>100_bases
AACAAACTCACGTAATTTCATTTCAAAGTAAGAAATATTCATGTTGGAGCATTTGGCGCACCCGGGGCTCTAAACCAGAA
CCCAACTTGAAGGCGCCCCC

Downstream 100 bases:

>100_bases
GCCGGTCGTGACGCCCGATAGCGGCCTCTCGACAGCATGGGGGCGCTGCGACACACTTGCGAAGGATGAGCCTCGCTCAT
CTTCACCCTCTTTCTGGGAT

Product: uncharacterized ABC-type transport system, permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MNSETPPQNLERLLERLEQAGEPGEPVSIECMLQATDERSFGALLLVPGLLVFSPLSGIPGLPSVFAVMVSLIAIQLLIG
RKHFWLPKWLLKRSASRSKYDKAIAFLHRIAGFVDRLLKRRLTFLTNGLANRLNAVLCLAIAATMPPLELIPFGNSTAGA
ALSVLGLGMMARDGAMVIAALLFFFGLAFMVSRLWL

Sequences:

>Translated_196_residues
MNSETPPQNLERLLERLEQAGEPGEPVSIECMLQATDERSFGALLLVPGLLVFSPLSGIPGLPSVFAVMVSLIAIQLLIG
RKHFWLPKWLLKRSASRSKYDKAIAFLHRIAGFVDRLLKRRLTFLTNGLANRLNAVLCLAIAATMPPLELIPFGNSTAGA
ALSVLGLGMMARDGAMVIAALLFFFGLAFMVSRLWL
>Mature_196_residues
MNSETPPQNLERLLERLEQAGEPGEPVSIECMLQATDERSFGALLLVPGLLVFSPLSGIPGLPSVFAVMVSLIAIQLLIG
RKHFWLPKWLLKRSASRSKYDKAIAFLHRIAGFVDRLLKRRLTFLTNGLANRLNAVLCLAIAATMPPLELIPFGNSTAGA
ALSVLGLGMMARDGAMVIAALLFFFGLAFMVSRLWL

Specific function: Required for nodule invasion. Mutations in this gene lead to sensitivity to alkaline conditions which prevents nodule invasion [H]

COG id: COG3932

COG function: function code R; Uncharacterized ABC-type transport system, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To Synechocystis PCC 6803 slr1875 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010331 [H]

Pfam domain/function: PF06055 ExoD [H]

EC number: NA

Molecular weight: Translated: 21388; Mature: 21388

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSETPPQNLERLLERLEQAGEPGEPVSIECMLQATDERSFGALLLVPGLLVFSPLSGIP
CCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCC
GLPSVFAVMVSLIAIQLLIGRKHFWLPKWLLKRSASRSKYDKAIAFLHRIAGFVDRLLKR
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
RLTFLTNGLANRLNAVLCLAIAATMPPLELIPFGNSTAGAALSVLGLGMMARDGAMVIAA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHH
LLFFFGLAFMVSRLWL
HHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNSETPPQNLERLLERLEQAGEPGEPVSIECMLQATDERSFGALLLVPGLLVFSPLSGIP
CCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCC
GLPSVFAVMVSLIAIQLLIGRKHFWLPKWLLKRSASRSKYDKAIAFLHRIAGFVDRLLKR
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
RLTFLTNGLANRLNAVLCLAIAATMPPLELIPFGNSTAGAALSVLGLGMMARDGAMVIAA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHH
LLFFFGLAFMVSRLWL
HHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1748284; 11481430 [H]